MD14G1203200.v1.1
MYB Family

Transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
29170197 .. 29172293
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1203200.v1.1.491

Sequence Viewer

Length: 954 bp
ATGGGAAAGTCTAGCGGCTATCCACCGGCGTCAGGCATAAAGAAAGGTTCATGGACCCCTGAAGAGGACAAAAGGCTTTTAGCTTACATTCAACTACACGGCCATGGAAGCTGGCGTTCCTTGCCCCAGAAAGCTGGTCTAAAAAGATGCGGGAAGAGCTGTAGGCTAAGGTGGAGAAACTACCTCAGACCTGATATTAAGAGGGGAAATTTCAGTTTGCACGAAGACCAAACCATCATTCAACTCCATGCACTTCTTGGCAACAGGTGGTCGGCCATAGCTGCACACTTACCAAAGAGAACAGACAATGAGATCAAGAACTACTGGAACGCAAATCTGAAGAAAAGGTTGGCCAAGATAGGATTTGACCCTGTAACCCACAAGTCCAAGGCTGCCATTCTTGCCTCTGCAAATGGCGACCCCAAAAAGTTGTCAAATCTCAGCCACATTGCTCAGTGGGAAAGTGCCAGGCTTCAAGCCGAGGCCAGGTTCGTCAAAGAATCCAAACTACGTATGCATGAATCTGCGCCGGCGGTGTCGTTTTTCGATGATTATCATCAGCTTGCTCCACCACTAGTTCCACAGTGCCTTGACATACTAGAAGCATCCGCATGGGAAAGCCTAATATCCATGTCAAAGTCATCGTCAAGATCCGCTGCCCTAACCAATGATATAAACGGCCTGGATCATCATCATGTTCATGACCATGGTCTTAATATGAACGGCCAAGATTATGGTCCTAATTTTCAGGTTCCAATATCTGATCAACAATTATCAAGCCTGATGGGATTTGATGAAGCAACGGCGCCATCAGTAGCCACTGGATCGATGAATATCAATGAACATTTCGGTCAATATTGTGGTAATGAATGCAGTGAATTATTGGTGGTCCTCCATCAAAATATCGGTTTTGAATCCGAAGATGCTTGGACTAGTTTGGAAAAATTAATGTAA

Protein Analysis

318

Amino Acids

35.4

Weight (kDa)

