Rmu_sc0001206.1_g000043
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001206.1
Physical Location & Seq
Forward (+)
145642 .. 147593
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001206.1_g000043.1.cds

Sequence Viewer

Length: 1128 bp
atgggtcggtcaccgtgctgtgacaaagtcgggttaaagaaaggtccgtggactccagaagaagaccagaagctcttggcttatatcgaagaacatggccatggaagttggagagccctcccaatcaaagctgggcttcagagatgtggaaagagctgtagactgagatggactaattatctgagaccagacatcaagaggggaaaatttagtttgcaagaagagcagaccattattcaactccatgccctcttaggcaacaggtggtcggcgatagcaactcacttgccgaagagaacagacaatgagataaagaactactggaacacacatctcaagaagcgcttagccaaaatgggaatcgatccggttacccacaagccgaaaaacgacgccctgctctccactcacgacggtcagtccaagaacgccgccaatctcagccacatggctcagtgggaaagcgccaggcttgaagccgaagcccggctcgttagggaatcaaagctccggtcgcacaactccctcatcaatcagctgacctcagcagctgcggccgctgcggcggctgctgcttcaacttcatcctcatcagctcatcagttgcttttcatgaagggtcaaagtcttgagtctccaacatctacactcaccacttacaactctgagaatgtggtacctgggattatgccgtcgtctatgattgagtttgtgggttgttccggtgcttcttccggtgatcatcaagatcagacggctgcaattaacgccaaagaagaaggggacgtacaagtacaagattggaaactagggtttgggaacgtgccgtcatcatcaacccactttggccttcatgataatgtcacatggacaagtaataatgaacaagttcatcatgatcggggaattggcagcgttgatgaggtggcggatcaagaagggtttaccaacctcttgcttaataactccgttgatcgtgatcagagtatgtcggatggaggcggtggtgattcagaaaacggtggtagtgccgggagtgactattatgaagataacaagaattactggaacagtattctgaatttggtgaattcttctccctctcatgatgattctccaatcttctaa

Protein Analysis

375

Amino Acids

41.05

Weight (kDa)

