Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 198 |
| AccII | CGCG | 3 cut(s) | 56, 173, 206 |
| AciI | CCGC | 1 cut(s) | 173 |
| AclWI | GGATC | 4 cut(s) | 132, 145, 176, 189 |
| AcsI | RAATTY | 1 cut(s) | 622 |
| AcyI | GRCGYC | 1 cut(s) | 195 |
| AdeI | CACNNNGTG | 1 cut(s) | 475 |
| AfaI | GTAC | 1 cut(s) | 38 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 172 |
| AgsI | TTSAA | 2 cut(s) | 256, 365 |
| AluBI | AGCT | 5 cut(s) | 306, 384, 418, 425, 502 |
| AluI | AGCT | 5 cut(s) | 306, 384, 418, 425, 502 |
| Alw21I | GWGCWC | 2 cut(s) | 386, 427 |
| Alw26I | GTCTC | 1 cut(s) | 115 |
| AlwI | GGATC | 4 cut(s) | 132, 145, 176, 189 |
| Ama87I | CYCGRG | 1 cut(s) | 438 |
| AoxI | GGCC | 2 cut(s) | 163, 507 |
| ApoI | RAATTY | 1 cut(s) | 622 |
| AspLEI | GCGC | 1 cut(s) | 208 |
| AspS9I | GGNCC | 2 cut(s) | 88, 164 |
| AsuHPI | GGTGA | 1 cut(s) | 560 |
| AvaI | CYCGRG | 1 cut(s) | 438 |
| AvaII | GGWCC | 1 cut(s) | 88 |
| BamHI | GGATCC | 2 cut(s) | 137, 181 |
| BanII | GRGCYC | 2 cut(s) | 386, 427 |
| BauI | CACGAG | 1 cut(s) | 61 |
| Bbv12I | GWGCWC | 2 cut(s) | 386, 427 |
| BccI | CCATC | 2 cut(s) | 79, 347 |
| BceAI | ACGGC | 2 cut(s) | 169, 307 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 382, 416, 508, 542 |
| BclI | TGATCA | 1 cut(s) | 550 |
| BcoDI | GTCTC | 1 cut(s) | 115 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 484 |
| BlpI | GCTNAGC | 1 cut(s) | 302 |
| Bme18I | GGWCC | 1 cut(s) | 88 |
| BmeT110I | CYCGRG | 1 cut(s) | 438 |
| BmgT120I | GGNCC | 2 cut(s) | 88, 164 |
| BmiI | GGNNCC | 3 cut(s) | 139, 166, 183 |
| BmrI | ACTGGG | 1 cut(s) | 109 |
| BmuI | ACTGGG | 1 cut(s) | 109 |
| Bpu10I | CCTNAGC | 1 cut(s) | 530 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 302 |
| BpuEI | CTTGAG | 1 cut(s) | 470 |
| BsaHI | GRCGYC | 1 cut(s) | 195 |
| BsaI | GGTCTC | 1 cut(s) | 115 |
| BsaJI | CCNNGG | 1 cut(s) | 437 |
| BsaWI | WCCGGW | 1 cut(s) | 39 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 172 |
| Bse1I | ACTGG | 1 cut(s) | 104 |
| Bse3DI | GCAATG | 1 cut(s) | 277 |
| BseDI | CCNNGG | 1 cut(s) | 437 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 172 |
| BseMI | GCAATG | 1 cut(s) | 277 |
| BseMII | CTCAG | 3 cut(s) | 494, 544, 560 |
| BseNI | ACTGG | 1 cut(s) | 104 |
| Bsh1236I | CGCG | 3 cut(s) | 56, 173, 206 |
| BshFI | GGCC | 2 cut(s) | 165, 509 |
| BsiHKAI | GWGCWC | 2 cut(s) | 386, 427 |
| BsiHKCI | CYCGRG | 1 cut(s) | 438 |
| BsiSI | CCGG | 1 cut(s) | 40 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 172 |
| BsmAI | GTCTC | 1 cut(s) | 115 |
| BsmI | GAATGC | 1 cut(s) | 340 |
| BsnI | GGCC | 2 cut(s) | 165, 509 |
| Bso31I | GGTCTC | 1 cut(s) | 115 |
| BsoBI | CYCGRG | 1 cut(s) | 438 |
| Bsp1286I | GDGCHC | 2 cut(s) | 386, 427 |
| Bsp143I | GATC | 6 cut(s) | 57, 70, 93, 137, 181, 550 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 302 |
| Bsp68I | TCGCGA | 1 cut(s) | 56 |
| BspACI | CCGC | 1 cut(s) | 173 |
| BspANI | GGCC | 2 cut(s) | 165, 509 |