8.5

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 2.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 78 2.4e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 111 4.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 123 6.4e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000583)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 805
AciI CCGC 5 cut(s) 15, 150, 533, 609, 654
AclWI GGATC 3 cut(s) 645, 693, 832
AcoI YGGCCR 4 cut(s) 100, 273, 351, 724
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 2 cut(s) 81, 359
AcyI GRCGYC 2 cut(s) 29, 806
AfiI CCNNNNNNNGG 3 cut(s) 32, 64, 486
AgsI TTSAA 4 cut(s) 92, 242, 476, 914
AhlI ACTAGT 2 cut(s) 574, 932
AjnI CCWGG 3 cut(s) 467, 485, 681
AjuI GAANNNNNNNTTGG 4 cut(s) 222, 254, 332, 364
AluBI AGCT 6 cut(s) 83, 111, 134, 159, 281, 562
AluI AGCT 6 cut(s) 83, 111, 134, 159, 281, 562
AlwI GGATC 3 cut(s) 645, 693, 832
AoxI GGCC 6 cut(s) 100, 273, 351, 483, 679, 724
ApeKI GCWGC 3 cut(s) 281, 392, 656
ApoI RAATTY 1 cut(s) 208
ArsI GACNNNNNNTTYG 2 cut(s) 629, 661
AseI ATTAAT 1 cut(s) 947
AspLEI GCGC 2 cut(s) 529, 808
AspS9I GGNCC 3 cut(s) 54, 737, 889
AvaII GGWCC 3 cut(s) 54, 737, 889
BalI TGGCCA 1 cut(s) 353
BanI GGYRCC 1 cut(s) 805
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 3 cut(s) 268, 379, 643
BccI CCATC 4 cut(s) 242, 778, 817, 903
BceAI ACGGC 4 cut(s) 115, 694, 739, 819
BciT130I CCWGG 3 cut(s) 469, 487, 683
BclI TGATCA 1 cut(s) 763
BcuI ACTAGT 2 cut(s) 574, 932
BfaI CTAG 4 cut(s) 12, 575, 599, 933
BfmI CTRYAG 1 cut(s) 160
BfoI RGCGCY 1 cut(s) 809
BisI GCNGC 4 cut(s) 16, 282, 393, 657
BlsI GCNGC 4 cut(s) 17, 283, 394, 658
Bme1390I CCNGG 3 cut(s) 469, 487, 683
Bme18I GGWCC 3 cut(s) 54, 737, 889
BmgT120I GGNCC 3 cut(s) 54, 737, 889
BmiI GGNNCC 3 cut(s) 56, 753, 807
BmrFI CCNGG 3 cut(s) 469, 487, 683
BmsI GCATC 3 cut(s) 137, 614, 913
BoxI GACNNNNGTC 1 cut(s) 708
BpiI GAAGAC 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 167
Bsa29I ATCGAT 1 cut(s) 827
BsaAI YACGTR 1 cut(s) 512
BsaBI GATNNNNATC 4 cut(s) 552, 555, 690, 833
BsaHI GRCGYC 2 cut(s) 29, 806
BsaJI CCNNGG 4 cut(s) 103, 387, 480, 706
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 64, 486
Bse118I RCCGGY 2 cut(s) 25, 529
Bse1I ACTGG 2 cut(s) 329, 826
Bse3DI GCAATG 1 cut(s) 447
Bse8I GATNNNNATC 4 cut(s) 552, 555, 690, 833
BseBI CCWGG 3 cut(s) 469, 487, 683
BseCI ATCGAT 1 cut(s) 827
BseDI CCNNGG 4 cut(s) 103, 387, 480, 706
BseGI GGATG 1 cut(s) 605
BseJI GATNNNNATC 4 cut(s) 552, 555, 690, 833
BseLI CCNNNNNNNGG 3 cut(s) 32, 64, 486
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 3 cut(s) 199, 454, 467
BseNI ACTGG 2 cut(s) 329, 826
BseXI GCAGC 3 cut(s) 268, 379, 643
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 6 cut(s) 102, 275, 353, 485, 681, 726
BshNI GGYRCC 1 cut(s) 805
BshVI ATCGAT 1 cut(s) 827
BsiSI CCGG 2 cut(s) 26, 530
BslI CCNNNNNNNGG 3 cut(s) 32, 64, 486
BsmI GAATGC 1 cut(s) 875
BsnI GGCC 6 cut(s) 102, 275, 353, 485, 681, 726
Bsp143I GATC 5 cut(s) 312, 650, 685, 763, 824
Bsp19I CCATGG 2 cut(s) 103, 706
BspACI CCGC 5 cut(s) 15, 150, 533, 609, 654
BspANI GGCC 6 cut(s) 102, 275, 353, 485, 681, 726
BspCNI CTCAG 3 cut(s) 198, 453, 466
BspDI ATCGAT 1 cut(s) 827
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 3 cut(s) 56, 753, 807
BspPI GGATC 3 cut(s) 645, 693, 832
BspQI GCTCTTC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 805
BsrDI GCAATG 1 cut(s) 447
