Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Forward (+)

59406208 .. 59408353

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG375800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGATATTCTTGACGCTACAATTATCTCTTCAAATTTTTGGCCTCCAATCCAGGGAATTCTTGCAGAATCACTTGGGGAAGACACTGATGACCATGTGTTTACACTAATGGAAGGGATGATTGACACTGGCAAAAACACTGCTAATGATGGGAACTGCGAGGATCTTATAGTTGGTGATGAGGAAGGAGAGAGCTCTGTAGCCTCTGTAGAGGATCAACTGCGCAAGGAAATGACTGTGTATGAGAAATTTATTTTGGGGATGCTCACAAACTTTGGAAGCATGGCTTTGGATCGTATTCATAATACTCTCAAGATGTTCTGCATAGCTGATCCTACTTATGACAAAACCCTCCAACAGCTGCAAAGTTTCTTATCAGGTCTAGTTTCTGAAGAGAAATTAGAACTAAGAGATGGCATGTACTTTTTGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

145

Amino Acids

16.24

Weight (kDa)

4.22

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANAPC2	PF08672	84 - 141	1.1e-24	Anaphase promoting complex (APC) subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	224
AclWI	GGATC	4 cut(s)	171, 222, 300, 326
AcsI	RAATTY	3 cut(s)	34, 57, 248
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	33, 430
AjnI	CCWGG	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	3 cut(s)	195, 329, 361
AluI	AGCT	3 cut(s)	195, 329, 361
Alw21I	GWGCWC	1 cut(s)	197
AlwI	GGATC	4 cut(s)	171, 222, 300, 326
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	3 cut(s)	34, 57, 248
AspLEI	GCGC	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	2 cut(s)	143, 407
BciT130I	CCWGG	1 cut(s)	53
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	2 cut(s)	198, 207
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	123, 267
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	348
BshFI	GGCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	53
BsnI	GGCC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	4 cut(s)	163, 214, 292, 331
BspANI	GGCC	1 cut(s)	43
BspPI	GGATC	4 cut(s)	171, 222, 300, 326
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	4 cut(s)	163, 214, 292, 331
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	2 cut(s)	34, 387
BstDEI	CTNAG	1 cut(s)	407
BstF5I	GGATG	2 cut(s)	123, 267
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	4 cut(s)	166, 217, 295, 334
BstMBI	GATC	4 cut(s)	163, 214, 292, 331
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	2 cut(s)	198, 207
BstV1I	GCAGC	1 cut(s)	348
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	123, 267
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	3 cut(s)	84, 126, 138
CfoI	GCGC	1 cut(s)	225
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	3 cut(s)	95, 283, 418
CviJI	RGCY	6 cut(s)	43, 195, 203, 287, 329, 361
CviKI_1	RGCY	6 cut(s)	43, 195, 203, 287, 329, 361
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	4 cut(s)	165, 216, 294, 333
DpnII	GATC	4 cut(s)	163, 214, 292, 331
Eam1104I	CTCTTC	2 cut(s)	34, 387
EarI	CTCTTC	2 cut(s)	34, 387
Ecl136II	GAGCTC	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	411
EcoICRI	GAGCTC	1 cut(s)	195
EcoRI	GAATTC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	197
FaeI	CATG	3 cut(s)	98, 286, 421
FaiI	YATR	8 cut(s)	96, 170, 243, 284, 303, 326, 342, 419
FalI	AAGNNNNNCTT	2 cut(s)	271, 303
FatI	CATG	3 cut(s)	94, 282, 417
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	2 cut(s)	130, 274
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	362
FspBI	CTAG	1 cut(s)	383
FspI	TGCGCA	1 cut(s)	224
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	43
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	98, 286, 421
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	68
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188I	TCNGA	1 cut(s)	391
Hpy188III	TCNNGA	2 cut(s)	11, 313
Hpy8I	GTNNAC	1 cut(s)	102
HpyAV	CCTTC	2 cut(s)	107, 179
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	65, 324, 364
HpyF3I	CTNAG	1 cut(s)	407
Hsp92II	CATG	3 cut(s)	98, 286, 421
HspAI	GCGC	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	163, 214, 292, 331
LpnPI	CCDG	4 cut(s)	38, 65, 114, 363
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	1 cut(s)	383
MalI	GATC	4 cut(s)	165, 216, 294, 333
MboI	GATC	4 cut(s)	163, 214, 292, 331
MboII	GAAGA	3 cut(s)	21, 92, 404
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	5 cut(s)	21, 34, 57, 248, 398
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	6 cut(s)	54, 154, 175, 205, 214, 362
MspA1I	CMGCKG	1 cut(s)	361
MspR9I	CCNGG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	53
NdeII	GATC	4 cut(s)	163, 214, 292, 331
NlaIII	CATG	3 cut(s)	98, 286, 421
NsbI	TGCGCA	1 cut(s)	224
NspI	RCATGY	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	361
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SacI	GAGCTC	1 cut(s)	197
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	4 cut(s)	163, 214, 292, 331
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	4 cut(s)	197, 331, 363, 382
SfaNI	GCATC	1 cut(s)	252
SfcI	CTRYAG	2 cut(s)	198, 207
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	5 cut(s)	21, 34, 57, 248, 398
SspMI	CTAG	1 cut(s)	383
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	238
TasI	AATT	5 cut(s)	21, 34, 57, 248, 398
TatI	WGTACW	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	68
TscAI	CASTG	3 cut(s)	91, 133, 145
TseI	GCWGC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	3 cut(s)	91, 133, 145
XapI	RAATTY	3 cut(s)	34, 57, 248
XceI	RCATGY	1 cut(s)	421
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.