AT3G01140
MYB Family

myb domain protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
46330 .. 48296
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01140.1

Sequence Viewer

Length: 1167 bp
ATGCCAATCCATGTCAGAGACCGGGAAAAGGGGCGCTTACAGAACCTAAACAGAGACATCTTCTGTTGTGTTTCTCCATCTATATATCAGAGTGACGCCAAGAGAGCAGCTTTTGTGATCATACTGATCATGATCATATCGCCATGTTGTGATAAGGCCGGGTTGAAGAAAGGGCCTTGGACTCCAGAAGAGGATCAGAAACTTTTGGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTTCTTTGCCTGAGAAAGCCGGTCTCCAAAGGTGTGGAAAGAGTTGCAGACTCAGATGGACTAACTACCTAAGACCTGACATCAAGAGAGGCAAATTCACTGTACAAGAAGAACAAACCATCATTCAACTCCACGCTCTCCTCGGAAACAGGTGGTCAGCGATTGCAACTCATTTACCAAAGAGGACAGACAACGAGATCAAGAACTACTGGAACACACACTTGAAGAAACGTCTGATCAAAATGGGGATAGATCCAGTGACTCACAAGCACAAAAACGAGACTCTTTCGTCTTCCACAGGACAATCAAAGAACGCAGCCACGCTTAGTCATATGGCTCAATGGGAGAGTGCAAGACTCGAAGCTGAAGCAAGGCTAGCTAGAGAATCAAAGCTTCTCCATTTACAGCATTACCAAAACAATAACAACCTTAACAAATCAGCAGCTCCTCAACAACATTGCTTCACTCAAAAAACATCAACAAACTGGACTAAACCAAACCAAGGAAACGGAGACCAACAGCTTGAATCTCCGACATCGACGGTGACATTCTCTGAGAATCTTCTGATGCCTTTAGGAATCCCTACGGATAGCAGCAGAAATAGAAACAATAACAACAATGAGTCCTCGGCGATGATTGAATTGGCCGTATCTTCGTCAACCTCCTCCGATGTGAGTCTGGTCAAAGAACATGAACACGACTGGATTAGGCAGATCAACTGTGGTAGTGGAGGAATAGGAGAAGGATTCACGAGTCTATTGATCGGTGATTCGGTCGGCCGGGGTTTACCCACCGGGAAAAACGAAGCGACGGCGGGCGTGGGGAATGAGAGTGAGTATAACTACTATGAGGATAACAAGAATTACTGGAATAGCATTCTCAACTTGGTTGATTCTTCACCGTCCGATTCCGCGACGATGTTCTGA

Protein Analysis

388

Amino Acids

43.56

Weight (kDa)

