Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Reverse (-)

64489359 .. 64490454

Gene Structure 1096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG395200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGCATCGACCCCGTGACCCACAAGCCCAAGCACCACGAAGCCTACGGGTCTGGCAGCGGCCACGCCAAGGATGCTGCCAACCTGAGCCACATGGCTCAGTGGGAGAGTGCCCGGCTTGAGGCCGAGGCCAGGCTGGTCAGAGAATCCAAGCAGCTCATCATGACCAATCACCCTCTCCAATTCCAGCACCACCAGCTCGTCAACATCAGCCCCTCCACCCAAACTCACGGACTTCTCATGAGCAAAGCCTCCGCCGCCACTTCAGCTCTGCCGTGTCTGGATGTGCTCAAAGCGTGGCAAGGGGCGTGGTCGTCAAAGCCGATAATCCGAGACAACAACAGTAGTAATAACACGATTGTTTCGGGTATGAATTTGATGATGGCCATGGACGACCTCGAGTCTCCAACGTCCACGTTGAACTTCCCGGCAGCGTACAACAACGCAGCATATCCAATGCAATCTCTTAACGCCAATAAGCAACTACCTCAGTTCAAACAAGAGGTGGCCAACACGATGGTGCAGCAAGACATTCATGCATACAATGGTTGTACGGATGCAAGTACAACTACTACCAATGCGTGGTTCGCTGAGGACGTTATGATTAGGTCAAGTGGCGGAAACGATGACGTGAACAACGTCATGCTGCCGGCTGCTGCTGCTGCTCTTTCGAATATCATGGAGGGTTTCTGTGGCGGCACCACCGCGGATATGTTGGTCTACAACTCAGATGAGCAGAACATGGCGGCCGGGGAGATCTCCGATACTGCTGGGGATGGAAGCTGTGGGCGTAGTGACTACAACGTTGAGGAGAACCGGAGCTACTGGGACAGTATACTCAACTTGGTGAATGCTTCACCATCCGGGTCGCCTGTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

293

Amino Acids

31.57

Weight (kDa)

