Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Forward (+)

3154130 .. 3155916

Gene Structure 1787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG046400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGGAAGTCCCGAACGTTAACTAACAGCACTGCTACGACTTCGGAGATAAAAAGAGGGCCATGGACTCCTCAAGAGGACAAGAAGCTCTTTGCTTTCATTCAACAACATGGCCATGGAAGCTGGCGGTCCTTGCCCGAGAAAGCTGGTTTACAAAGATGTGGGAAGAGCTGCAGGCTAAGATGGAGAAACTACCTAAACCCTGCTATTAAGAGAGGAAATTTCAGTTTGCAGGAAGACCAGACCATCATTCAGCTTCATGCACTTCTCGGCAACAGGTGGTCAGCCATAGCTGCGAACTTACCAAGGAGAACAGACAATGAGATAAAGAACTACTGGAACACACATCTAAAGAAGAGGTTAGCCAAGATAGGGTTTGATCCTGTAACCCACAGGCCCAAGACCGCCATCCTTGCCTCTGCTAATGGCGACCCGAAGAACCTCTCAAACCTCAGCCACATAGCTCAGTGGGAAAGTGCTAGGCTTCAAGCAGAAGCTAGATTTGTGAGACAGTCAAAACTACTCAAACCACCACAGTGCCTTGACTTCAATCTAAGAACATGGGAAACCCTAATGATGTCAAAGTCATTAGCTGCAGGCGGTGGAGGTGGCGACGAAGCCGGTGGTGTTGGTCGTGCAACTAATGTTGTTCAAGAGGTTGGTTCATTCGGTAATTTTTATGGTGTACTTGGTAATAATGGTAGACAGTTTGAGGCTCCAAAATTAACCAAATCAGCAGCTCCGGATTTCAATGGAGTTTCAGAGGAGAGTGGTACTGATGAATACGGTGACCTATTTGAGACACTACTACCCCAGGAGAGCTACAATAATACTGGGTTTGATGTCGTGGATGCTTGGACTTTGGAACAATGTAATGATATCAGTGCAGACTATCAAAATGTGATCATGAGCGGGGGGTTGAAAAACCCATTTATGTTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

314

Amino Acids

34.92

Weight (kDa)

