Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Forward (+)

21360070 .. 21361615

Gene Structure 1546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAGAAAGTCTGGTTCCTATGCGGCGTCAGGGATAAAGAGAGGTGCATGGACTCCTGAAGAGGACAGAAAGCTTTTAGCTTACATTCAACTACACGGCCATGGAAGCTGGCGTTCCTTGTCCCAGAAAGCTGGTCTAAAAAGATGCGGTAAGAGCTGTAGGCTAAGGTGGATAAACTACCTCAGACCTGATATTAAGAGGGGAAATTTCAGTTTGCACGAAGACCAAACCATCATTCAACTCCATGCACTTCTTGGCAACAGGTGGTCGGCCATAGCTACATACTTACCAAAAAGAACAGACAACGAGATCAAGAATTACTGGAACACACATCTGAAGAAAAGGTTGGCAAAGATAGGGTTGGACCCTGCAACCCATAAGCCCAAGGCTGCCATTCTTGGCTCTGCAAATGGCGACCCCAAAAACTTGTCAAATCTCAGCCACATTGCTCAGTGGGAAAGTGCCAGGATTCAAGCCGAAGCAAGATTTGTCAACGAATCCAAACCACGTATGCATGCATCTGCGCCAGCGGCGTCGCTTTCCGATGAGCACCATCAGTTTGCTCCACCACTAGTTCCACAGTGCCTGGACATTCTACGAGCATCCGCATGGGAAAGCCTAATATCCATGTCAAAGTCATCGTCAAGATCGGCTGCCCTAATCGACGATACAAACGGCCAGGGTAATGTTTCATTCGGTGATCATCATCAGGTTCACGATCATGGTGTTAATATGGACGGCCAAGATTATGGTCCTAATTTTGAGGCTCCAACATATATTCCAACATCTGACCAGCAATTATCAAGCCTGATGGGATATGATGATGCAACGCTCATGTCAGTACCCACTGGATCGATGGATATTTATGAACTTTTCGGTCAGTACTGTGGTGATGAATGCAGTGAATCATTGGCGGCACTCCACCACAATATCGGGTCTGAATTCGAGGATGCTTGGAATAGTTTGGAACAAATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

327

Amino Acids

36.26

Weight (kDa)