4.97

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	698
AccB7I	CCANNNNNTGG	1 cut(s)	582
AccI	GTMKAC	2 cut(s)	720, 835
AccII	CGCG	1 cut(s)	707
AciI	CCGC	8 cut(s)	60, 255, 258, 618, 696, 705, 707, 746
AclI	AACGTT	1 cut(s)	804
AcoI	YGGCCR	4 cut(s)	61, 384, 507, 747
AcsI	RAATTY	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	3 cut(s)	437, 553, 565
AfiI	CCNNNNNNNGG	4 cut(s)	70, 121, 132, 582
AgsI	TTSAA	2 cut(s)	421, 496
AhdI	GACNNNNNGTC	1 cut(s)	400
AjiI	CACGTC	1 cut(s)	631
AjnI	CCWGG	1 cut(s)	131
AjuI	GAANNNNNNNTTGG	2 cut(s)	569, 601
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	5 cut(s)	157, 199, 269, 783, 822
AluI	AGCT	5 cut(s)	157, 199, 269, 783, 822
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	2 cut(s)	327, 408
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	6 cut(s)	61, 123, 129, 384, 507, 747
ApoI	RAATTY	1 cut(s)	373
AsuC2I	CCSGG	4 cut(s)	115, 428, 751, 865
AsuHPI	GGTGA	3 cut(s)	164, 849, 859
AsuII	TTCGAA	1 cut(s)	671
AvaI	CYCGRG	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	115
BalI	TGGCCA	2 cut(s)	386, 509
BanI	GGYRCC	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	591
BccI	CCATC	4 cut(s)	376, 511, 770, 868
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	133
BcnI	CCSGG	4 cut(s)	115, 428, 751, 865
BcoDI	GTCTC	2 cut(s)	327, 408
BglII	AGATCT	1 cut(s)	756
Bme1390I	CCNGG	5 cut(s)	115, 133, 428, 751, 865
BmeRI	GACNNNNNGTC	1 cut(s)	400
BmeT110I	CYCGRG	1 cut(s)	398
BmgBI	CACGTC	1 cut(s)	631
BmiI	GGNNCC	1 cut(s)	700
BmrFI	CCNGG	5 cut(s)	115, 133, 428, 751, 865
BmrI	ACTGGG	1 cut(s)	835
BmsI	GCATC	3 cut(s)	15, 64, 547
BmuI	ACTGGG	1 cut(s)	835
Bpu10I	CCTNAGC	2 cut(s)	86, 591
Bpu14I	TTCGAA	1 cut(s)	671
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	4 cut(s)	115, 428, 751, 865
BsaJI	CCNNGG	5 cut(s)	69, 126, 387, 705, 750
BsaWI	WCCGGW	1 cut(s)	816
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 121, 132, 582
Bse118I	RCCGGY	1 cut(s)	649
Bse1I	ACTGG	1 cut(s)	830
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	5 cut(s)	69, 126, 387, 705, 750
BseGI	GGATG	5 cut(s)	79, 289, 562, 781, 860
BseLI	CCNNNNNNNGG	4 cut(s)	70, 121, 132, 582
BseMII	CTCAG	5 cut(s)	77, 113, 503, 582, 741
BseNI	ACTGG	1 cut(s)	830
BseRI	GAGGAG	1 cut(s)	824
BseSI	GKGCMC	1 cut(s)	115
BseX3I	CGGCCG	1 cut(s)	747
BseYI	CCCAGC	1 cut(s)	770
BsgI	GTGCAG	1 cut(s)	542
Bsh1236I	CGCG	1 cut(s)	707
Bsh1285I	CGRYCG	1 cut(s)	750
BshFI	GGCC	6 cut(s)	63, 125, 131, 386, 509, 749
BshNI	GGYRCC	1 cut(s)	698
BsiEI	CGRYCG	1 cut(s)	750
BsiHKAI	GWGCWC	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	6 cut(s)	115, 428, 650, 750, 817, 864
BslFI	GGGAC	1 cut(s)	842
BslI	CCNNNNNNNGG	4 cut(s)	70, 121, 132, 582
BsmAI	GTCTC	2 cut(s)	327, 408
BsmFI	GGGAC	1 cut(s)	842
BsmI	GAATGC	1 cut(s)	856
BsnI	GGCC	6 cut(s)	63, 125, 131, 386, 509, 749
BsoBI	CYCGRG	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	671
Bsp1286I	GDGCHC	2 cut(s)	115, 291
Bsp143I	GATC	1 cut(s)	756
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	8 cut(s)	60, 255, 258, 618, 696, 705, 707, 746
BspANI	GGCC	6 cut(s)	63, 125, 131, 386, 509, 749
BspCNI	CTCAG	5 cut(s)	78, 112, 502, 583, 740