6.14

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000583)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 676
AccB1I GGYRCC 1 cut(s) 676
AccI GTMKAC 1 cut(s) 160
AciI CCGC 7 cut(s) 432, 554, 558, 563, 566, 929, 1002
AclWI GGATC 2 cut(s) 359, 939
AcoI YGGCCR 2 cut(s) 97, 555
AcsI RAATTY 3 cut(s) 206, 1081, 1090
AcuI CTGAAG 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 393
AfaI GTAC 3 cut(s) 678, 789, 795
AfeI AGCGCT 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 486
AgsI TTSAA 3 cut(s) 239, 476, 579
AhdI GACNNNNNGTC 1 cut(s) 418
AjnI CCWGG 2 cut(s) 467, 679
AluBI AGCT 7 cut(s) 73, 131, 156, 508, 538, 551, 596
AluI AGCT 7 cut(s) 73, 131, 156, 508, 538, 551, 596
Alw26I GTCTC 2 cut(s) 178, 639
AlwI GGATC 2 cut(s) 359, 939
AlwNI CAGNNNCTG 1 cut(s) 551
Aor51HI AGCGCT 1 cut(s) 344
AoxI GGCC 3 cut(s) 97, 555, 847
ApeKI GCWGC 7 cut(s) 548, 551, 560, 569, 572, 758, 912
ApoI RAATTY 3 cut(s) 206, 1081, 1090
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
Asp700I GAANNNNTTC 1 cut(s) 888
Asp718I GGTACC 1 cut(s) 676
AspLEI GCGC 2 cut(s) 345, 467
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 2 cut(s) 487, 1033
AsuHPI GGTGA 5 cut(s) 3, 643, 749, 1019, 1099
AvaII GGWCC 1 cut(s) 44
BalI TGGCCA 1 cut(s) 99
BanI GGYRCC 1 cut(s) 676
BanII GRGCYC 1 cut(s) 118
BarI GAAGNNNNNNTAC 2 cut(s) 771, 803
BbsI GAAGAC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 544
BbvI GCAGC 7 cut(s) 538, 547, 556, 559, 560, 745, 924
BccI CCATC 2 cut(s) 162, 989
BceAI ACGGC 3 cut(s) 676, 771, 811
BciT130I CCWGG 2 cut(s) 469, 681
BclI TGATCA 2 cut(s) 739, 979
BcnI CCSGG 2 cut(s) 487, 1033
BcoDI GTCTC 2 cut(s) 178, 639
BfaI CTAG 1 cut(s) 809
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 2 cut(s) 346, 468
BglI GCCNNNNNGGC 1 cut(s) 563
BlpI GCTNAGC 1 cut(s) 346
Bme1390I CCNGG 4 cut(s) 469, 487, 681, 1033
Bme18I GGWCC 1 cut(s) 44
BmeRI GACNNNNNGTC 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 678
BmrFI CCNGG 4 cut(s) 469, 487, 681, 1033
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 39
Bpu10I CCTNAGC 1 cut(s) 544
Bpu1102I GCTNAGC 1 cut(s) 346
BpuEI CTTGAG 2 cut(s) 320, 650
BpuMI CCSGG 2 cut(s) 487, 1033
Bsa29I ATCGAT 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 978
BsaHI GRCGYC 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 3 cut(s) 47, 100, 680
BsaWI WCCGGW 4 cut(s) 367, 510, 722, 734
Bsc4I CCNNNNNNNGG 1 cut(s) 486
Bse1I ACTGG 2 cut(s) 326, 1070
Bse8I GATNNNNATC 1 cut(s) 978
BseBI CCWGG 2 cut(s) 469, 681
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 47, 100, 680
BseGI GGATG 2 cut(s) 584, 1000
BseJI GATNNNNATC 1 cut(s) 978
BseLI CCNNNNNNNGG 1 cut(s) 486
BseMII CTCAG 6 cut(s) 155, 173, 454, 467, 558, 657
BseNI ACTGG 2 cut(s) 326, 1070
BseX3I CGGCCG 1 cut(s) 555
BseXI GCAGC 7 cut(s) 538, 547, 556, 559, 560, 745, 924
BseYI CCCAGC 1 cut(s) 131
Bsh1285I CGRYCG 2 cut(s) 515, 558
BshFI GGCC 3 cut(s) 99, 557, 849
BshNI GGYRCC 1 cut(s) 676
BshVI ATCGAT 1 cut(s) 363
BsiEI CGRYCG 2 cut(s) 515, 558
BsiSI CCGG 6 cut(s) 368, 487, 511, 723, 735, 1032
BslFI GGGAC 1 cut(s) 797
BslI CCNNNNNNNGG 1 cut(s) 486
BsmAI GTCTC 2 cut(s) 178, 639
BsmFI GGGAC 1 cut(s) 797
BsnI GGCC 3 cut(s) 99, 557, 849
Bso31I GGTCTC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 7 cut(s) 364, 739, 748, 898, 931, 973, 979
Bsp1720I GCTNAGC 1 cut(s) 346
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 7 cut(s) 432, 554, 558, 563, 566, 929, 1002
BspANI GGCC 3 cut(s) 99, 557, 849
BspCNI CTCAG 6 cut(s) 156, 174, 453, 466, 557, 658
BspDI ATCGAT 1 cut(s) 363
BspHI TCATGA 4 cut(s) 612, 853, 895, 1105