9.21

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	19 - 66	9.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	22 - 82	1.8e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	72 - 117	2.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	75 - 127	2.8e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	912
AccI	GTMKAC	1 cut(s)	703
AccIII	TCCGGA	1 cut(s)	742
AciI	CCGC	4 cut(s)	127, 405, 600, 912
AclI	AACGTT	1 cut(s)	17
AclWI	GGATC	1 cut(s)	374
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	220
AfaI	GTAC	2 cut(s)	687, 775
AfiI	CCNNNNNNNGG	1 cut(s)	372
AgsI	TTSAA	6 cut(s)	104, 488, 550, 653, 751, 922
AjnI	CCWGG	1 cut(s)	813
AleI	CACNNNNGTG	1 cut(s)	535
Alw26I	GTCTC	2 cut(s)	502, 794
AlwI	GGATC	1 cut(s)	374
Ama87I	CYCGRG	1 cut(s)	137
Aor13HI	TCCGGA	1 cut(s)	742
AoxI	GGCC	3 cut(s)	59, 112, 395
ApeKI	GCWGC	4 cut(s)	171, 293, 593, 737
ApoI	RAATTY	1 cut(s)	220
AspS9I	GGNCC	3 cut(s)	59, 129, 396
AsuHPI	GGTGA	1 cut(s)	800
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	243
BbvCI	CCTCAGC	1 cut(s)	452
BbvI	GCAGC	4 cut(s)	158, 280, 580, 749
BccI	CCATC	3 cut(s)	177, 254, 416
BciT130I	CCWGG	1 cut(s)	815
BclI	TGATCA	1 cut(s)	903
BcoDI	GTCTC	2 cut(s)	502, 794
BfaI	CTAG	2 cut(s)	480, 498
BfmI	CTRYAG	2 cut(s)	172, 594
BisI	GCNGC	4 cut(s)	172, 294, 594, 738
BlsI	GCNGC	4 cut(s)	173, 295, 595, 739
Bme1390I	CCNGG	1 cut(s)	815
Bme18I	GGWCC	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	3 cut(s)	59, 129, 396
BmiI	GGNNCC	1 cut(s)	717
BmrFI	CCNGG	1 cut(s)	815
BmrI	ACTGGG	1 cut(s)	843
BmsI	GCATC	1 cut(s)	841
BmuI	ACTGGG	1 cut(s)	843
BpiI	GAAGAC	1 cut(s)	243
Bpu10I	CCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	57
BsaJI	CCNNGG	4 cut(s)	62, 115, 305, 813
BsaWI	WCCGGW	1 cut(s)	742
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse118I	RCCGGY	1 cut(s)	620
Bse1I	ACTGG	3 cut(s)	341, 838, 940
BseAI	TCCGGA	1 cut(s)	742
BseBI	CCWGG	1 cut(s)	815
BseDI	CCNNGG	4 cut(s)	62, 115, 305, 813
BseGI	GGATG	2 cut(s)	408, 856
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseMII	CTCAG	2 cut(s)	466, 479
BseNI	ACTGG	3 cut(s)	341, 838, 940
BseRI	GAGGAG	2 cut(s)	60, 779
BseXI	GCAGC	4 cut(s)	158, 280, 580, 749
BsgI	GTGCAG	1 cut(s)	906
BshFI	GGCC	3 cut(s)	61, 114, 397
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	621, 743
BslI	CCNNNNNNNGG	1 cut(s)	372
BsmAI	GTCTC	2 cut(s)	502, 794
BsnI	GGCC	3 cut(s)	61, 114, 397
BsoBI	CYCGRG	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	742
Bsp143I	GATC	2 cut(s)	379, 903
Bsp19I	CCATGG	2 cut(s)	62, 115
BspACI	CCGC	4 cut(s)	127, 405, 600, 912
BspANI	GGCC	3 cut(s)	61, 114, 397
BspCNI	CTCAG	2 cut(s)	465, 478
BspEI	TCCGGA	1 cut(s)	742
BspHI	TCATGA	1 cut(s)	906
BspLI	GGNNCC	1 cut(s)	717
BspMAI	CTGCAG	2 cut(s)	176, 598
BspPI	GGATC	1 cut(s)	374
BspQI	GCTCTTC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	912
BsrFI	RCCGGY	1 cut(s)	620
BsrI	ACTGG	3 cut(s)	341, 838, 940
BssAI	RCCGGY	1 cut(s)	620
BssECI	CCNNGG	4 cut(s)	62, 115, 305, 813
BssMI	GATC	2 cut(s)	379, 903
BssT1I	CCWWGG	3 cut(s)	62, 115, 305
Bst2UI	CCWGG	1 cut(s)	815
Bst4CI	ACNGT	4 cut(s)	513, 537, 708, 788
Bst6I	CTCTTC	2 cut(s)	161, 350
BstC8I	GCNNGC	3 cut(s)	125, 176, 598
BstDEI	CTNAG	4 cut(s)	179, 452, 465, 554
BstDSI	CCRYGG	2 cut(s)	62, 115
BstEII	GGTNACC	1 cut(s)	788
BstF5I	GGATG	2 cut(s)	408, 856
BstKTI	GATC	2 cut(s)	382, 906
BstMAI	GTCTC	2 cut(s)	502, 794
BstMBI	GATC	2 cut(s)	379, 903
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 133, 293, 413
BstNI	CCWGG	1 cut(s)	815
BstPI	GGTNACC	1 cut(s)	788
BstSCI	CCNGG	1 cut(s)	813
BstSFI	CTRYAG	2 cut(s)	172, 594
BstV1I	GCAGC	4 cut(s)	158, 280, 580, 749
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	61, 114, 397
BtgI	CCRYGG	2 cut(s)	62, 115
BtsCI	GGATG	2 cut(s)	408, 856
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	4 cut(s)	30, 473, 542, 889
Cac8I	GCNNGC	3 cut(s)	125, 176, 598
CciI	TCATGA	1 cut(s)	906
Cfr10I	RCCGGY	1 cut(s)	620
Cfr13I	GGNCC	3 cut(s)	59, 129, 396
Csp6I	GTAC	2 cut(s)	686, 774
CviAII	CATG	6 cut(s)	63, 110, 116, 260, 561, 907
CviQI	GTAC	2 cut(s)	686, 774
DdeI	CTNAG	4 cut(s)	179, 452, 465, 554
DpnI	GATC	2 cut(s)	381, 905
DpnII	GATC	2 cut(s)	379, 903
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	161, 350
EarI	CTCTTC	2 cut(s)	161, 350