BspFNI	CGCG	1 cut(s)	707
BspHI	TCATGA	2 cut(s)	162, 240
BspLI	GGNNCC	1 cut(s)	700
BspT104I	TTCGAA	1 cut(s)	671
BspT107I	GGYRCC	1 cut(s)	698
BsrFI	RCCGGY	1 cut(s)	649
BsrI	ACTGG	1 cut(s)	830
BssAI	RCCGGY	1 cut(s)	649
BssECI	CCNNGG	5 cut(s)	69, 126, 387, 705, 750
BssMI	GATC	1 cut(s)	756
BssNAI	GTATAC	1 cut(s)	836
BssT1I	CCWWGG	2 cut(s)	69, 387
Bst1107I	GTATAC	1 cut(s)	836
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	2 cut(s)	344, 833
BstBI	TTCGAA	1 cut(s)	671
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	5 cut(s)	86, 99, 489, 591, 727
BstDSI	CCRYGG	2 cut(s)	387, 705
BstF5I	GGATG	5 cut(s)	79, 289, 562, 781, 860
BstFNI	CGCG	1 cut(s)	707
BstKTI	GATC	1 cut(s)	759
BstMAI	GTCTC	2 cut(s)	327, 408
BstMBI	GATC	1 cut(s)	756
BstMCI	CGRYCG	1 cut(s)	750
BstMWI	GCNNNNNNNGC	7 cut(s)	74, 196, 257, 266, 587, 659, 662
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	5 cut(s)	113, 131, 426, 749, 863
BstSLI	GKGCMC	1 cut(s)	115
BstUI	CGCG	1 cut(s)	707
BstX2I	RGATCY	1 cut(s)	756
BstXI	CCANNNNNNTGG	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	756
BstZ17I	GTATAC	1 cut(s)	836
BstZI	CGGCCG	1 cut(s)	747
BsuRI	GGCC	6 cut(s)	63, 125, 131, 386, 509, 749
BtgI	CCRYGG	2 cut(s)	387, 705
BtrI	CACGTC	1 cut(s)	631
BtsCI	GGATG	5 cut(s)	79, 289, 562, 781, 860
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	651
CciI	TCATGA	2 cut(s)	162, 240
Cfr10I	RCCGGY	1 cut(s)	649
Cfr42I	CCGCGG	1 cut(s)	708
Csp6I	GTAC	3 cut(s)	436, 552, 564
CspCI	CAANNNNNGTGG	2 cut(s)	290, 325
CviAII	CATG	8 cut(s)	94, 163, 241, 388, 536, 643, 679, 742
CviQI	GTAC	3 cut(s)	436, 552, 564
DdeI	CTNAG	5 cut(s)	86, 99, 489, 591, 727
DpnI	GATC	1 cut(s)	758
DpnII	GATC	1 cut(s)	756
DriI	GACNNNNNGTC	1 cut(s)	400
EaeI	YGGCCR	4 cut(s)	61, 384, 507, 747
EagI	CGGCCG	1 cut(s)	747
Eam1105I	GACNNNNNGTC	1 cut(s)	400
EciI	GGCGGA	2 cut(s)	244, 633
EclXI	CGGCCG	1 cut(s)	747
Eco130I	CCWWGG	2 cut(s)	69, 387
Eco52I	CGGCCG	1 cut(s)	747
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	2 cut(s)	69, 387
EcoT22I	ATGCAT	1 cut(s)	541
ErhI	CCWWGG	2 cut(s)	69, 387
FaeI	CATG	8 cut(s)	97, 166, 244, 391, 539, 646, 682, 745
FaqI	GGGAC	1 cut(s)	842
FatI	CATG	8 cut(s)	93, 162, 240, 387, 535, 642, 678, 741
FblI	GTMKAC	2 cut(s)	720, 835
FokI	GGATG	5 cut(s)	86, 296, 569, 788, 847
GsaI	CCCAGC	1 cut(s)	774
HaeIII	GGCC	6 cut(s)	63, 125, 131, 386, 509, 749
HapII	CCGG	6 cut(s)	115, 428, 650, 750, 817, 864
Hin1II	CATG	8 cut(s)	97, 166, 244, 391, 539, 646, 682, 745
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	2 cut(s)	146, 401
HpaII	CCGG	6 cut(s)	115, 428, 650, 750, 817, 864
HphI	GGTGA	3 cut(s)	164, 849, 859
Hpy166II	GTNNAC	5 cut(s)	205, 414, 634, 721, 836
Hpy188I	TCNGA	4 cut(s)	143, 332, 730, 763
Hpy188III	TCNNGA	3 cut(s)	163, 241, 281
Hpy8I	GTNNAC	5 cut(s)	205, 414, 634, 721, 836
HpyCH4III	ACNGT	2 cut(s)	344, 833
HpyCH4IV	ACGT	6 cut(s)	410, 416, 597, 630, 639, 804
HpyCH4V	TGCA	4 cut(s)	460, 523, 539, 560
HpyF10VI	GCNNNNNNNGC	7 cut(s)	74, 196, 257, 266, 587, 659, 662
HpyF3I	CTNAG	5 cut(s)	86, 99, 489, 591, 727
HpySE526I	ACGT	6 cut(s)	410, 416, 597, 630, 639, 804
Hsp92II	CATG	8 cut(s)	97, 166, 244, 391, 539, 646, 682, 745
KroI	GCCGGC	1 cut(s)	649