BspLI GGNNCC 1 cut(s) 678
BspPI GGATC 2 cut(s) 359, 939
BspQI GCTCTTC 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 676
BspTNI GGTCTC 1 cut(s) 178
BsrI ACTGG 2 cut(s) 326, 1070
BssECI CCNNGG 3 cut(s) 47, 100, 680
BssMI GATC 7 cut(s) 364, 739, 748, 898, 931, 973, 979
BssNI GRCGYC 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 100
Bst2UI CCWGG 2 cut(s) 469, 681
Bst4CI ACNGT 4 cut(s) 15, 416, 1022, 1073
Bst6I CTCTTC 2 cut(s) 216, 287
BstACI GRCGYC 1 cut(s) 393
BstDEI CTNAG 8 cut(s) 164, 182, 253, 346, 440, 453, 544, 666
BstDSI CCRYGG 2 cut(s) 47, 100
BstEII GGTNACC 2 cut(s) 9, 370
BstF5I GGATG 2 cut(s) 584, 1000
BstH2I RGCGCY 2 cut(s) 346, 468
BstHHI GCGC 2 cut(s) 345, 467
BstKTI GATC 7 cut(s) 367, 742, 751, 901, 934, 976, 982
BstMAI GTCTC 2 cut(s) 178, 639
BstMBI GATC 7 cut(s) 364, 739, 748, 898, 931, 973, 979
BstMCI CGRYCG 2 cut(s) 515, 558
BstNI CCWGG 2 cut(s) 469, 681
BstPI GGTNACC 2 cut(s) 9, 370
BstSCI CCNGG 4 cut(s) 467, 485, 679, 1031
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 7 cut(s) 538, 547, 556, 559, 560, 745, 924
BstV2I GAAGAC 1 cut(s) 69
BstZI CGGCCG 1 cut(s) 555
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 3 cut(s) 99, 557, 849
BsuTUI ATCGAT 1 cut(s) 363
BtgI CCRYGG 2 cut(s) 47, 100
BtsCI GGATG 2 cut(s) 584, 1000
BtsIMutI CAGTG 1 cut(s) 461
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 4 cut(s) 612, 853, 895, 1105
CciNI GCGGCCGC 1 cut(s) 555
CfoI GCGC 2 cut(s) 345, 467
Cfr13I GGNCC 1 cut(s) 44
ClaI ATCGAT 1 cut(s) 363
CseI GACGC 1 cut(s) 401
Csp6I GTAC 3 cut(s) 677, 788, 794
CviAII CATG 9 cut(s) 95, 101, 245, 448, 613, 854, 867, 896, 1106
CviQI GTAC 3 cut(s) 677, 788, 794
DdeI CTNAG 8 cut(s) 164, 182, 253, 346, 440, 453, 544, 666
DpnI GATC 7 cut(s) 366, 741, 750, 900, 933, 975, 981
DpnII GATC 7 cut(s) 364, 739, 748, 898, 931, 973, 979
DriI GACNNNNNGTC 1 cut(s) 418
EaeI YGGCCR 2 cut(s) 97, 555
EagI CGGCCG 1 cut(s) 555
Eam1104I CTCTTC 2 cut(s) 216, 287
Eam1105I GACNNNNNGTC 1 cut(s) 418
EarI CTCTTC 2 cut(s) 216, 287
EciI GGCGGA 1 cut(s) 944
EclXI CGGCCG 1 cut(s) 555
Eco130I CCWWGG 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 44
Eco47III AGCGCT 1 cut(s) 344
Eco52I CGGCCG 1 cut(s) 555
Eco57I CTGAAG 1 cut(s) 122
Eco91I GGTNACC 2 cut(s) 9, 370
EcoO65I GGTNACC 2 cut(s) 9, 370
EcoRI GAATTC 1 cut(s) 1090
EcoRII CCWGG 2 cut(s) 467, 679
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 9 cut(s) 98, 104, 248, 451, 616, 857, 870, 899, 1109
FalI AAGNNNNNCTT 4 cut(s) 120, 152, 329, 361
FaqI GGGAC 1 cut(s) 797
FatI CATG 9 cut(s) 94, 100, 244, 447, 612, 853, 866, 895, 1105
FbaI TGATCA 2 cut(s) 739, 979
FblI GTMKAC 1 cut(s) 160
FokI GGATG 2 cut(s) 571, 1007
FriOI GRGCYC 1 cut(s) 118
FspBI CTAG 1 cut(s) 809
GlaI GCGC 2 cut(s) 344, 466
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 39
HaeII RGCGCY 2 cut(s) 346, 468
HaeIII GGCC 3 cut(s) 99, 557, 849
HapII CCGG 6 cut(s) 368, 487, 511, 723, 735, 1032
HgaI GACGC 1 cut(s) 401
HhaI GCGC 2 cut(s) 345, 467
Hin1I GRCGYC 1 cut(s) 393
Hin1II CATG 9 cut(s) 98, 104, 248, 451, 616, 857, 870, 899, 1109
Hin6I GCGC 2 cut(s) 343, 465
HinP1I GCGC 2 cut(s) 343, 465
HinfI GANTC 6 cut(s) 52, 360, 500, 632, 1010, 1112
HpaII CCGG 6 cut(s) 368, 487, 511, 723, 735, 1032
HphI GGTGA 5 cut(s) 3, 643, 749, 1019, 1099
Hpy166II GTNNAC 3 cut(s) 51, 161, 945
Hpy188I TCNGA 8 cut(s) 141, 183, 667, 753, 984, 994, 1015, 1080
Hpy8I GTNNAC 3 cut(s) 51, 161, 945
Hpy99I CGWCG 3 cut(s) 395, 416, 697
HpyAV CCTTC 4 cut(s) 610, 773, 860, 932
HpyCH4III ACNGT 4 cut(s) 15, 416, 1022, 1073
HpyCH4IV ACGT 2 cut(s) 786, 822