8.67

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 57 - 104 2.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 60 - 119 1.1e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 110 - 155 2.5e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 113 - 157 6.6e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000583)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 529
AccII CGCG 1 cut(s) 1154
AciI CCGC 2 cut(s) 1055, 1152
AclWI GGATC 2 cut(s) 201, 488
AcoI YGGCCR 3 cut(s) 226, 885, 1018
AcsI RAATTY 1 cut(s) 335
AcuI CTGAAG 1 cut(s) 627
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 345
AfiI CCNNNNNNNGG 2 cut(s) 28, 743
AgsI TTSAA 6 cut(s) 166, 218, 368, 466, 767, 881
AluBI AGCT 7 cut(s) 110, 237, 605, 620, 634, 686, 763
AluI AGCT 7 cut(s) 110, 237, 605, 620, 634, 686, 763
Alw26I GTCTC 5 cut(s) 12, 48, 269, 515, 747
AlwI GGATC 2 cut(s) 201, 488
AoxI GGCC 5 cut(s) 156, 173, 226, 885, 1018
ApeKI GCWGC 4 cut(s) 107, 557, 683, 834
ApoI RAATTY 1 cut(s) 335
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 4 cut(s) 23, 160, 1022, 1036
AsuHPI GGTGA 3 cut(s) 796, 1019, 1131
AsuNHI GCTAGC 1 cut(s) 616
BalI TGGCCA 1 cut(s) 228
BauI CACGAG 1 cut(s) 991
BbsI GAAGAC 1 cut(s) 525
BbvI GCAGC 4 cut(s) 119, 569, 695, 846
BccI CCATC 3 cut(s) 85, 291, 368
BceAI ACGGC 2 cut(s) 872, 1068
BclI TGATCA 4 cut(s) 117, 126, 132, 477
BcnI CCSGG 4 cut(s) 23, 160, 1022, 1036
BcoDI GTCTC 5 cut(s) 12, 48, 269, 515, 747
BfaI CTAG 2 cut(s) 617, 621
BfoI RGCGCY 1 cut(s) 37
BisI GCNGC 4 cut(s) 108, 558, 684, 835
BlsI GCNGC 4 cut(s) 109, 559, 685, 836
Bme1390I CCNGG 4 cut(s) 23, 160, 1022, 1036
BmgT120I GGNCC 1 cut(s) 173
BmrFI CCNGG 4 cut(s) 23, 160, 1022, 1036
BmsI GCATC 1 cut(s) 798
BmtI GCTAGC 1 cut(s) 620
BpiI GAAGAC 1 cut(s) 525
BpmI CTGGAG 1 cut(s) 168
BpuMI CCSGG 4 cut(s) 23, 160, 1022, 1036
BsaBI GATNNNNATC 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 3 cut(s) 12, 269, 747
BsaJI CCNNGG 6 cut(s) 176, 229, 382, 742, 867, 1021
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 743
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 5 cut(s) 455, 497, 731, 947, 1112
Bse3DI GCAATG 1 cut(s) 697
Bse8I GATNNNNATC 1 cut(s) 131
BseDI CCNNGG 6 cut(s) 176, 229, 382, 742, 867, 1021
BseJI GATNNNNATC 1 cut(s) 131
BseLI CCNNNNNNNGG 2 cut(s) 28, 743
BseMI GCAATG 1 cut(s) 697
BseMII CTCAG 3 cut(s) 243, 307, 786
BseNI ACTGG 5 cut(s) 455, 497, 731, 947, 1112
BseRI GAGGAG 3 cut(s) 371, 678, 895
BseX3I CGGCCG 1 cut(s) 1018
BseXI GCAGC 4 cut(s) 119, 569, 695, 846
Bsh1236I CGCG 1 cut(s) 1154
Bsh1285I CGRYCG 2 cut(s) 1017, 1021
BshFI GGCC 5 cut(s) 158, 175, 228, 887, 1020
BsiEI CGRYCG 2 cut(s) 1017, 1021
BsiSI CCGG 5 cut(s) 22, 159, 261, 1021, 1035
BslI CCNNNNNNNGG 2 cut(s) 28, 743
BsmAI GTCTC 5 cut(s) 12, 48, 269, 515, 747
BsmI GAATGC 1 cut(s) 1116
BsnI GGCC 5 cut(s) 158, 175, 228, 887, 1020
Bso31I GGTCTC 3 cut(s) 12, 269, 747
Bsp1407I TGTACA 1 cut(s) 343
Bsp143I GATC 9 cut(s) 117, 126, 132, 193, 438, 477, 493, 954, 1002
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 2 cut(s) 1055, 1152
BspANI GGCC 5 cut(s) 158, 175, 228, 887, 1020
BspCNI CTCAG 3 cut(s) 244, 306, 787
BspFNI CGCG 1 cut(s) 1154
BspHI TCATGA 1 cut(s) 129
BspOI GCTAGC 1 cut(s) 620