6.76

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	23, 147, 530, 606, 914
AclWI	GGATC	1 cut(s)	859
AcoI	YGGCCR	4 cut(s)	97, 270, 676, 739
AcsI	RAATTY	2 cut(s)	205, 941
AcuI	CTGAAG	2 cut(s)	78, 356
AcyI	GRCGYC	2 cut(s)	26, 533
AfaI	GTAC	2 cut(s)	843, 884
AgsI	TTSAA	3 cut(s)	89, 239, 473
AhlI	ACTAGT	1 cut(s)	571
AjnI	CCWGG	3 cut(s)	464, 585, 678
AjuI	GAANNNNNNNTTGG	4 cut(s)	219, 251, 329, 361
AluBI	AGCT	6 cut(s)	73, 80, 108, 131, 156, 278
AluI	AGCT	6 cut(s)	73, 80, 108, 131, 156, 278
Alw21I	GWGCWC	1 cut(s)	552
AlwI	GGATC	1 cut(s)	859
AlwNI	CAGNNNCTG	1 cut(s)	586
AoxI	GGCC	4 cut(s)	97, 270, 676, 739
ApeKI	GCWGC	2 cut(s)	389, 653
ApoI	RAATTY	2 cut(s)	205, 941
ArsI	GACNNNNNNTTYG	2 cut(s)	626, 658
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	2 cut(s)	364, 752
AsuHPI	GGTGA	2 cut(s)	710, 902
AvaII	GGWCC	2 cut(s)	364, 752
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	2 cut(s)	376, 640
BccI	CCATC	4 cut(s)	239, 561, 805, 850
BceAI	ACGGC	3 cut(s)	112, 691, 754
BciT130I	CCWGG	3 cut(s)	466, 587, 680
BclI	TGATCA	1 cut(s)	700
BcuI	ACTAGT	1 cut(s)	571
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	5 cut(s)	24, 390, 531, 654, 915
BlsI	GCNGC	5 cut(s)	25, 391, 532, 655, 916
BmcAI	AGTACT	1 cut(s)	884
Bme1390I	CCNGG	3 cut(s)	466, 587, 680
Bme18I	GGWCC	2 cut(s)	364, 752
BmgT120I	GGNCC	2 cut(s)	364, 752
BmiI	GGNNCC	3 cut(s)	16, 366, 768
BmrFI	CCNGG	3 cut(s)	466, 587, 680
BmsI	GCATC	5 cut(s)	134, 527, 611, 814, 940
BpiI	GAAGAC	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	164
Bsa29I	ATCGAT	1 cut(s)	854
BsaAI	YACGTR	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	2 cut(s)	26, 533
BsaJI	CCNNGG	3 cut(s)	100, 384, 679
Bse1I	ACTGG	2 cut(s)	326, 853
Bse3DI	GCAATG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	3 cut(s)	466, 587, 680
BseCI	ATCGAT	1 cut(s)	854
BseDI	CCNNGG	3 cut(s)	100, 384, 679
BseGI	GGATG	2 cut(s)	602, 955
BseJI	GATNNNNATC	1 cut(s)	705
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	3 cut(s)	196, 451, 464
BseNI	ACTGG	2 cut(s)	326, 853
BseXI	GCAGC	2 cut(s)	376, 640
BshFI	GGCC	4 cut(s)	99, 272, 678, 741
BshVI	ATCGAT	1 cut(s)	854
BsiHKAI	GWGCWC	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	902
BsnI	GGCC	4 cut(s)	99, 272, 678, 741
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp143I	GATC	5 cut(s)	309, 647, 700, 718, 851
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	5 cut(s)	23, 147, 530, 606, 914
BspANI	GGCC	4 cut(s)	99, 272, 678, 741
BspCNI	CTCAG	3 cut(s)	195, 450, 463
BspDI	ATCGAT	1 cut(s)	854
BspLI	GGNNCC	3 cut(s)	16, 366, 768
BspPI	GGATC	1 cut(s)	859
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	2 cut(s)	326, 853
BssECI	CCNNGG	3 cut(s)	100, 384, 679
BssMI	GATC	5 cut(s)	309, 647, 700, 718, 851
BssNI	GRCGYC	2 cut(s)	26, 533
BssT1I	CCWWGG	2 cut(s)	100, 384
Bst2UI	CCWGG	3 cut(s)	466, 587, 680
Bst4CI	ACNGT	2 cut(s)	582, 887
Bst6I	CTCTTC	1 cut(s)	54
BstACI	GRCGYC	2 cut(s)	26, 533
