Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Reverse (-)

8321150 .. 8323337

Gene Structure 2188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14661.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAGAAATCCAGAACTTCAACTAACAGCAGCAGTGCTGCAACTTCGAACATAAAAAGAGGGCCATGGACTCCTCAAGAGGACAAGAAGCTCTTTGCCTTCATTCAACAACATGGCCATGGAAGCTGGCGTTCCTTGCCCGAGAAAGCTGGTTTACAAAGATGTGGGAAGAGCTGCAGGTTAAGATGGAAAAACTACCTAAGACCTGATATTAAGAGAGGAAATTTCAGTTTGCAGGAAGACCAGACTATCATTCAGCTTCATGCACTTCTAGGCAACAGGTGGTCAGCAATAGCTGCAAACCTACCAAGGAGAACAGACAATGAGATCAAGAACTACTGGAATACACATTTGAAGAAGAGATTAGACAAGATAGGGTTTGACCCAGTAACCCACAAGCCCAAGACCACCATCCTTGGCTTTGCTAATGGCGACCCGAAGAACCTCTCAAACCTCAGCCACATTGCTCAGTGGGAAAGTGCTAGGCTTCAAGCAGAAGCTAGATTTGTGAGAGAGTCAAAACTACTCAAACCTGCACCACCACCGCCACCAGCACAGTGCCTTGACTTCAATCTAAGAACATGGGAAACCCTAATGATGTCAAAGTCATTAACGGCAGGTTATGGAGGTGGCGGCGAAGCCGGTGGTGTTGGTCGTGCCACTGATGTTGGTTCATTCGTTAACTTTGACGGGGTACCTGGTAATGATGGTAGACTGTTTGATGTTCCACCGTTGACCATGTCAGCAGCTCCGGATTTCAGTGATGTTTCAGAGGAGAGTGGTGTTAGAGAATACGGTGACATATTAGACGCGCTGCTGCAGCAGACTTATAACAACACAGGGTTTGATGTAGCGGATGCTTGGGCTTGGGAACAATGTGATGATATCAGTGCAGACTGTCAAAATGTGATCATGAGCGAGGGGTTGATGACAAACCTATTTATGTTTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

318

Amino Acids

35.33

Weight (kDa)

