Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Reverse (-)

12997501 .. 12999278

Gene Structure 1778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011822

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCTCCTGAAGGCCTCCTCAGTTGTGGAGAAGTCCCTAAATGTACCTGGGCCTGTTGATCAACTACTCTCTGATTATGCAAAGAGATTTAATGAAATCAAGACCCCTCATAAGCTATTGTGGAAGAAGAATCTTGGTACTGTCAAGTTGGAATTGCAATTTGAAGATAGAGAAATGCAGTTCATGGTTGCTCCTCTTCAAGTCTTCATCTGGACCTCCAAAGATCTTGCAGCTGCAGTTGGGGTTCCAATAGATACACTTAATCGGAGGATCAATTTTTGGATAAGCAAGGGAATTCTTGCAAAATCACTTGGGGAAGATACTGATGACCATGTGTTTACACTAATGGAAGGGATGATTGGACAACTTGGTGAGGCACAAAGAAGTTATTATGGGTTTAGTTCAGTTCATAGGGCTGTGAGTCCTGTGACAATGAGTTACAATCTTGTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

152

Amino Acids

17.05

Weight (kDa)

6.84

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	29
AfaI	GTAC	2 cut(s)	45, 139
AgsI	TTSAA	2 cut(s)	164, 200
AjnI	CCWGG	1 cut(s)	46
AjuI	GAANNNNNNNTTGG	2 cut(s)	342, 374
AluBI	AGCT	2 cut(s)	115, 233
AluI	AGCT	2 cut(s)	115, 233
AlwI	GGATC	1 cut(s)	278
AoxI	GGCC	2 cut(s)	12, 50
ApeKI	GCWGC	2 cut(s)	230, 233
ApoI	RAATTY	1 cut(s)	294
AspS9I	GGNCC	2 cut(s)	50, 213
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	220, 242
BciT130I	CCWGG	1 cut(s)	48
BclI	TGATCA	1 cut(s)	58
BfmI	CTRYAG	1 cut(s)	234
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	2 cut(s)	231, 234
BlsI	GCNGC	2 cut(s)	232, 235
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	2 cut(s)	50, 213
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	33
BseRI	GAGGAG	2 cut(s)	7, 183
BseXI	GCAGC	2 cut(s)	220, 242
BshFI	GGCC	2 cut(s)	14, 52
BslFI	GGGAC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	14, 52
Bsp143I	GATC	3 cut(s)	58, 223, 270
BspANI	GGCC	2 cut(s)	14, 52
BspCNI	CTCAG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	246
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	3 cut(s)	58, 223, 270
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	360
BstKTI	GATC	3 cut(s)	61, 226, 273
BstMBI	GATC	3 cut(s)	58, 223, 270
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	220, 242
BstV2I	GAAGAC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	14, 52
BtsCI	GGATG	1 cut(s)	360
Cfr13I	GGNCC	2 cut(s)	50, 213
Csp6I	GTAC	2 cut(s)	44, 138
CviAII	CATG	2 cut(s)	184, 332
CviJI	RGCY	5 cut(s)	14, 52, 115, 233, 416
CviKI_1	RGCY	5 cut(s)	14, 52, 115, 233, 416
CviQI	GTAC	2 cut(s)	44, 138
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	3 cut(s)	60, 225, 272
DpnII	GATC	3 cut(s)	58, 223, 270
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	46
FaeI	CATG	2 cut(s)	187, 335
FaiI	YATR	6 cut(s)	78, 111, 185, 333, 393, 411
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	183, 331
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	231, 234
FokI	GGATG	1 cut(s)	367
Fsp4HI	GCNGC	2 cut(s)	231, 234
GluI	GCNGC	2 cut(s)	231, 234
HaeIII	GGCC	2 cut(s)	14, 52
Hin1II	CATG	2 cut(s)	187, 335
HinfI	GANTC	2 cut(s)	130, 421
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	2 cut(s)	73, 267
Hpy188III	TCNNGA	3 cut(s)	7, 100, 211
Hpy8I	GTNNAC	1 cut(s)	339
HpyAV	CCTTC	2 cut(s)	4, 344
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	6 cut(s)	80, 157, 178, 230, 236, 302
HpyF3I	CTNAG	1 cut(s)	19
Hsp92II	CATG	2 cut(s)	187, 335
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	58, 223, 270
LmnI	GCTCC	2 cut(s)	9, 196
LpnPI	CCDG	6 cut(s)	20, 33, 60, 66, 196, 438
Lsp1109I	GCAGC	2 cut(s)	220, 242
MaeIII	GTNAC	2 cut(s)	427, 437
MalI	GATC	3 cut(s)	60, 225, 272
MboI	GATC	3 cut(s)	58, 223, 270
MboII	GAAGA	6 cut(s)	136, 139, 176, 188, 196, 329
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	4 cut(s)	152, 158, 274, 294
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	7 cut(s)	25, 28, 117, 204, 226, 261, 367
MseI	TTAA	2 cut(s)	90, 261
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
NdeII	GATC	3 cut(s)	58, 223, 270
NlaIII	CATG	2 cut(s)	187, 335
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	427
PceI	AGGCCT	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	232, 235
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	50, 213
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	2 cut(s)	45, 139
RsaNI	GTAC	2 cut(s)	44, 138
SaqAI	TTAA	2 cut(s)	90, 261
SatI	GCNGC	2 cut(s)	231, 234
Sau3AI	GATC	3 cut(s)	58, 223, 270
Sau96I	GGNCC	2 cut(s)	50, 213
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	4 cut(s)	49, 117, 218, 235
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	213
Sse9I	AATT	4 cut(s)	152, 158, 274, 294
SseBI	AGGCCT	1 cut(s)	14
StuI	AGGCCT	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	142
TasI	AATT	4 cut(s)	152, 158, 274, 294
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	2 cut(s)	90, 261
Tru9I	TTAA	2 cut(s)	90, 261
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	2 cut(s)	230, 233
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	4 cut(s)	108, 172, 196, 398
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.