BsrFI RCCGGY 2 cut(s) 25, 529
BsrI ACTGG 2 cut(s) 329, 826
BssAI RCCGGY 2 cut(s) 25, 529
BssECI CCNNGG 4 cut(s) 103, 387, 480, 706
BssMI GATC 5 cut(s) 312, 650, 685, 763, 824
BssNI GRCGYC 2 cut(s) 29, 806
BssT1I CCWWGG 3 cut(s) 103, 387, 706
Bst2UI CCWGG 3 cut(s) 469, 487, 683
Bst4CI ACNGT 1 cut(s) 585
Bst6I CTCTTC 2 cut(s) 57, 149
BstACI GRCGYC 2 cut(s) 29, 806
BstBAI YACGTR 1 cut(s) 512
BstC8I GCNNGC 3 cut(s) 113, 531, 564
BstDEI CTNAG 4 cut(s) 167, 185, 440, 453
BstDSI CCRYGG 2 cut(s) 103, 706
BstF5I GGATG 1 cut(s) 605
BstH2I RGCGCY 1 cut(s) 809
BstHHI GCGC 2 cut(s) 529, 808
BstKTI GATC 5 cut(s) 315, 653, 688, 766, 827
BstMBI GATC 5 cut(s) 312, 650, 685, 763, 824
BstMWI GCNNNNNNNGC 5 cut(s) 108, 121, 156, 281, 401
BstNI CCWGG 3 cut(s) 469, 487, 683
BstPAI GACNNNNGTC 1 cut(s) 708
BstSCI CCNGG 3 cut(s) 467, 485, 681
BstSFI CTRYAG 1 cut(s) 160
BstSNI TACGTA 1 cut(s) 512
BstV1I GCAGC 3 cut(s) 268, 379, 643
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 650
BstXI CCANNNNNNTGG 2 cut(s) 134, 734
BstYI RGATCY 1 cut(s) 650
Bsu15I ATCGAT 1 cut(s) 827
BsuRI GGCC 6 cut(s) 102, 275, 353, 485, 681, 726
BsuTUI ATCGAT 1 cut(s) 827
BtgI CCRYGG 2 cut(s) 103, 706
BtsCI GGATG 1 cut(s) 605
BtsI GCAGTG 1 cut(s) 880
BtsIMutI CAGTG 4 cut(s) 461, 590, 819, 880
Cac8I GCNNGC 3 cut(s) 113, 531, 564
CciI TCATGA 1 cut(s) 700
CfoI GCGC 2 cut(s) 529, 808
Cfr10I RCCGGY 2 cut(s) 25, 529
Cfr13I GGNCC 3 cut(s) 54, 737, 889
ClaI ATCGAT 1 cut(s) 827
CseI GACGC 1 cut(s) 18
CviAII CATG 9 cut(s) 51, 104, 248, 518, 612, 631, 695, 701, 707
DdeI CTNAG 4 cut(s) 167, 185, 440, 453
DinI GGCGCC 1 cut(s) 807
DpnI GATC 5 cut(s) 314, 652, 687, 765, 826
DpnII GATC 5 cut(s) 312, 650, 685, 763, 824
EaeI YGGCCR 4 cut(s) 100, 273, 351, 724
Eam1104I CTCTTC 2 cut(s) 57, 149
EarI CTCTTC 2 cut(s) 57, 149
Eco105I TACGTA 1 cut(s) 512
Eco130I CCWWGG 3 cut(s) 103, 387, 706
Eco47I GGWCC 3 cut(s) 54, 737, 889
Eco57I CTGAAG 2 cut(s) 81, 359
EcoRII CCWGG 3 cut(s) 467, 485, 681
EcoT14I CCWWGG 3 cut(s) 103, 387, 706
EcoT22I ATGCAT 1 cut(s) 519
EgeI GGCGCC 1 cut(s) 807
EheI GGCGCC 1 cut(s) 807
ErhI CCWWGG 3 cut(s) 103, 387, 706
FaeI CATG 9 cut(s) 54, 107, 251, 521, 615, 634, 698, 704, 710
FatI CATG 9 cut(s) 50, 103, 247, 517, 611, 630, 694, 700, 706
FauI CCCGC 1 cut(s) 143
FbaI TGATCA 1 cut(s) 763
Fnu4HI GCNGC 4 cut(s) 16, 282, 393, 657
FokI GGATG 1 cut(s) 592
Fsp4HI GCNGC 4 cut(s) 16, 282, 393, 657
FspBI CTAG 4 cut(s) 12, 575, 599, 933
GlaI GCGC 2 cut(s) 528, 807
GluI GCNGC 4 cut(s) 16, 282, 393, 657
HaeII RGCGCY 1 cut(s) 809
HaeIII GGCC 6 cut(s) 102, 275, 353, 485, 681, 726
HapII CCGG 2 cut(s) 26, 530
HgaI GACGC 1 cut(s) 18
HhaI GCGC 2 cut(s) 529, 808
Hin1I GRCGYC 2 cut(s) 29, 806
Hin1II CATG 9 cut(s) 54, 107, 251, 521, 615, 634, 698, 704, 710
Hin6I GCGC 2 cut(s) 527, 806
HinP1I GCGC 2 cut(s) 527, 806
HinfI GANTC 3 cut(s) 500, 521, 914
HpaII CCGG 2 cut(s) 26, 530
Hpy188I TCNGA 4 cut(s) 188, 339, 763, 919
Hpy188III TCNNGA 3 cut(s) 316, 648, 701
HpyCH4III ACNGT 1 cut(s) 585
HpyCH4IV ACGT 1 cut(s) 511
HpyCH4V TGCA 6 cut(s) 220, 251, 284, 410, 517, 873
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 121, 156, 281, 401
HpyF3I CTNAG 4 cut(s) 167, 185, 440, 453
HpySE526I ACGT 1 cut(s) 511
Hsp92I GRCGYC 2 cut(s) 29, 806
Hsp92II CATG 9 cut(s) 54, 107, 251, 521, 615, 634, 698, 704, 710
HspAI GCGC 2 cut(s) 527, 806
KasI GGCGCC 1 cut(s) 805
KroI GCCGGC 1 cut(s) 529