BspPI GGATC 2 cut(s) 201, 488
BspTNI GGTCTC 3 cut(s) 12, 269, 747
BsrDI GCAATG 1 cut(s) 697
BsrFI RCCGGY 1 cut(s) 260
BsrGI TGTACA 1 cut(s) 343
BsrI ACTGG 5 cut(s) 455, 497, 731, 947, 1112
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 6 cut(s) 176, 229, 382, 742, 867, 1021
BssMI GATC 9 cut(s) 117, 126, 132, 193, 438, 477, 493, 954, 1002
BssNI GRCGYC 1 cut(s) 96
BssSI CACGAG 1 cut(s) 991
BssT1I CCWWGG 3 cut(s) 176, 229, 742
Bst2BI CACGAG 1 cut(s) 991
Bst4CI ACNGT 4 cut(s) 343, 784, 962, 1143
Bst6I CTCTTC 1 cut(s) 183
BstACI GRCGYC 1 cut(s) 96
BstAUI TGTACA 1 cut(s) 343
BstC8I GCNNGC 3 cut(s) 239, 618, 1057
BstDEI CTNAG 5 cut(s) 252, 293, 311, 566, 795
BstDSI CCRYGG 1 cut(s) 229
BstFNI CGCG 1 cut(s) 1154
BstH2I RGCGCY 1 cut(s) 37
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 9 cut(s) 120, 129, 135, 196, 441, 480, 496, 957, 1005
BstMAI GTCTC 5 cut(s) 12, 48, 269, 515, 747
BstMBI GATC 9 cut(s) 117, 126, 132, 193, 438, 477, 493, 954, 1002
BstMCI CGRYCG 2 cut(s) 1017, 1021
BstMWI GCNNNNNNNGC 4 cut(s) 104, 234, 247, 617
BstSCI CCNGG 4 cut(s) 21, 158, 1020, 1034
BstUI CGCG 1 cut(s) 1154
BstV1I GCAGC 4 cut(s) 119, 569, 695, 846
BstV2I GAAGAC 1 cut(s) 525
BstX2I RGATCY 1 cut(s) 493
BstXI CCANNNNNNTGG 1 cut(s) 275
BstYI RGATCY 1 cut(s) 493
BstZI CGGCCG 1 cut(s) 1018
BsuRI GGCC 5 cut(s) 158, 175, 228, 887, 1020
BtgI CCRYGG 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 887
BtsIMutI CAGTG 2 cut(s) 339, 504
Cac8I GCNNGC 3 cut(s) 239, 618, 1057
CciI TCATGA 1 cut(s) 129
CfoI GCGC 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 173
CseI GACGC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 344
CviAII CATG 6 cut(s) 11, 130, 144, 224, 230, 932
CviQI GTAC 1 cut(s) 344
DdeI CTNAG 5 cut(s) 252, 293, 311, 566, 795
DpnI GATC 9 cut(s) 119, 128, 134, 195, 440, 479, 495, 956, 1004
DpnII GATC 9 cut(s) 117, 126, 132, 193, 438, 477, 493, 954, 1002
DrdI GACNNNNNNGTC 1 cut(s) 529
DseDI GACNNNNNNGTC 1 cut(s) 529
EaeI YGGCCR 3 cut(s) 226, 885, 1018
EagI CGGCCG 1 cut(s) 1018
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EclXI CGGCCG 1 cut(s) 1018
Eco130I CCWWGG 3 cut(s) 176, 229, 742
Eco31I GGTCTC 3 cut(s) 12, 269, 747
Eco52I CGGCCG 1 cut(s) 1018
Eco57I CTGAAG 1 cut(s) 627
EcoO109I RGGNCCY 1 cut(s) 173
EcoT14I CCWWGG 3 cut(s) 176, 229, 742
ErhI CCWWGG 3 cut(s) 176, 229, 742
FaeI CATG 6 cut(s) 14, 133, 147, 227, 233, 935
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FatI CATG 6 cut(s) 10, 129, 143, 223, 229, 931
FauI CCCGC 1 cut(s) 1048
FauNDI CATATG 1 cut(s) 573
FbaI TGATCA 4 cut(s) 117, 126, 132, 477
Fnu4HI GCNGC 4 cut(s) 108, 558, 684, 835
Fsp4HI GCNGC 4 cut(s) 108, 558, 684, 835
FspBI CTAG 2 cut(s) 617, 621
GlaI GCGC 1 cut(s) 35
GluI GCNGC 4 cut(s) 108, 558, 684, 835
GsuI CTGGAG 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 37
HaeIII GGCC 5 cut(s) 158, 175, 228, 887, 1020
HapII CCGG 5 cut(s) 22, 159, 261, 1021, 1035
HgaI GACGC 1 cut(s) 104
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 6 cut(s) 14, 133, 147, 227, 233, 935
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HincII GTYRAC 1 cut(s) 900
HindII GTYRAC 1 cut(s) 900
HindIII AAGCTT 1 cut(s) 632
HpaII CCGG 5 cut(s) 22, 159, 261, 1021, 1035
HphI GGTGA 3 cut(s) 796, 1019, 1131
