Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Reverse (-)

30215546 .. 30217148

Gene Structure 1603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAAAAGCAATCTCATACTGTTGCATTTCCTGGAATAAGGAGAGGTGCATGGACTCCTGAGGAGGACAAGAAGCTCCTTGCTTTCGTTCAACAACATGGCCATGGAAGCTGGCGTTCCTTCCCCCAGAAAGCTGGTCTCCAAAGATGTGGAAAGAGCTGCAGGCTAAGATGGAGAAACTATCTAAACCCTGATATTAAGAGAGGAAATTTCAGTTTGCAGGAAGACCAGACCATCATTCTACTTCATGCACTTTTGGGCAACAGGTGGTCCGCCATAGCTGCACAGTTACCAAAGAGAACAGACAATGAGATAAAGAACTACTGGAACACACATCTAAAGAAGAGGTTAGCCAAGATAGGGTTTGATCCTGTAACCCACAAGCCCAAGACCGCCATCCTTGCCTCTGCTGAGGGCGGCGACCCGAAGAACCTCTCAAACCTCAGCCACATAGCTCAGTGGGAAACTGCTCGGCTTCAAGCAGAAGCTAGATTCTCCAGACCGTCAAAACTACTCATCAGTCATGACCAACCTCCTAGATTTGGACCCGTGCCTGTACCACAATGCCTTGACATGAACGCAAGAGCACGAGAAATACAGTTACTGTTAAAGTCAATATTAGCTGCAGACAGTGGTGCCCCCACCCACGTTGAGCCTGAGGTTGCTTCATTTGGTACAGTTGATGTTGAGGGCGTGCTTACTAATTGTGATCAGTTTGAGGCTCCAAGAACCAGTACATCAGTTATGGGTTTTGATGAAGTTTTTGGGGAGTCCGGTACTAATAATGACTATGGTGAACTGTTGGAGGCATTACTACAGCACAATCATAACAGTGCTGGATTTGAAGTTGGGGATGCTTGGAGTTTAGAACAACGTGCAACAGTAATGATGAGCGAGCCGGGAACAACGTACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

305

Amino Acids

34.01

Weight (kDa)