KroNI GCCGGC 1 cut(s) 531
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 5 cut(s) 312, 650, 685, 763, 824
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 1 cut(s) 571
Lsp1109I GCAGC 3 cut(s) 268, 379, 643
LweI GCATC 3 cut(s) 137, 614, 913
MaeI CTAG 4 cut(s) 12, 575, 599, 933
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 1 cut(s) 373
MalI GATC 5 cut(s) 314, 652, 687, 765, 826
MboI GATC 5 cut(s) 312, 650, 685, 763, 824
MboII GAAGA 5 cut(s) 74, 166, 236, 352, 932
MflI RGATCY 1 cut(s) 650
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 5 cut(s) 208, 742, 770, 878, 944
MluNI TGGCCA 1 cut(s) 353
Mly113I GGCGCC 1 cut(s) 806
MnlI CCTC 6 cut(s) 58, 194, 195, 415, 475, 902
Mox20I TGGCCA 1 cut(s) 353
Mph1103I ATGCAT 1 cut(s) 519
MreI CGCCGGCG 1 cut(s) 529
MroNI GCCGGC 1 cut(s) 529
MscI TGGCCA 1 cut(s) 353
MseI TTAA 3 cut(s) 198, 714, 947
MslI CAYNNNNRTG 5 cut(s) 102, 610, 693, 699, 705
Msp20I TGGCCA 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 2 cut(s) 26, 530
MspR9I CCNGG 3 cut(s) 469, 487, 683
Mva1269I GAATGC 1 cut(s) 875
MvaI CCWGG 3 cut(s) 469, 487, 683
MwoI GCNNNNNNNGC 5 cut(s) 108, 121, 156, 281, 401
NaeI GCCGGC 1 cut(s) 531
NarI GGCGCC 1 cut(s) 806
NcoI CCATGG 2 cut(s) 103, 706
NdeII GATC 5 cut(s) 312, 650, 685, 763, 824
NgoMIV GCCGGC 1 cut(s) 529
NlaIII CATG 9 cut(s) 54, 107, 251, 521, 615, 634, 698, 704, 710
NlaIV GGNNCC 3 cut(s) 56, 753, 807
NmeAIII GCCGAG 1 cut(s) 505
NsiI ATGCAT 1 cut(s) 519
PagI TCATGA 1 cut(s) 700
PciSI GCTCTTC 1 cut(s) 149
PctI GAATGC 1 cut(s) 875
PdiI GCCGGC 1 cut(s) 531
PfeI GAWTC 3 cut(s) 500, 521, 914
PkrI GCNGC 4 cut(s) 17, 283, 394, 658
PluTI GGCGCC 1 cut(s) 809
Ppu21I YACGTR 1 cut(s) 512
PshAI GACNNNNGTC 1 cut(s) 708
PshBI ATTAAT 1 cut(s) 947
Psp6I CCWGG 3 cut(s) 467, 485, 681
PspGI CCWGG 3 cut(s) 467, 485, 681
PspN4I GGNNCC 3 cut(s) 56, 753, 807
PspPI GGNCC 3 cut(s) 54, 737, 889
PsuI RGATCY 1 cut(s) 650
RseI CAYNNNNRTG 5 cut(s) 102, 610, 693, 699, 705
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 3 cut(s) 198, 714, 947
SatI GCNGC 4 cut(s) 16, 282, 393, 657
Sau3AI GATC 5 cut(s) 312, 650, 685, 763, 824
Sau96I GGNCC 3 cut(s) 54, 737, 889
ScrFI CCNGG 3 cut(s) 469, 487, 683
SfaNI GCATC 3 cut(s) 137, 614, 913
SfcI CTRYAG 1 cut(s) 160
SfoI GGCGCC 1 cut(s) 807
SgrAI CRCCGGYG 2 cut(s) 25, 529
SinI GGWCC 3 cut(s) 54, 737, 889
SmiMI CAYNNNNRTG 5 cut(s) 102, 610, 693, 699, 705
SnaBI TACGTA 1 cut(s) 512
SpeI ACTAGT 2 cut(s) 574, 932
Sse9I AATT 5 cut(s) 208, 742, 770, 878, 944
SsiI CCGC 5 cut(s) 15, 150, 533, 609, 654
SspDI GGCGCC 1 cut(s) 805
SspI AATATT 1 cut(s) 857
SspMI CTAG 4 cut(s) 12, 575, 599, 933
StyD4I CCNGG 3 cut(s) 467, 485, 681
StyI CCWWGG 3 cut(s) 103, 387, 706
TaaI ACNGT 1 cut(s) 585
TaiI ACGT 1 cut(s) 514
TaqI TCGA 2 cut(s) 546, 827
TaqII GACCGA 1 cut(s) 839
TasI AATT 5 cut(s) 208, 742, 770, 878, 944
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 3 cut(s) 500, 521, 914
Tru1I TTAA 3 cut(s) 198, 714, 947
Tru9I TTAA 3 cut(s) 198, 714, 947
TscAI CASTG 4 cut(s) 461, 590, 826, 880
TseI GCWGC 3 cut(s) 281, 392, 656
TspDTI ATGAA 8 cut(s) 39, 534, 689, 734, 810, 845, 855, 882
TspRI CASTG 4 cut(s) 461, 590, 826, 880
VpaK11BI GGWCC 3 cut(s) 54, 737, 889
VspI ATTAAT 1 cut(s) 947
XapI RAATTY 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 254
XspI CTAG 4 cut(s) 12, 575, 599, 933
Zsp2I ATGCAT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.