HpyCH4V TGCA 2 cut(s) 217, 761
HpyF3I CTNAG 8 cut(s) 164, 182, 253, 346, 440, 453, 544, 666
HpySE526I ACGT 2 cut(s) 786, 822
Hsp92I GRCGYC 1 cut(s) 393
Hsp92II CATG 9 cut(s) 98, 104, 248, 451, 616, 857, 870, 899, 1109
HspAI GCGC 2 cut(s) 343, 465
KpnI GGTACC 1 cut(s) 680
Ksp22I TGATCA 2 cut(s) 739, 979
Kzo9I GATC 7 cut(s) 364, 739, 748, 898, 931, 973, 979
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 513
Lsp1109I GCAGC 7 cut(s) 538, 547, 556, 559, 560, 745, 924
MaeI CTAG 1 cut(s) 809
MaeII ACGT 2 cut(s) 786, 822
MaeIII GTNAC 5 cut(s) 9, 20, 370, 862, 1037
MalI GATC 7 cut(s) 366, 741, 750, 900, 933, 975, 981
MboI GATC 7 cut(s) 364, 739, 748, 898, 931, 973, 979
MhlI GDGCHC 1 cut(s) 118
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 7 cut(s) 175, 206, 762, 906, 1060, 1081, 1090
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 2 cut(s) 46, 641
MmeI TCCRAC 3 cut(s) 89, 662, 972
Mox20I TGGCCA 1 cut(s) 99
MroXI GAANNNNTTC 1 cut(s) 888
MscI TGGCCA 1 cut(s) 99
MseI TTAA 3 cut(s) 35, 765, 960
MslI CAYNNNNRTG 2 cut(s) 99, 858
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 3 cut(s) 538, 551, 560
MspI CCGG 6 cut(s) 368, 487, 511, 723, 735, 1032
MspR9I CCNGG 4 cut(s) 469, 487, 681, 1033
MvaI CCWGG 2 cut(s) 469, 681
NciI CCSGG 2 cut(s) 487, 1033
NcoI CCATGG 1 cut(s) 100
NdeII GATC 7 cut(s) 364, 739, 748, 898, 931, 973, 979
NlaIII CATG 9 cut(s) 98, 104, 248, 451, 616, 857, 870, 899, 1109
NlaIV GGNNCC 1 cut(s) 678
NmuCI GTSAC 4 cut(s) 9, 20, 862, 1037
NotI GCGGCCGC 1 cut(s) 555
PagI TCATGA 4 cut(s) 612, 853, 895, 1105
PciSI GCTCTTC 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 4 cut(s) 360, 500, 1010, 1112
PflFI GACNNNGTC 1 cut(s) 26
PleI GAGTC 2 cut(s) 46, 640
PpsI GAGTC 2 cut(s) 46, 640
Psp6I CCWGG 2 cut(s) 467, 679
PspEI GGTNACC 2 cut(s) 9, 370
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 2 cut(s) 467, 679
PspN4I GGNNCC 1 cut(s) 678
PspPI GGNCC 1 cut(s) 44
PstNI CAGNNNCTG 1 cut(s) 551
PsyI GACNNNGTC 1 cut(s) 26
PvuII CAGCTG 2 cut(s) 538, 551
RsaI GTAC 3 cut(s) 678, 789, 795
RsaNI GTAC 3 cut(s) 677, 788, 794
RseI CAYNNNNRTG 2 cut(s) 99, 858
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 3 cut(s) 35, 765, 960
Sau3AI GATC 7 cut(s) 364, 739, 748, 898, 931, 973, 979
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 2 cut(s) 46, 641
ScrFI CCNGG 4 cut(s) 469, 487, 681, 1033
SduI GDGCHC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 2 cut(s) 99, 858
SmlI CTYRAG 2 cut(s) 335, 629
SmoI CTYRAG 2 cut(s) 335, 629
Sse9I AATT 7 cut(s) 175, 206, 762, 906, 1060, 1081, 1090
SsiI CCGC 7 cut(s) 432, 554, 558, 563, 566, 929, 1002
SspMI CTAG 1 cut(s) 809
StyD4I CCNGG 4 cut(s) 467, 485, 679, 1031
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 4 cut(s) 15, 416, 1022, 1073
TaiI ACGT 2 cut(s) 789, 825
TaqI TCGA 2 cut(s) 87, 363
TasI AATT 7 cut(s) 175, 206, 762, 906, 1060, 1081, 1090
TatI WGTACW 1 cut(s) 793
TauI GCSGC 5 cut(s) 434, 557, 560, 566, 569
TfiI GAWTC 4 cut(s) 360, 500, 1010, 1112
Tru1I TTAA 3 cut(s) 35, 765, 960
Tru9I TTAA 3 cut(s) 35, 765, 960
TscAI CASTG 1 cut(s) 461
TseFI GTSAC 4 cut(s) 9, 20, 862, 1037
TseI GCWGC 7 cut(s) 548, 551, 560, 569, 572, 758, 912
Tsp45I GTSAC 4 cut(s) 9, 20, 862, 1037
TspDTI ATGAA 7 cut(s) 573, 601, 629, 842, 881, 897, 1062
TspGWI ACGGA 2 cut(s) 36, 958
TspRI CASTG 1 cut(s) 461
Tth111I GACNNNGTC 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 3 cut(s) 206, 1081, 1090
XmiI GTMKAC 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 1 cut(s) 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.