7.76

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 78	2.1e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 113	1.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 123	4e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	635
AciI	CCGC	3 cut(s)	273, 393, 417
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	208
AfaI	GTAC	5 cut(s)	558, 676, 736, 778, 911
AfiI	CCNNNNNNNGG	2 cut(s)	360, 542
AgsI	TTSAA	3 cut(s)	92, 479, 845
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	8 cut(s)	76, 111, 134, 159, 281, 455, 488, 623
AluI	AGCT	8 cut(s)	76, 111, 134, 159, 281, 455, 488, 623
Alw21I	GWGCWC	1 cut(s)	589
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	604
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	3 cut(s)	159, 281, 623
ApoI	RAATTY	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	270, 545
AsuC2I	CCSGG	1 cut(s)	900
AsuHPI	GGTGA	1 cut(s)	806
AvaII	GGWCC	2 cut(s)	270, 545
AxyI	CCTNAGG	2 cut(s)	60, 657
BaeGI	GKGCMC	1 cut(s)	640
BalI	TGGCCA	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	635
BauI	CACGAG	1 cut(s)	588
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	589
BbvCI	CCTCAGC	2 cut(s)	411, 443
BbvI	GCAGC	3 cut(s)	146, 268, 610
BccI	CCATC	3 cut(s)	165, 242, 404
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	709
BcnI	CCSGG	1 cut(s)	900
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	2 cut(s)	489, 537
BfmI	CTRYAG	3 cut(s)	160, 624, 815
BisI	GCNGC	4 cut(s)	160, 282, 418, 624
BlsI	GCNGC	4 cut(s)	161, 283, 419, 625
Bme1390I	CCNGG	2 cut(s)	33, 900
Bme18I	GGWCC	2 cut(s)	270, 545
BmgT120I	GGNCC	2 cut(s)	270, 545
BmiI	GGNNCC	3 cut(s)	547, 637, 723
BmrFI	CCNGG	2 cut(s)	33, 900
BmsI	GCATC	1 cut(s)	844
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	481
Bpu10I	CCTNAGC	2 cut(s)	411, 443
BpuMI	CCSGG	1 cut(s)	900
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	773
Bsc4I	CCNNNNNNNGG	2 cut(s)	360, 542
Bse1I	ACTGG	2 cut(s)	329, 732
Bse21I	CCTNAGG	2 cut(s)	60, 657
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	2 cut(s)	396, 859
BseLI	CCNNNNNNNGG	2 cut(s)	360, 542
BseMII	CTCAG	5 cut(s)	51, 402, 457, 470, 648
BseNI	ACTGG	2 cut(s)	329, 732
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	3 cut(s)	146, 268, 610
BsgI	GTGCAG	1 cut(s)	267
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	635
BsiHKAI	GWGCWC	1 cut(s)	589
BsiSI	CCGG	2 cut(s)	774, 899
BslI	CCNNNNNNNGG	2 cut(s)	360, 542
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	589, 640
Bsp143I	GATC	2 cut(s)	367, 709
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	3 cut(s)	273, 393, 417
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	5 cut(s)	52, 403, 456, 469, 649
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	3 cut(s)	547, 637, 723
BspMAI	CTGCAG	2 cut(s)	164, 628
BspPI	GGATC	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	329, 732
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	367, 709
BssSI	CACGAG	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	103
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	338
BstC8I	GCNNGC	4 cut(s)	113, 164, 695, 896
BstDEI	CTNAG	6 cut(s)	60, 167, 411, 443, 456, 657
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	396, 859
BstKTI	GATC	2 cut(s)	370, 712
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	367, 709
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 281, 401
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	31, 898
BstSFI	CTRYAG	3 cut(s)	160, 624, 815
BstSLI	GKGCMC	1 cut(s)	640
BstV1I	GCAGC	3 cut(s)	146, 268, 610
BstV2I	GAAGAC	1 cut(s)	231
BstXI	CCANNNNNNTGG	2 cut(s)	134, 149
Bsu36I	CCTNAGG	2 cut(s)	60, 657
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	396, 859
BtsIMutI	CAGTG	3 cut(s)	464, 637, 838
Cac8I	GCNNGC	4 cut(s)	113, 164, 695, 896
CaiI	CAGNNNCTG	1 cut(s)	604
CciI	TCATGA	1 cut(s)	523
Cfr13I	GGNCC	2 cut(s)	270, 545
Csp6I	GTAC	5 cut(s)	557, 675, 735, 777, 910