Eco130I	CCWWGG	3 cut(s)	62, 115, 305
Eco32I	GATATC	1 cut(s)	880
Eco47I	GGWCC	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	788
EcoO65I	GGTNACC	1 cut(s)	788
EcoRII	CCWGG	1 cut(s)	813
EcoRV	GATATC	1 cut(s)	880
EcoT14I	CCWWGG	3 cut(s)	62, 115, 305
ErhI	CCWWGG	3 cut(s)	62, 115, 305
FaeI	CATG	6 cut(s)	66, 113, 119, 263, 564, 910
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	6 cut(s)	62, 109, 115, 259, 560, 906
FauI	CCCGC	1 cut(s)	905
FbaI	TGATCA	1 cut(s)	903
FblI	GTMKAC	1 cut(s)	703
Fnu4HI	GCNGC	4 cut(s)	172, 294, 594, 738
FokI	GGATG	2 cut(s)	395, 863
Fsp4HI	GCNGC	4 cut(s)	172, 294, 594, 738
FspBI	CTAG	2 cut(s)	480, 498
GluI	GCNGC	4 cut(s)	172, 294, 594, 738
HaeIII	GGCC	3 cut(s)	61, 114, 397
HapII	CCGG	2 cut(s)	621, 743
Hin1II	CATG	6 cut(s)	66, 113, 119, 263, 564, 910
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	67
HpaI	GTTAAC	1 cut(s)	21
HpaII	CCGG	2 cut(s)	621, 743
HphI	GGTGA	1 cut(s)	800
Hpy166II	GTNNAC	4 cut(s)	21, 152, 686, 704
Hpy188I	TCNGA	2 cut(s)	46, 763
Hpy188III	TCNNGA	5 cut(s)	12, 74, 653, 743, 907
Hpy8I	GTNNAC	4 cut(s)	21, 152, 686, 704
Hpy99I	CGWCG	1 cut(s)	617
HpyCH4III	ACNGT	4 cut(s)	513, 537, 708, 788
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	6 cut(s)	174, 232, 263, 596, 638, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 133, 293, 413
HpyF3I	CTNAG	4 cut(s)	179, 452, 465, 554
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	6 cut(s)	66, 113, 119, 263, 564, 910
Kpn2I	TCCGGA	1 cut(s)	742
Ksp22I	TGATCA	1 cut(s)	903
KspAI	GTTAAC	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	379, 903
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	2 cut(s)	721, 745
Lsp1109I	GCAGC	4 cut(s)	158, 280, 580, 749
LweI	GCATC	1 cut(s)	841
MaeI	CTAG	2 cut(s)	480, 498
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	385, 788
MalI	GATC	2 cut(s)	381, 905
MbiI	CCGCTC	1 cut(s)	912
MboI	GATC	2 cut(s)	379, 903
MboII	GAAGA	4 cut(s)	178, 248, 367, 448
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	3 cut(s)	220, 673, 722
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	61
Mox20I	TGGCCA	1 cut(s)	114
MroI	TCCGGA	1 cut(s)	742
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	3 cut(s)	20, 210, 725
MslI	CAYNNNNRTG	2 cut(s)	114, 535
Msp20I	TGGCCA	1 cut(s)	114
MspI	CCGG	2 cut(s)	621, 743
MspR9I	CCNGG	1 cut(s)	815
MvaI	CCWGG	1 cut(s)	815
MwoI	GCNNNNNNNGC	4 cut(s)	120, 133, 293, 413
NcoI	CCATGG	2 cut(s)	62, 115
NdeII	GATC	2 cut(s)	379, 903
NlaIII	CATG	6 cut(s)	66, 113, 119, 263, 564, 910
NlaIV	GGNNCC	1 cut(s)	717
NmeAIII	GCCGAG	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	788
OliI	CACNNNNGTG	1 cut(s)	535
PagI	TCATGA	1 cut(s)	906
PciSI	GCTCTTC	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	173, 295, 595, 739
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp1406I	AACGTT	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	813
PspEI	GGTNACC	1 cut(s)	788
PspGI	CCWGG	1 cut(s)	813
PspN4I	GGNNCC	1 cut(s)	717
PspPI	GGNCC	3 cut(s)	59, 129, 396
PstI	CTGCAG	2 cut(s)	176, 598
RsaI	GTAC	2 cut(s)	687, 775
RsaNI	GTAC	2 cut(s)	686, 774
RseI	CAYNNNNRTG	2 cut(s)	114, 535
SapI	GCTCTTC	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	20, 210, 725
SatI	GCNGC	4 cut(s)	172, 294, 594, 738
Sau3AI	GATC	2 cut(s)	379, 903
Sau96I	GGNCC	3 cut(s)	59, 129, 396
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	815
SfaNI	GCATC	1 cut(s)	841
SfcI	CTRYAG	2 cut(s)	172, 594
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	2 cut(s)	114, 535
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	3 cut(s)	220, 673, 722
SsiI	CCGC	4 cut(s)	127, 405, 600, 912
SspMI	CTAG	2 cut(s)	480, 498
StyD4I	CCNGG	1 cut(s)	813
StyI	CCWWGG	3 cut(s)	62, 115, 305
TaaI	ACNGT	4 cut(s)	513, 537, 708, 788
TaiI	ACGT	1 cut(s)	20
TasI	AATT	3 cut(s)	220, 673, 722
TatI	WGTACW	1 cut(s)	685
Tru1I	TTAA	3 cut(s)	20, 210, 725
Tru9I	TTAA	3 cut(s)	20, 210, 725
TscAI	CASTG	4 cut(s)	37, 473, 542, 889
TseFI	GTSAC	1 cut(s)	788
TseI	GCWGC	4 cut(s)	171, 293, 593, 737
Tsp45I	GTSAC	1 cut(s)	788
TspDTI	ATGAA	4 cut(s)	88, 248, 654, 795
TspRI	CASTG	4 cut(s)	37, 473, 542, 889
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	703
XspI	CTAG	2 cut(s)	480, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.