SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 80, 83, 86 |
| AfaI | GTAC | 1 cut(s) | 105 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 92 |
| AgeI | ACCGGT | 1 cut(s) | 205 |
| AgsI | TTSAA | 1 cut(s) | 198 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 123 |
| Alw26I | GTCTC | 1 cut(s) | 66 |
| AoxI | GGCC | 1 cut(s) | 94 |
| AsiGI | ACCGGT | 1 cut(s) | 205 |
| AspS9I | GGNCC | 1 cut(s) | 95 |
| AsuHPI | GGTGA | 1 cut(s) | 5 |
| BauI | CACGAG | 1 cut(s) | 56 |
| BccI | CCATC | 2 cut(s) | 30, 42 |
| BcoDI | GTCTC | 1 cut(s) | 66 |
| BfaI | CTAG | 1 cut(s) | 221 |
| BglII | AGATCT | 1 cut(s) | 217 |
| BisI | GCNGC | 2 cut(s) | 83, 86 |
| BlsI | GCNGC | 2 cut(s) | 84, 87 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 123 |
| BmgT120I | GGNCC | 1 cut(s) | 95 |
| BsaAI | YACGTR | 1 cut(s) | 162 |
| BsaBI | GATNNNNATC | 1 cut(s) | 222 |
| BsaWI | WCCGGW | 1 cut(s) | 205 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 92 |
| Bse118I | RCCGGY | 3 cut(s) | 92, 133, 205 |
| Bse1I | ACTGG | 2 cut(s) | 107, 267 |
| Bse8I | GATNNNNATC | 1 cut(s) | 222 |
| BseJI | GATNNNNATC | 1 cut(s) | 222 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 92 |
| BseNI | ACTGG | 2 cut(s) | 107, 267 |
| BseRI | GAGGAG | 1 cut(s) | 66 |
| BshFI | GGCC | 1 cut(s) | 96 |
| BshTI | ACCGGT | 1 cut(s) | 205 |
| BsiSI | CCGG | 3 cut(s) | 93, 134, 206 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 92 |
| BsmAI | GTCTC | 1 cut(s) | 66 |
| BsmI | GAATGC | 1 cut(s) | 211 |
| BsnI | GGCC | 1 cut(s) | 96 |
| Bsp143I | GATC | 2 cut(s) | 217, 223 |
| BspACI | CCGC | 3 cut(s) | 80, 83, 86 |
| BspANI | GGCC | 1 cut(s) | 96 |
| BspHI | TCATGA | 1 cut(s) | 226 |
| BsrFI | RCCGGY | 3 cut(s) | 92, 133, 205 |
| BsrI | ACTGG | 2 cut(s) | 107, 267 |
| BssAI | RCCGGY | 3 cut(s) | 92, 133, 205 |
| BssMI | GATC | 2 cut(s) | 217, 223 |
| BssSI | CACGAG | 1 cut(s) | 56 |
| Bst2BI | CACGAG | 1 cut(s) | 56 |
| Bst4CI | ACNGT | 2 cut(s) | 71, 103 |
| BstBAI | YACGTR | 1 cut(s) | 162 |
| BstKTI | GATC | 2 cut(s) | 220, 226 |
| BstMAI | GTCTC | 1 cut(s) | 66 |
| BstMBI | GATC | 2 cut(s) | 217, 223 |
| BstNSI | RCATGY | 1 cut(s) | 236 |
| BstSNI | TACGTA | 1 cut(s) | 162 |
| BstX2I | RGATCY | 1 cut(s) | 217 |
| BstYI | RGATCY | 1 cut(s) | 217 |
| BsuRI | GGCC | 1 cut(s) | 96 |
| BtsIMutI | CAGTG | 2 cut(s) | 67, 260 |
| CciI | TCATGA | 1 cut(s) | 226 |
| Cfr10I | RCCGGY | 3 cut(s) | 92, 133, 205 |
| Cfr13I | GGNCC | 1 cut(s) | 95 |
| Csp6I | GTAC | 1 cut(s) | 104 |
| CspAI | ACCGGT | 1 cut(s) | 205 |
| CviAII | CATG | 6 cut(s) | 47, 179, 192, 227, 233, 242 |
| CviJI | RGCY | 1 cut(s) | 96 |
| CviKI_1 | RGCY | 1 cut(s) | 96 |
| CviQI | GTAC | 1 cut(s) | 104 |
| DpnI | GATC | 2 cut(s) | 219, 225 |
| DpnII | GATC | 2 cut(s) | 217, 223 |
| DriI | GACNNNNNGTC | 1 cut(s) | 123 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 123 |
| EciI | GGCGGA | 1 cut(s) | 69 |
| Eco105I | TACGTA | 1 cut(s) | 162 |
| FaeI | CATG | 6 cut(s) | 50, 182, 195, 230, 236, 245 |