CspCI	CAANNNNNGTGG	2 cut(s)	631, 666
CviAII	CATG	6 cut(s)	51, 98, 104, 248, 524, 574
CviQI	GTAC	5 cut(s)	557, 675, 735, 777, 910
DdeI	CTNAG	6 cut(s)	60, 167, 411, 443, 456, 657
DpnI	GATC	2 cut(s)	369, 711
DpnII	GATC	2 cut(s)	367, 709
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EciI	GGCGGA	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	270, 545
Eco81I	CCTNAGG	2 cut(s)	60, 657
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	6 cut(s)	54, 101, 107, 251, 527, 577
FatI	CATG	6 cut(s)	50, 97, 103, 247, 523, 573
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	4 cut(s)	160, 282, 418, 624
FokI	GGATG	2 cut(s)	383, 866
Fsp4HI	GCNGC	4 cut(s)	160, 282, 418, 624
FspBI	CTAG	2 cut(s)	489, 537
GluI	GCNGC	4 cut(s)	160, 282, 418, 624
GsuI	CTGGAG	1 cut(s)	481
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	774, 899
Hin1II	CATG	6 cut(s)	54, 101, 107, 251, 527, 577
HinfI	GANTC	3 cut(s)	55, 492, 770
HpaII	CCGG	2 cut(s)	774, 899
HphI	GGTGA	1 cut(s)	806
Hpy166II	GTNNAC	1 cut(s)	797
Hpy188III	TCNNGA	3 cut(s)	59, 498, 524
Hpy8I	GTNNAC	1 cut(s)	797
HpyAV	CCTTC	1 cut(s)	130
HpyCH4IV	ACGT	3 cut(s)	648, 874, 908
HpyCH4V	TGCA	8 cut(s)	26, 50, 162, 220, 251, 284, 626, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 281, 401
HpyF3I	CTNAG	6 cut(s)	60, 167, 411, 443, 456, 657
HpySE526I	ACGT	3 cut(s)	648, 874, 908
Hsp92II	CATG	6 cut(s)	54, 101, 107, 251, 527, 577
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	2 cut(s)	367, 709
LmnI	GCTCC	2 cut(s)	81, 727
Lsp1109I	GCAGC	3 cut(s)	146, 268, 610
LweI	GCATC	1 cut(s)	844
MaeI	CTAG	2 cut(s)	489, 537
MaeII	ACGT	3 cut(s)	648, 874, 908
MaeIII	GTNAC	3 cut(s)	288, 373, 600
MalI	GATC	2 cut(s)	369, 711
MboI	GATC	2 cut(s)	367, 709
MboII	GAAGA	3 cut(s)	236, 355, 439
MhlI	GDGCHC	2 cut(s)	589, 640
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	2 cut(s)	208, 703
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	2 cut(s)	49, 779
MmeI	TCCRAC	1 cut(s)	783
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	2 cut(s)	198, 608
MslI	CAYNNNNRTG	2 cut(s)	102, 831
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	2 cut(s)	774, 899
MspR9I	CCNGG	2 cut(s)	33, 900
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	108, 281, 401
NciI	CCSGG	1 cut(s)	900
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	367, 709
NlaIII	CATG	6 cut(s)	54, 101, 107, 251, 527, 577
NlaIV	GGNNCC	3 cut(s)	547, 637, 723
NmeAIII	GCCGAG	1 cut(s)	451
PagI	TCATGA	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	492
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	4 cut(s)	161, 283, 419, 625
PleI	GAGTC	2 cut(s)	49, 778
PpsI	GAGTC	2 cut(s)	49, 778
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	3 cut(s)	547, 637, 723
PspPI	GGNCC	2 cut(s)	270, 545
PstI	CTGCAG	2 cut(s)	164, 628
PstNI	CAGNNNCTG	1 cut(s)	604
RsaI	GTAC	5 cut(s)	558, 676, 736, 778, 911
RsaNI	GTAC	5 cut(s)	557, 675, 735, 777, 910
RseI	CAYNNNNRTG	2 cut(s)	102, 831
SaqAI	TTAA	2 cut(s)	198, 608
SatI	GCNGC	4 cut(s)	160, 282, 418, 624
Sau3AI	GATC	2 cut(s)	367, 709
Sau96I	GGNCC	2 cut(s)	270, 545
SchI	GAGTC	2 cut(s)	49, 779
ScrFI	CCNGG	2 cut(s)	33, 900
SduI	GDGCHC	2 cut(s)	589, 640
SfaNI	GCATC	1 cut(s)	844
SfcI	CTRYAG	3 cut(s)	160, 624, 815
SinI	GGWCC	2 cut(s)	270, 545
SmiMI	CAYNNNNRTG	2 cut(s)	102, 831
Sse9I	AATT	2 cut(s)	208, 703
SsiI	CCGC	3 cut(s)	273, 393, 417
SspI	AATATT	1 cut(s)	618
SspMI	CTAG	2 cut(s)	489, 537
StyD4I	CCNGG	2 cut(s)	31, 898
StyI	CCWWGG	1 cut(s)	103
TaiI	ACGT	3 cut(s)	651, 877, 911
TasI	AATT	2 cut(s)	208, 703
TatI	WGTACW	1 cut(s)	734
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	2 cut(s)	198, 608
Tru9I	TTAA	2 cut(s)	198, 608
TscAI	CASTG	3 cut(s)	464, 637, 838
TseI	GCWGC	3 cut(s)	159, 281, 623
TspDTI	ATGAA	4 cut(s)	236, 590, 657, 771
TspRI	CASTG	3 cut(s)	464, 637, 838
VpaK11BI	GGWCC	2 cut(s)	270, 545
XapI	RAATTY	1 cut(s)	208
XspI	CTAG	2 cut(s)	489, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.