| BspCNI | CTCAG | 3 cut(s) | 493, 543, 561 |
| BspFNI | CGCG | 3 cut(s) | 56, 173, 206 |
| BspLI | GGNNCC | 3 cut(s) | 139, 166, 183 |
| BspPI | GGATC | 4 cut(s) | 132, 145, 176, 189 |
| BspQI | GCTCTTC | 1 cut(s) | 260 |
| BspTNI | GGTCTC | 1 cut(s) | 115 |
| BsrDI | GCAATG | 1 cut(s) | 277 |
| BsrI | ACTGG | 1 cut(s) | 104 |
| BssECI | CCNNGG | 1 cut(s) | 437 |
| BssMI | GATC | 6 cut(s) | 57, 70, 93, 137, 181, 550 |
| BssNI | GRCGYC | 1 cut(s) | 195 |
| BssSI | CACGAG | 1 cut(s) | 61 |
| Bst2BI | CACGAG | 1 cut(s) | 61 |
| Bst6I | CTCTTC | 1 cut(s) | 260 |
| BstACI | GRCGYC | 1 cut(s) | 195 |
| BstC8I | GCNNGC | 2 cut(s) | 26, 516 |
| BstDEI | CTNAG | 4 cut(s) | 302, 480, 530, 569 |
| BstFNI | CGCG | 3 cut(s) | 56, 173, 206 |
| BstHHI | GCGC | 1 cut(s) | 208 |
| BstKTI | GATC | 6 cut(s) | 60, 73, 96, 140, 184, 553 |
| BstMAI | GTCTC | 1 cut(s) | 115 |
| BstMBI | GATC | 6 cut(s) | 57, 70, 93, 137, 181, 550 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 162, 484, 515 |
| BstUI | CGCG | 3 cut(s) | 56, 173, 206 |
| BstX2I | RGATCY | 2 cut(s) | 137, 181 |
| BstYI | RGATCY | 2 cut(s) | 137, 181 |
| BsuRI | GGCC | 2 cut(s) | 165, 509 |
| BtuMI | TCGCGA | 1 cut(s) | 56 |
| Cac8I | GCNNGC | 2 cut(s) | 26, 516 |
| CfoI | GCGC | 1 cut(s) | 208 |
| Cfr13I | GGNCC | 2 cut(s) | 88, 164 |
| Csp6I | GTAC | 1 cut(s) | 37 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 393, 428 |
| CviAII | CATG | 1 cut(s) | 545 |
| CviQI | GTAC | 1 cut(s) | 37 |
| DdeI | CTNAG | 4 cut(s) | 302, 480, 530, 569 |
| DpnI | GATC | 6 cut(s) | 59, 72, 95, 139, 183, 552 |
| DpnII | GATC | 6 cut(s) | 57, 70, 93, 137, 181, 550 |
| DraI | TTTAAA | 1 cut(s) | 636 |
| DraIII | CACNNNGTG | 1 cut(s) | 475 |
| Eam1104I | CTCTTC | 1 cut(s) | 260 |
| EarI | CTCTTC | 1 cut(s) | 260 |
| Ecl136II | GAGCTC | 2 cut(s) | 384, 425 |
| Eco24I | GRGCYC | 2 cut(s) | 386, 427 |
| Eco31I | GGTCTC | 1 cut(s) | 115 |
| Eco47I | GGWCC | 1 cut(s) | 88 |
| Eco53kI | GAGCTC | 2 cut(s) | 384, 425 |
| Eco88I | CYCGRG | 1 cut(s) | 438 |
| EcoICRI | GAGCTC | 2 cut(s) | 384, 425 |
| EcoT38I | GRGCYC | 2 cut(s) | 386, 427 |
| FaeI | CATG | 1 cut(s) | 548 |
| FaiI | YATR | 3 cut(s) | 192, 539, 546 |
| FatI | CATG | 1 cut(s) | 544 |
| FbaI | TGATCA | 1 cut(s) | 550 |
| FriOI | GRGCYC | 2 cut(s) | 386, 427 |
| GlaI | GCGC | 1 cut(s) | 207 |
| HaeIII | GGCC | 2 cut(s) | 165, 509 |
| HapII | CCGG | 1 cut(s) | 40 |
| HhaI | GCGC | 1 cut(s) | 208 |
| Hin1I | GRCGYC | 1 cut(s) | 195 |
| Hin1II | CATG | 1 cut(s) | 548 |
| Hin6I | GCGC | 1 cut(s) | 206 |
| HinP1I | GCGC | 1 cut(s) | 206 |
| HinfI | GANTC | 7 cut(s) | 31, 79, 121, 148, 218, 358, 523 |
| HpaII | CCGG | 1 cut(s) | 40 |
| HphI | GGTGA | 1 cut(s) | 560 |
| Hpy188I | TCNGA | 4 cut(s) | 75, 84, 483, 565 |
| Hpy188III | TCNNGA | 7 cut(s) | 55, 61, 91, 185, 350, 362, 532 |
| HpyAV | CCTTC | 2 cut(s) | 128, 178 |
| HpyCH4IV | ACGT | 1 cut(s) | 195 |
| HpyCH4V | TGCA | 2 cut(s) | 329, 340 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 162, 484, 515 |