8.22

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	20 - 67	2.3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	23 - 82	1.1e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	73 - 118	2.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	76 - 127	4e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	831
Acc36I	ACCTGC	3 cut(s)	168, 541, 608
Acc65I	GGTACC	1 cut(s)	694
AccB1I	GGYRCC	1 cut(s)	694
AccI	GTMKAC	1 cut(s)	712
AccII	CGCG	1 cut(s)	812
AccIII	TCCGGA	1 cut(s)	751
AciI	CCGC	3 cut(s)	545, 633, 854
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	223
AfaI	GTAC	1 cut(s)	696
AgsI	TTSAA	5 cut(s)	21, 107, 355, 491, 571
AjnI	CCWGG	1 cut(s)	697
AluBI	AGCT	8 cut(s)	91, 126, 149, 174, 259, 296, 500, 749
AluI	AGCT	8 cut(s)	91, 126, 149, 174, 259, 296, 500, 749
Ama87I	CYCGRG	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	751
AoxI	GGCC	2 cut(s)	62, 115
ApeKI	GCWGC	8 cut(s)	30, 38, 174, 296, 746, 814, 817, 820
ApoI	RAATTY	1 cut(s)	223
Asp718I	GGTACC	1 cut(s)	694
AspLEI	GCGC	1 cut(s)	814
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	809
AsuII	TTCGAA	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	694
BbsI	GAAGAC	1 cut(s)	246
BbvCI	CCTCAGC	1 cut(s)	455
BbvI	GCAGC	8 cut(s)	25, 42, 161, 283, 758, 801, 804, 832
BccI	CCATC	3 cut(s)	180, 419, 701
BceAI	ACGGC	1 cut(s)	630
BciT130I	CCWGG	1 cut(s)	699
BclI	TGATCA	1 cut(s)	909
BfaI	CTAG	3 cut(s)	272, 483, 501
BfmI	CTRYAG	2 cut(s)	175, 818
BfuAI	ACCTGC	3 cut(s)	168, 541, 608
BisI	GCNGC	9 cut(s)	31, 39, 175, 297, 634, 747, 815, 818, 821
BlsI	GCNGC	9 cut(s)	32, 40, 176, 298, 635, 748, 816, 819, 822
Bme1390I	CCNGG	1 cut(s)	699
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	696
BmrFI	CCNGG	1 cut(s)	699
BmrI	ACTGGG	1 cut(s)	380
BmsI	GCATC	1 cut(s)	847
BmuI	ACTGGG	1 cut(s)	380
BpiI	GAAGAC	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	455
Bpu14I	TTCGAA	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	60
BsaJI	CCNNGG	4 cut(s)	65, 118, 308, 415
BsaWI	WCCGGW	1 cut(s)	751
Bse118I	RCCGGY	1 cut(s)	641
Bse1I	ACTGG	2 cut(s)	344, 386
Bse3DI	GCAATG	1 cut(s)	462
BseAI	TCCGGA	1 cut(s)	751
BseBI	CCWGG	1 cut(s)	699
BseDI	CCNNGG	4 cut(s)	65, 118, 308, 415
BseGI	GGATG	2 cut(s)	411, 862
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	2 cut(s)	469, 482
BseNI	ACTGG	2 cut(s)	344, 386
BseRI	GAGGAG	2 cut(s)	63, 788
BseXI	GCAGC	8 cut(s)	25, 42, 161, 283, 758, 801, 804, 832
BsgI	GTGCAG	2 cut(s)	519, 912
Bsh1236I	CGCG	1 cut(s)	812
BshFI	GGCC	2 cut(s)	64, 117
BshNI	GGYRCC	1 cut(s)	694
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	642, 752
BsnI	GGCC	2 cut(s)	64, 117
BsoBI	CYCGRG	1 cut(s)	140
Bsp119I	TTCGAA	1 cut(s)	47
Bsp13I	TCCGGA	1 cut(s)	751
Bsp143I	GATC	2 cut(s)	327, 909
Bsp19I	CCATGG	2 cut(s)	65, 118
BspACI	CCGC	3 cut(s)	545, 633, 854
BspANI	GGCC	2 cut(s)	64, 117
BspCNI	CTCAG	2 cut(s)	468, 481
BspEI	TCCGGA	1 cut(s)	751
BspFNI	CGCG	1 cut(s)	812
BspHI	TCATGA	1 cut(s)	912
BspLI	GGNNCC	1 cut(s)	696
BspMAI	CTGCAG	2 cut(s)	179, 822
BspMI	ACCTGC	3 cut(s)	168, 541, 608
BspQI	GCTCTTC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	694