KroNI	GCCGGC	1 cut(s)	651
KspI	CCGCGG	1 cut(s)	708
Kzo9I	GATC	1 cut(s)	756
LmnI	GCTCC	1 cut(s)	819
LweI	GCATC	3 cut(s)	15, 64, 547
MaeII	ACGT	6 cut(s)	410, 416, 597, 630, 639, 804
MaeIII	GTNAC	2 cut(s)	16, 794
MalI	GATC	1 cut(s)	758
MboI	GATC	1 cut(s)	756
MflI	RGATCY	1 cut(s)	756
MhlI	GDGCHC	2 cut(s)	115, 291
MlsI	TGGCCA	2 cut(s)	386, 509
MluCI	AATT	2 cut(s)	182, 373
MluNI	TGGCCA	2 cut(s)	386, 509
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	431
Mox20I	TGGCCA	2 cut(s)	386, 509
Mph1103I	ATGCAT	1 cut(s)	541
MroNI	GCCGGC	1 cut(s)	649
MscI	TGGCCA	2 cut(s)	386, 509
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	518
Msp20I	TGGCCA	2 cut(s)	386, 509
MspA1I	CMGCKG	2 cut(s)	60, 707
MspI	CCGG	6 cut(s)	115, 428, 650, 750, 817, 864
MspR9I	CCNGG	5 cut(s)	115, 133, 428, 751, 865
Mva1269I	GAATGC	1 cut(s)	856
MvaI	CCWGG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	707
MwoI	GCNNNNNNNGC	7 cut(s)	74, 196, 257, 266, 587, 659, 662
NaeI	GCCGGC	1 cut(s)	651
NciI	CCSGG	4 cut(s)	115, 428, 751, 865
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	1 cut(s)	756
NgoMIV	GCCGGC	1 cut(s)	649
NlaIII	CATG	8 cut(s)	97, 166, 244, 391, 539, 646, 682, 745
NlaIV	GGNNCC	1 cut(s)	700
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	2 cut(s)	16, 794
NsiI	ATGCAT	1 cut(s)	541
NspV	TTCGAA	1 cut(s)	671
OliI	CACNNNNGTG	1 cut(s)	518
PaeR7I	CTCGAG	1 cut(s)	398
PagI	TCATGA	2 cut(s)	162, 240
PcsI	WCGNNNNNNNCGW	3 cut(s)	320, 594, 636
PctI	GAATGC	1 cut(s)	856
PdiI	GCCGGC	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	146
PflMI	CCANNNNNTGG	1 cut(s)	582
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
Psp1406I	AACGTT	1 cut(s)	804
Psp6I	CCWGG	1 cut(s)	131
PspFI	CCCAGC	1 cut(s)	770
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	700
PspXI	VCTCGAGB	1 cut(s)	398
PsrI	GAACNNNNNNTAC	2 cut(s)	806, 838
PsuI	RGATCY	1 cut(s)	756
RsaI	GTAC	3 cut(s)	437, 553, 565
RsaNI	GTAC	3 cut(s)	436, 552, 564
RseI	CAYNNNNRTG	1 cut(s)	518
SacII	CCGCGG	1 cut(s)	708
SaqAI	TTAA	1 cut(s)	468
Sau3AI	GATC	1 cut(s)	756
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	5 cut(s)	115, 133, 428, 751, 865
SduI	GDGCHC	2 cut(s)	115, 291
SfaNI	GCATC	3 cut(s)	15, 64, 547
Sfr274I	CTCGAG	1 cut(s)	398
Sfr303I	CCGCGG	1 cut(s)	708
SfuI	TTCGAA	1 cut(s)	671
SgrBI	CCGCGG	1 cut(s)	708
SlaI	CTCGAG	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	518
SmlI	CTYRAG	2 cut(s)	119, 398
SmoI	CTYRAG	2 cut(s)	119, 398
Sse9I	AATT	2 cut(s)	182, 373
SsiI	CCGC	8 cut(s)	60, 255, 258, 618, 696, 705, 707, 746
StyD4I	CCNGG	5 cut(s)	113, 131, 426, 749, 863
StyI	CCWWGG	2 cut(s)	69, 387
TaaI	ACNGT	2 cut(s)	344, 833
TaiI	ACGT	6 cut(s)	413, 419, 600, 633, 642, 807
TaqI	TCGA	3 cut(s)	9, 399, 671
TasI	AATT	2 cut(s)	182, 373
TatI	WGTACW	1 cut(s)	563
TauI	GCSGC	4 cut(s)	63, 260, 699, 749
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	2 cut(s)	16, 794
Tsp45I	GTSAC	2 cut(s)	16, 794
TspDTI	ATGAA	2 cut(s)	386, 524
TspGWI	ACGGA	2 cut(s)	246, 569
TspRI	CASTG	1 cut(s)	107
Van91I	CCANNNNNTGG	1 cut(s)	582
XapI	RAATTY	1 cut(s)	373
XhoI	CTCGAG	1 cut(s)	398
XmiI	GTMKAC	2 cut(s)	720, 835
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.