Hpy166II GTNNAC 2 cut(s) 900, 1028
Hpy188III TCNNGA 5 cut(s) 130, 185, 325, 442, 991
Hpy8I GTNNAC 2 cut(s) 900, 1028
Hpy99I CGWCG 3 cut(s) 784, 1054, 1159
HpyAV CCTTC 1 cut(s) 977
HpyCH4III ACNGT 4 cut(s) 343, 784, 962, 1143
HpyCH4IV ACGT 1 cut(s) 472
HpyCH4V TGCA 3 cut(s) 288, 407, 593
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 234, 247, 617
HpyF3I CTNAG 5 cut(s) 252, 293, 311, 566, 795
HpySE526I ACGT 1 cut(s) 472
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 6 cut(s) 14, 133, 147, 227, 233, 935
HspAI GCGC 1 cut(s) 34
Ksp22I TGATCA 4 cut(s) 117, 126, 132, 477
Kzo9I GATC 9 cut(s) 117, 126, 132, 193, 438, 477, 493, 954, 1002
LmnI GCTCC 1 cut(s) 691
Lsp1109I GCAGC 4 cut(s) 119, 569, 695, 846
LweI GCATC 1 cut(s) 798
MaeI CTAG 2 cut(s) 617, 621
MaeII ACGT 1 cut(s) 472
MaeIII GTNAC 3 cut(s) 92, 499, 784
MalI GATC 9 cut(s) 119, 128, 134, 195, 440, 479, 495, 956, 1004
MboI GATC 9 cut(s) 117, 126, 132, 193, 438, 477, 493, 954, 1002
MflI RGATCY 1 cut(s) 493
MlsI TGGCCA 1 cut(s) 228
MluCI AATT 3 cut(s) 335, 881, 1102
MluNI TGGCCA 1 cut(s) 228
MlyI GAGTC 8 cut(s) 175, 285, 496, 517, 591, 872, 925, 1003
MmeI TCCRAC 1 cut(s) 797
Mox20I TGGCCA 1 cut(s) 228
MscI TGGCCA 1 cut(s) 228
MseI TTAA 1 cut(s) 672
MslI CAYNNNNRTG 1 cut(s) 228
Msp20I TGGCCA 1 cut(s) 228
MspI CCGG 5 cut(s) 22, 159, 261, 1021, 1035
MspR9I CCNGG 4 cut(s) 23, 160, 1022, 1036
Mva1269I GAATGC 1 cut(s) 1116
MvnI CGCG 1 cut(s) 1154
MwoI GCNNNNNNNGC 4 cut(s) 104, 234, 247, 617
NciI CCSGG 4 cut(s) 23, 160, 1022, 1036
NcoI CCATGG 1 cut(s) 229
NdeI CATATG 1 cut(s) 573
NdeII GATC 9 cut(s) 117, 126, 132, 193, 438, 477, 493, 954, 1002
NheI GCTAGC 1 cut(s) 616
NlaIII CATG 6 cut(s) 14, 133, 147, 227, 233, 935
NmeAIII GCCGAG 1 cut(s) 848
NmuCI GTSAC 3 cut(s) 92, 499, 784
PagI TCATGA 1 cut(s) 129
PctI GAATGC 1 cut(s) 1116
PfeI GAWTC 8 cut(s) 626, 767, 799, 819, 987, 1010, 1133, 1148
PkrI GCNGC 4 cut(s) 109, 559, 685, 836
PleI GAGTC 8 cut(s) 175, 285, 496, 517, 591, 871, 924, 1002
PpsI GAGTC 8 cut(s) 175, 285, 496, 517, 591, 871, 924, 1002
PspPI GGNCC 1 cut(s) 173
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 4 cut(s) 108, 558, 684, 835
Sau3AI GATC 9 cut(s) 117, 126, 132, 193, 438, 477, 493, 954, 1002
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 8 cut(s) 175, 285, 496, 517, 591, 872, 925, 1003
ScrFI CCNGG 4 cut(s) 23, 160, 1022, 1036
SfaNI GCATC 1 cut(s) 798
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 3 cut(s) 335, 881, 1102
SsiI CCGC 2 cut(s) 1055, 1152
SspMI CTAG 2 cut(s) 617, 621
StyD4I CCNGG 4 cut(s) 21, 158, 1020, 1034
StyI CCWWGG 3 cut(s) 176, 229, 742
TaaI ACNGT 4 cut(s) 343, 784, 962, 1143
TaiI ACGT 1 cut(s) 475
TaqI TCGA 2 cut(s) 600, 779
TaqII GACCGA 1 cut(s) 1003
TasI AATT 3 cut(s) 335, 881, 1102
TatI WGTACW 1 cut(s) 343
TfiI GAWTC 8 cut(s) 626, 767, 799, 819, 987, 1010, 1133, 1148
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TscAI CASTG 2 cut(s) 346, 504
TseFI GTSAC 3 cut(s) 92, 499, 784
TseI GCWGC 4 cut(s) 107, 557, 683, 834
Tsp45I GTSAC 3 cut(s) 92, 499, 784
TspDTI ATGAA 1 cut(s) 948
TspGWI ACGGA 2 cut(s) 765, 842
TspRI CASTG 2 cut(s) 346, 504
XapI RAATTY 1 cut(s) 335
XspI CTAG 2 cut(s) 617, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.