BsrDI	GCAATG	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	641
BsrI	ACTGG	2 cut(s)	344, 386
BssAI	RCCGGY	1 cut(s)	641
BssECI	CCNNGG	4 cut(s)	65, 118, 308, 415
BssMI	GATC	2 cut(s)	327, 909
BssT1I	CCWWGG	4 cut(s)	65, 118, 308, 415
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	5 cut(s)	558, 717, 732, 797, 899
Bst6I	CTCTTC	2 cut(s)	164, 353
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstBI	TTCGAA	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	4 cut(s)	200, 455, 468, 575
BstDSI	CCRYGG	2 cut(s)	65, 118
BstF5I	GGATG	2 cut(s)	411, 862
BstFNI	CGCG	1 cut(s)	812
BstHHI	GCGC	1 cut(s)	814
BstKTI	GATC	2 cut(s)	330, 912
BstMBI	GATC	2 cut(s)	327, 909
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 136, 296, 820
BstNI	CCWGG	1 cut(s)	699
BstSCI	CCNGG	1 cut(s)	697
BstSFI	CTRYAG	2 cut(s)	175, 818
BstUI	CGCG	1 cut(s)	812
BstV1I	GCAGC	8 cut(s)	25, 42, 161, 283, 758, 801, 804, 832
BstV2I	GAAGAC	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	64, 117
BtgI	CCRYGG	2 cut(s)	65, 118
BtsCI	GGATG	2 cut(s)	411, 862
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	6 cut(s)	40, 476, 563, 660, 766, 895
BveI	ACCTGC	3 cut(s)	168, 541, 608
Cac8I	GCNNGC	1 cut(s)	128
CciI	TCATGA	1 cut(s)	912
CfoI	GCGC	1 cut(s)	814
Cfr10I	RCCGGY	1 cut(s)	641
Cfr13I	GGNCC	1 cut(s)	62
CseI	GACGC	1 cut(s)	818
CsiI	ACCWGGT	1 cut(s)	697
Csp6I	GTAC	1 cut(s)	695
CspCI	CAANNNNNGTGG	4 cut(s)	397, 432, 649, 684
CviAII	CATG	7 cut(s)	66, 113, 119, 263, 582, 739, 913
CviQI	GTAC	1 cut(s)	695
DdeI	CTNAG	4 cut(s)	200, 455, 468, 575
DpnI	GATC	2 cut(s)	329, 911
DpnII	GATC	2 cut(s)	327, 909
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	2 cut(s)	164, 353
EarI	CTCTTC	2 cut(s)	164, 353
Eco130I	CCWWGG	4 cut(s)	65, 118, 308, 415
Eco32I	GATATC	1 cut(s)	886
Eco88I	CYCGRG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	697
EcoRV	GATATC	1 cut(s)	886
EcoT14I	CCWWGG	4 cut(s)	65, 118, 308, 415
ErhI	CCWWGG	4 cut(s)	65, 118, 308, 415
FaeI	CATG	7 cut(s)	69, 116, 122, 266, 585, 742, 916
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FatI	CATG	7 cut(s)	65, 112, 118, 262, 581, 738, 912
FbaI	TGATCA	1 cut(s)	909
FblI	GTMKAC	1 cut(s)	712
Fnu4HI	GCNGC	9 cut(s)	31, 39, 175, 297, 634, 747, 815, 818, 821
FokI	GGATG	2 cut(s)	398, 869
Fsp4HI	GCNGC	9 cut(s)	31, 39, 175, 297, 634, 747, 815, 818, 821
FspBI	CTAG	3 cut(s)	272, 483, 501
GlaI	GCGC	1 cut(s)	813
GluI	GCNGC	9 cut(s)	31, 39, 175, 297, 634, 747, 815, 818, 821
HaeIII	GGCC	2 cut(s)	64, 117
HapII	CCGG	2 cut(s)	642, 752
HgaI	GACGC	1 cut(s)	818
HhaI	GCGC	1 cut(s)	814
Hin1II	CATG	7 cut(s)	69, 116, 122, 266, 585, 742, 916
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HincII	GTYRAC	2 cut(s)	682, 735
HindII	GTYRAC	2 cut(s)	682, 735
HinfI	GANTC	2 cut(s)	70, 515
HpaI	GTTAAC	1 cut(s)	682
HpaII	CCGG	2 cut(s)	642, 752
HphI	GGTGA	1 cut(s)	809
Hpy166II	GTNNAC	4 cut(s)	155, 682, 713, 735
Hpy188I	TCNGA	1 cut(s)	772
Hpy188III	TCNNGA	5 cut(s)	12, 77, 331, 752, 913
Hpy8I	GTNNAC	4 cut(s)	155, 682, 713, 735
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	5 cut(s)	558, 717, 732, 797, 899