| FaiI | YATR | 8 cut(s) | 48, 141, 159, 180, 193, 228, 234, 243 |
| FatI | CATG | 6 cut(s) | 46, 178, 191, 226, 232, 241 |
| Fnu4HI | GCNGC | 2 cut(s) | 83, 86 |
| Fsp4HI | GCNGC | 2 cut(s) | 83, 86 |
| FspBI | CTAG | 1 cut(s) | 221 |
| GluI | GCNGC | 2 cut(s) | 83, 86 |
| HaeIII | GGCC | 1 cut(s) | 96 |
| HapII | CCGG | 3 cut(s) | 93, 134, 206 |
| Hin1II | CATG | 6 cut(s) | 50, 182, 195, 230, 236, 245 |
| HinfI | GANTC | 3 cut(s) | 4, 59, 124 |
| HpaII | CCGG | 3 cut(s) | 93, 134, 206 |
| HphI | GGTGA | 1 cut(s) | 5 |
| Hpy188I | TCNGA | 2 cut(s) | 117, 217 |
| Hpy188III | TCNNGA | 4 cut(s) | 56, 167, 221, 227 |
| Hpy99I | CGWCG | 1 cut(s) | 121 |
| HpyCH4III | ACNGT | 2 cut(s) | 71, 103 |
| HpyCH4IV | ACGT | 2 cut(s) | 39, 161 |
| HpyCH4V | TGCA | 3 cut(s) | 182, 211, 236 |
| HpySE526I | ACGT | 2 cut(s) | 39, 161 |
| Hsp92II | CATG | 6 cut(s) | 50, 182, 195, 230, 236, 245 |
| Kzo9I | GATC | 2 cut(s) | 217, 223 |
| LpnPI | CCDG | 6 cut(s) | 106, 120, 147, 152, 219, 248 |
| MaeI | CTAG | 1 cut(s) | 221 |
| MaeII | ACGT | 2 cut(s) | 39, 161 |
| MaeIII | GTNAC | 2 cut(s) | 53, 248 |
| MalI | GATC | 2 cut(s) | 219, 225 |
| MboI | GATC | 2 cut(s) | 217, 223 |
| MflI | RGATCY | 1 cut(s) | 217 |
| MluCI | AATT | 1 cut(s) | 301 |
| MlyI | GAGTC | 2 cut(s) | 68, 133 |
| MmeI | TCCRAC | 1 cut(s) | 140 |
| MnlI | CCTC | 4 cut(s) | 84, 87, 138, 239 |
| MslI | CAYNNNNRTG | 3 cut(s) | 27, 190, 231 |
| MspI | CCGG | 3 cut(s) | 93, 134, 206 |
| Mva1269I | GAATGC | 1 cut(s) | 211 |
| NdeII | GATC | 2 cut(s) | 217, 223 |
| NlaIII | CATG | 6 cut(s) | 50, 182, 195, 230, 236, 245 |
| NmuCI | GTSAC | 1 cut(s) | 53 |
| NspI | RCATGY | 1 cut(s) | 236 |
| PagI | TCATGA | 1 cut(s) | 226 |
| PctI | GAATGC | 1 cut(s) | 211 |
| PinAI | ACCGGT | 1 cut(s) | 205 |
| PkrI | GCNGC | 2 cut(s) | 84, 87 |
| PleI | GAGTC | 2 cut(s) | 67, 132 |
| PpsI | GAGTC | 2 cut(s) | 67, 132 |
| Ppu21I | YACGTR | 1 cut(s) | 162 |
| PspPI | GGNCC | 1 cut(s) | 95 |
| PsuI | RGATCY | 1 cut(s) | 217 |
| RsaI | GTAC | 1 cut(s) | 105 |
| RsaNI | GTAC | 1 cut(s) | 104 |
| RseI | CAYNNNNRTG | 3 cut(s) | 27, 190, 231 |
| SatI | GCNGC | 2 cut(s) | 83, 86 |
| Sau3AI | GATC | 2 cut(s) | 217, 223 |
| Sau96I | GGNCC | 1 cut(s) | 95 |
| SchI | GAGTC | 2 cut(s) | 68, 133 |
| SetI | ASST | 3 cut(s) | 42, 164, 250 |
| SgrAI | CRCCGGYG | 1 cut(s) | 205 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 27, 190, 231 |
| SnaBI | TACGTA | 1 cut(s) | 162 |
| Sse9I | AATT | 1 cut(s) | 301 |
| SsiI | CCGC | 3 cut(s) | 80, 83, 86 |
| SspMI | CTAG | 1 cut(s) | 221 |
| TaaI | ACNGT | 2 cut(s) | 71, 103 |
| TaiI | ACGT | 2 cut(s) | 42, 164 |
| TasI | AATT | 1 cut(s) | 301 |
| TauI | GCSGC | 2 cut(s) | 85, 88 |
| TscAI | CASTG | 2 cut(s) | 74, 267 |
| TseFI | GTSAC | 1 cut(s) | 53 |
| Tsp45I | GTSAC | 1 cut(s) | 53 |
| TspDTI | ATGAA | 1 cut(s) | 243 |
| TspGWI | ACGGA | 2 cut(s) | 41, 134 |
| TspRI | CASTG | 2 cut(s) | 74, 267 |
| XbaI | TCTAGA | 1 cut(s) | 220 |
| XceI | RCATGY | 1 cut(s) | 236 |
| XspI | CTAG | 1 cut(s) | 221 |