BstBAI	YACGTR	1 cut(s)	509
BstC8I	GCNNGC	3 cut(s)	110, 516, 528
BstDEI	CTNAG	4 cut(s)	164, 182, 437, 450
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	602, 955
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	5 cut(s)	312, 650, 703, 721, 854
BstMBI	GATC	5 cut(s)	309, 647, 700, 718, 851
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 153, 530
BstNI	CCWGG	3 cut(s)	466, 587, 680
BstNSI	RCATGY	1 cut(s)	518
BstSCI	CCNGG	3 cut(s)	464, 585, 678
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	376, 640
BstV2I	GAAGAC	1 cut(s)	228
BstXI	CCANNNNNNTGG	2 cut(s)	131, 749
Bsu15I	ATCGAT	1 cut(s)	854
BsuRI	GGCC	4 cut(s)	99, 272, 678, 741
BsuTUI	ATCGAT	1 cut(s)	854
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	602, 955
BtsI	GCAGTG	1 cut(s)	907
BtsIMutI	CAGTG	4 cut(s)	458, 587, 846, 907
Cac8I	GCNNGC	3 cut(s)	110, 516, 528
CaiI	CAGNNNCTG	1 cut(s)	586
CfoI	GCGC	1 cut(s)	526
Cfr13I	GGNCC	2 cut(s)	364, 752
ClaI	ATCGAT	1 cut(s)	854
CseI	GACGC	2 cut(s)	15, 522
Csp6I	GTAC	2 cut(s)	842, 883
CviAII	CATG	8 cut(s)	48, 101, 245, 515, 609, 628, 722, 835
CviQI	GTAC	2 cut(s)	842, 883
DdeI	CTNAG	4 cut(s)	164, 182, 437, 450
DpnI	GATC	5 cut(s)	311, 649, 702, 720, 853
DpnII	GATC	5 cut(s)	309, 647, 700, 718, 851
EaeI	YGGCCR	4 cut(s)	97, 270, 676, 739
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	2 cut(s)	100, 384
Eco47I	GGWCC	2 cut(s)	364, 752
Eco57I	CTGAAG	2 cut(s)	78, 356
EcoRI	GAATTC	1 cut(s)	941
EcoRII	CCWGG	3 cut(s)	464, 585, 678
EcoT14I	CCWWGG	2 cut(s)	100, 384
EcoT22I	ATGCAT	2 cut(s)	516, 520
ErhI	CCWWGG	2 cut(s)	100, 384
FaeI	CATG	8 cut(s)	51, 104, 248, 518, 612, 631, 725, 838
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	8 cut(s)	47, 100, 244, 514, 608, 627, 721, 834
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	5 cut(s)	24, 390, 531, 654, 915
FokI	GGATG	2 cut(s)	589, 962
Fsp4HI	GCNGC	5 cut(s)	24, 390, 531, 654, 915
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	5 cut(s)	24, 390, 531, 654, 915
HaeIII	GGCC	4 cut(s)	99, 272, 678, 741
HgaI	GACGC	2 cut(s)	15, 522
HhaI	GCGC	1 cut(s)	526
Hin1I	GRCGYC	2 cut(s)	26, 533
Hin1II	CATG	8 cut(s)	51, 104, 248, 518, 612, 631, 725, 838
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	4 cut(s)	52, 469, 497, 905
HphI	GGTGA	2 cut(s)	710, 902
Hpy166II	GTNNAC	2 cut(s)	493, 715
Hpy188I	TCNGA	5 cut(s)	185, 336, 544, 790, 940
Hpy188III	TCNNGA	4 cut(s)	56, 313, 645, 716
Hpy8I	GTNNAC	2 cut(s)	493, 715
Hpy99I	CGWCG	2 cut(s)	538, 668
HpyCH4III	ACNGT	2 cut(s)	582, 887
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	9 cut(s)	47, 217, 248, 371, 407, 514, 518, 827, 900
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 153, 530
HpyF3I	CTNAG	4 cut(s)	164, 182, 437, 450
HpySE526I	ACGT	1 cut(s)	508
Hsp92I	GRCGYC	2 cut(s)	26, 533
Hsp92II	CATG	8 cut(s)	51, 104, 248, 518, 612, 631, 725, 838
HspAI	GCGC	1 cut(s)	524
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	5 cut(s)	309, 647, 700, 718, 851