HpyCH4V	TGCA	8 cut(s)	41, 177, 235, 266, 299, 536, 820, 893
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 136, 296, 820
HpyF3I	CTNAG	4 cut(s)	200, 455, 468, 575
Hsp92II	CATG	7 cut(s)	69, 116, 122, 266, 585, 742, 916
HspAI	GCGC	1 cut(s)	812
Kpn2I	TCCGGA	1 cut(s)	751
KpnI	GGTACC	1 cut(s)	698
Ksp22I	TGATCA	1 cut(s)	909
KspAI	GTTAAC	1 cut(s)	682
Kzo9I	GATC	2 cut(s)	327, 909
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	1 cut(s)	754
Lsp1109I	GCAGC	8 cut(s)	25, 42, 161, 283, 758, 801, 804, 832
LweI	GCATC	1 cut(s)	847
MabI	ACCWGGT	1 cut(s)	697
MaeI	CTAG	3 cut(s)	272, 483, 501
MaeIII	GTNAC	2 cut(s)	388, 797
MalI	GATC	2 cut(s)	329, 911
MboI	GATC	2 cut(s)	327, 909
MboII	GAAGA	5 cut(s)	181, 251, 367, 370, 451
MlsI	TGGCCA	1 cut(s)	117
MluCI	AATT	1 cut(s)	223
MluNI	TGGCCA	1 cut(s)	117
MlyI	GAGTC	2 cut(s)	64, 524
MnlI	CCTC	9 cut(s)	53, 73, 84, 212, 455, 464, 620, 766, 913
Mox20I	TGGCCA	1 cut(s)	117
MroI	TCCGGA	1 cut(s)	751
MscI	TGGCCA	1 cut(s)	117
MseI	TTAA	4 cut(s)	182, 213, 611, 681
MslI	CAYNNNNRTG	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	117
MspI	CCGG	2 cut(s)	642, 752
MspR9I	CCNGG	1 cut(s)	699
MvaI	CCWGG	1 cut(s)	699
MvnI	CGCG	1 cut(s)	812
MwoI	GCNNNNNNNGC	4 cut(s)	123, 136, 296, 820
NcoI	CCATGG	2 cut(s)	65, 118
NdeII	GATC	2 cut(s)	327, 909
NlaIII	CATG	7 cut(s)	69, 116, 122, 266, 585, 742, 916
NlaIV	GGNNCC	1 cut(s)	696
NmuCI	GTSAC	1 cut(s)	797
NspV	TTCGAA	1 cut(s)	47
PagI	TCATGA	1 cut(s)	912
PciSI	GCTCTTC	1 cut(s)	164
PflFI	GACNNNGTC	1 cut(s)	739
PkrI	GCNGC	9 cut(s)	32, 40, 176, 298, 635, 748, 816, 819, 822
PleI	GAGTC	2 cut(s)	64, 523
PpsI	GAGTC	2 cut(s)	64, 523
PsiI	TTATAA	1 cut(s)	831
Psp6I	CCWGG	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	1 cut(s)	696
PspPI	GGNCC	1 cut(s)	62
PstI	CTGCAG	2 cut(s)	179, 822
PsyI	GACNNNGTC	1 cut(s)	739
RsaI	GTAC	1 cut(s)	696
RsaNI	GTAC	1 cut(s)	695
RseI	CAYNNNNRTG	1 cut(s)	117
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	4 cut(s)	182, 213, 611, 681
SatI	GCNGC	9 cut(s)	31, 39, 175, 297, 634, 747, 815, 818, 821
Sau3AI	GATC	2 cut(s)	327, 909
Sau96I	GGNCC	1 cut(s)	62
SchI	GAGTC	2 cut(s)	64, 524
ScrFI	CCNGG	1 cut(s)	699
SexAI	ACCWGGT	1 cut(s)	697
SfaNI	GCATC	1 cut(s)	847
SfcI	CTRYAG	2 cut(s)	175, 818
SfuI	TTCGAA	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	1 cut(s)	223
SsiI	CCGC	3 cut(s)	545, 633, 854
SspMI	CTAG	3 cut(s)	272, 483, 501
StyD4I	CCNGG	1 cut(s)	697
StyI	CCWWGG	4 cut(s)	65, 118, 308, 415
TaaI	ACNGT	5 cut(s)	558, 717, 732, 797, 899
TaqI	TCGA	1 cut(s)	47
TasI	AATT	1 cut(s)	223
TauI	GCSGC	1 cut(s)	636
Tru1I	TTAA	4 cut(s)	182, 213, 611, 681
Tru9I	TTAA	4 cut(s)	182, 213, 611, 681
TscAI	CASTG	6 cut(s)	40, 476, 563, 667, 766, 895
TseFI	GTSAC	1 cut(s)	797
TseI	GCWGC	8 cut(s)	30, 38, 174, 296, 746, 814, 817, 820
Tsp45I	GTSAC	1 cut(s)	797
TspDTI	ATGAA	3 cut(s)	91, 251, 663
TspRI	CASTG	6 cut(s)	40, 476, 563, 667, 766, 895
Tth111I	GACNNNGTC	1 cut(s)	739
XapI	RAATTY	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	712
XspI	CTAG	3 cut(s)	272, 483, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.