| HpyF3I | CTNAG | 4 cut(s) | 302, 480, 530, 569 |
| HpySE526I | ACGT | 1 cut(s) | 195 |
| Hsp92I | GRCGYC | 1 cut(s) | 195 |
| Hsp92II | CATG | 1 cut(s) | 548 |
| HspAI | GCGC | 1 cut(s) | 206 |
| Ksp22I | TGATCA | 1 cut(s) | 550 |
| Kzo9I | GATC | 6 cut(s) | 57, 70, 93, 137, 181, 550 |
| LguI | GCTCTTC | 1 cut(s) | 260 |
| LmnI | GCTCC | 4 cut(s) | 415, 422, 499, 587 |
| MaeII | ACGT | 1 cut(s) | 195 |
| MaeIII | GTNAC | 1 cut(s) | 388 |
| MalI | GATC | 6 cut(s) | 59, 72, 95, 139, 183, 552 |
| MboI | GATC | 6 cut(s) | 57, 70, 93, 137, 181, 550 |
| MboII | GAAGA | 8 cut(s) | 88, 268, 271, 274, 277, 377, 466, 631 |
| MfeI | CAATTG | 1 cut(s) | 330 |
| MflI | RGATCY | 2 cut(s) | 137, 181 |
| MhlI | GDGCHC | 2 cut(s) | 386, 427 |
| MluCI | AATT | 5 cut(s) | 66, 223, 288, 330, 622 |
| MlyI | GAGTC | 3 cut(s) | 25, 212, 517 |
| MnlI | CCTC | 9 cut(s) | 21, 62, 447, 456, 477, 489, 513, 567, 576 |
| MseI | TTAA | 1 cut(s) | 635 |
| MspI | CCGG | 1 cut(s) | 40 |
| MunI | CAATTG | 1 cut(s) | 330 |
| Mva1269I | GAATGC | 1 cut(s) | 340 |
| MvnI | CGCG | 3 cut(s) | 56, 173, 206 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 162, 484, 515 |
| NdeII | GATC | 6 cut(s) | 57, 70, 93, 137, 181, 550 |
| NlaIII | CATG | 1 cut(s) | 548 |
| NlaIV | GGNNCC | 3 cut(s) | 139, 166, 183 |
| NmuCI | GTSAC | 1 cut(s) | 388 |
| NruI | TCGCGA | 1 cut(s) | 56 |
| PciSI | GCTCTTC | 1 cut(s) | 260 |
| PctI | GAATGC | 1 cut(s) | 340 |
| PfeI | GAWTC | 4 cut(s) | 79, 121, 148, 358 |
| PleI | GAGTC | 3 cut(s) | 25, 212, 517 |
| PpsI | GAGTC | 3 cut(s) | 25, 212, 517 |
| Psp124BI | GAGCTC | 2 cut(s) | 386, 427 |
| PspN4I | GGNNCC | 3 cut(s) | 139, 166, 183 |
| PspPI | GGNCC | 2 cut(s) | 88, 164 |
| PsuI | RGATCY | 2 cut(s) | 137, 181 |
| RruI | TCGCGA | 1 cut(s) | 56 |
| RsaI | GTAC | 1 cut(s) | 38 |
| RsaNI | GTAC | 1 cut(s) | 37 |
| SacI | GAGCTC | 2 cut(s) | 386, 427 |
| SapI | GCTCTTC | 1 cut(s) | 260 |
| SaqAI | TTAA | 1 cut(s) | 635 |
| Sau3AI | GATC | 6 cut(s) | 57, 70, 93, 137, 181, 550 |
| Sau96I | GGNCC | 2 cut(s) | 88, 164 |
| SchI | GAGTC | 3 cut(s) | 25, 212, 517 |
| SduI | GDGCHC | 2 cut(s) | 386, 427 |
| SetI | ASST | 9 cut(s) | 19, 198, 308, 386, 420, 427, 467, 504, 570 |
| SinI | GGWCC | 1 cut(s) | 88 |
| SmlI | CTYRAG | 2 cut(s) | 12, 449 |
| SmoI | CTYRAG | 2 cut(s) | 12, 449 |
| Sse9I | AATT | 5 cut(s) | 66, 223, 288, 330, 622 |
| SsiI | CCGC | 1 cut(s) | 173 |
| SstI | GAGCTC | 2 cut(s) | 386, 427 |
| TaiI | ACGT | 1 cut(s) | 198 |
| TaqI | TCGA | 2 cut(s) | 146, 286 |
| TasI | AATT | 5 cut(s) | 66, 223, 288, 330, 622 |
| TfiI | GAWTC | 4 cut(s) | 79, 121, 148, 358 |
| Tru1I | TTAA | 1 cut(s) | 635 |
| Tru9I | TTAA | 1 cut(s) | 635 |
| TseFI | GTSAC | 1 cut(s) | 388 |
| Tsp45I | GTSAC | 1 cut(s) | 388 |
| TspDTI | ATGAA | 1 cut(s) | 533 |
| TspGWI | ACGGA | 1 cut(s) | 130 |
| VpaK11BI | GGWCC | 1 cut(s) | 88 |
| XapI | RAATTY | 1 cut(s) | 622 |
| ZraI | GACGTC | 1 cut(s) | 196 |