LmnI	GCTCC	2 cut(s)	568, 772
Lsp1109I	GCAGC	2 cut(s)	376, 640
LweI	GCATC	5 cut(s)	134, 527, 611, 814, 940
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	508
MalI	GATC	5 cut(s)	311, 649, 702, 720, 853
MboI	GATC	5 cut(s)	309, 647, 700, 718, 851
MboII	GAAGA	3 cut(s)	71, 233, 349
MhlI	GDGCHC	1 cut(s)	552
MluCI	AATT	6 cut(s)	205, 316, 757, 797, 941, 972
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	3 cut(s)	342, 794, 806
MnlI	CCTC	6 cut(s)	35, 55, 191, 192, 757, 940
Mph1103I	ATGCAT	2 cut(s)	516, 520
MseI	TTAA	2 cut(s)	195, 729
MslI	CAYNNNNRTG	3 cut(s)	99, 607, 720
MspA1I	CMGCKG	1 cut(s)	530
MspR9I	CCNGG	3 cut(s)	466, 587, 680
Mva1269I	GAATGC	1 cut(s)	902
MvaI	CCWGG	3 cut(s)	466, 587, 680
MwoI	GCNNNNNNNGC	3 cut(s)	105, 153, 530
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	5 cut(s)	309, 647, 700, 718, 851
NlaIII	CATG	8 cut(s)	51, 104, 248, 518, 612, 631, 725, 838
NlaIV	GGNNCC	3 cut(s)	16, 366, 768
NsiI	ATGCAT	2 cut(s)	516, 520
NspI	RCATGY	1 cut(s)	518
PaeI	GCATGC	1 cut(s)	518
PctI	GAATGC	1 cut(s)	902
PfeI	GAWTC	3 cut(s)	469, 497, 905
PkrI	GCNGC	5 cut(s)	25, 391, 532, 655, 916
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Ppu21I	YACGTR	1 cut(s)	509
Psp6I	CCWGG	3 cut(s)	464, 585, 678
PspGI	CCWGG	3 cut(s)	464, 585, 678
PspN4I	GGNNCC	3 cut(s)	16, 366, 768
PspPI	GGNCC	2 cut(s)	364, 752
PstNI	CAGNNNCTG	1 cut(s)	586
RsaI	GTAC	2 cut(s)	843, 884
RsaNI	GTAC	2 cut(s)	842, 883
RseI	CAYNNNNRTG	3 cut(s)	99, 607, 720
SaqAI	TTAA	2 cut(s)	195, 729
SatI	GCNGC	5 cut(s)	24, 390, 531, 654, 915
Sau3AI	GATC	5 cut(s)	309, 647, 700, 718, 851
Sau96I	GGNCC	2 cut(s)	364, 752
ScaI	AGTACT	1 cut(s)	884
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	3 cut(s)	466, 587, 680
SduI	GDGCHC	1 cut(s)	552
SfaNI	GCATC	5 cut(s)	134, 527, 611, 814, 940
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	2 cut(s)	364, 752
SmiMI	CAYNNNNRTG	3 cut(s)	99, 607, 720
SpeI	ACTAGT	1 cut(s)	571
SphI	GCATGC	1 cut(s)	518
Sse9I	AATT	6 cut(s)	205, 316, 757, 797, 941, 972
SsiI	CCGC	5 cut(s)	23, 147, 530, 606, 914
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	3 cut(s)	464, 585, 678
StyI	CCWWGG	2 cut(s)	100, 384
TaaI	ACNGT	2 cut(s)	582, 887
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	3 cut(s)	663, 854, 945
TaqII	GACCGA	1 cut(s)	866
TasI	AATT	6 cut(s)	205, 316, 757, 797, 941, 972
TatI	WGTACW	1 cut(s)	882
TauI	GCSGC	3 cut(s)	26, 533, 917
TfiI	GAWTC	3 cut(s)	469, 497, 905
Tru1I	TTAA	2 cut(s)	195, 729
Tru9I	TTAA	2 cut(s)	195, 729
TscAI	CASTG	4 cut(s)	458, 587, 853, 907
TseI	GCWGC	2 cut(s)	389, 653
TspDTI	ATGAA	3 cut(s)	681, 882, 909
TspRI	CASTG	4 cut(s)	458, 587, 853, 907
VpaK11BI	GGWCC	2 cut(s)	364, 752
XapI	RAATTY	2 cut(s)	205, 941
XceI	RCATGY	1 cut(s)	518
XcmI	CCANNNNNNNNNTGG	2 cut(s)	251, 853
XspI	CTAG	1 cut(s)	572
ZrmI	AGTACT	1 cut(s)	884
Zsp2I	ATGCAT	2 cut(s)	516, 520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.