Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Forward (+)

3127865 .. 3129197

Gene Structure 1333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG046200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGGAAGTCCAGAACGTTAACTAACAGCACTGCTACGACTTCAGAGATAAAAAGAGGGCCATGGACTCCTCAAGAGGACAAGAAGCTCTTTGCTTTCATTCAACAACATGGCCATGGAAGCTGGCGGTCCTTGCCCAAGAAAGCTGGTTTACAAAGATGTGGGAAGAGCTGCAGGCTAAGATGGAGAAACTACCTAAACCCTGCTATTAAGAGAGGAAATTTCAGTTTGCAGGAAGACCAGACCATCATTCAGCTTCATGCACTTCTCGGCAACAGGTGGTCAGCCATAGCTGCGAACTTACCAAGGAGAACAGACAATGAGATAAAGAACTACTGGAACACACATCTAAAGAAGAGGTTAGCCAATGTTAAACGCTTATGCAAGTCAATACGTGTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

134

Amino Acids

15.51

Weight (kDa)

11.2

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	19 - 66	1.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	22 - 81	4.3e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	72 - 117	5.6e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	75 - 122	2.4e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	127
AclI	AACGTT	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	27
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	1 cut(s)	104
AluBI	AGCT	7 cut(s)	88, 123, 146, 171, 256, 293, 402
AluI	AGCT	7 cut(s)	88, 123, 146, 171, 256, 293, 402
AoxI	GGCC	2 cut(s)	59, 112
ApeKI	GCWGC	2 cut(s)	171, 293
ApoI	RAATTY	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	59, 129
AvaII	GGWCC	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	158, 280
BccI	CCATC	2 cut(s)	177, 254
BfmI	CTRYAG	1 cut(s)	172
BisI	GCNGC	2 cut(s)	172, 294
BlsI	GCNGC	2 cut(s)	173, 295
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	59, 129
BpiI	GAAGAC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	395
BsaJI	CCNNGG	3 cut(s)	62, 115, 305
Bse1I	ACTGG	1 cut(s)	341
BseDI	CCNNGG	3 cut(s)	62, 115, 305
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	158, 280
BshFI	GGCC	2 cut(s)	61, 114
BsnI	GGCC	2 cut(s)	61, 114
Bsp19I	CCATGG	2 cut(s)	62, 115
BspACI	CCGC	1 cut(s)	127
BspANI	GGCC	2 cut(s)	61, 114
BspMAI	CTGCAG	1 cut(s)	176
BspQI	GCTCTTC	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	3 cut(s)	62, 115, 305
BssT1I	CCWWGG	3 cut(s)	62, 115, 305
Bst6I	CTCTTC	2 cut(s)	161, 350
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	125, 176
BstDEI	CTNAG	1 cut(s)	179
BstDSI	CCRYGG	2 cut(s)	62, 115
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 133, 293
BstSFI	CTRYAG	1 cut(s)	172
BstV1I	GCAGC	2 cut(s)	158, 280
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	61, 114
BtgI	CCRYGG	2 cut(s)	62, 115
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	125, 176
Cfr13I	GGNCC	2 cut(s)	59, 129
CviAII	CATG	4 cut(s)	63, 110, 116, 260
DdeI	CTNAG	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	161, 350
EarI	CTCTTC	2 cut(s)	161, 350
Eco130I	CCWWGG	3 cut(s)	62, 115, 305
Eco47I	GGWCC	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	27
EcoT14I	CCWWGG	3 cut(s)	62, 115, 305
ErhI	CCWWGG	3 cut(s)	62, 115, 305
FaeI	CATG	4 cut(s)	66, 113, 119, 263
FaiI	YATR	6 cut(s)	64, 111, 117, 261, 290, 382
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	4 cut(s)	62, 109, 115, 259
Fnu4HI	GCNGC	2 cut(s)	172, 294
Fsp4HI	GCNGC	2 cut(s)	172, 294
GluI	GCNGC	2 cut(s)	172, 294
HaeIII	GGCC	2 cut(s)	61, 114
Hin1II	CATG	4 cut(s)	66, 113, 119, 263
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	67
HpaI	GTTAAC	1 cut(s)	21
Hpy166II	GTNNAC	2 cut(s)	21, 152
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	2 cut(s)	12, 74
Hpy8I	GTNNAC	2 cut(s)	21, 152
HpyCH4IV	ACGT	2 cut(s)	17, 394
HpyCH4V	TGCA	4 cut(s)	174, 232, 263, 384
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 133, 293
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	2 cut(s)	17, 394
Hsp92II	CATG	4 cut(s)	66, 113, 119, 263
KspAI	GTTAAC	1 cut(s)	21
LguI	GCTCTTC	1 cut(s)	161
LpnPI	CCDG	9 cut(s)	25, 109, 132, 160, 216, 218, 254, 262, 322
Lsp1109I	GCAGC	2 cut(s)	158, 280
MaeII	ACGT	2 cut(s)	17, 394
MboII	GAAGA	3 cut(s)	178, 248, 367
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	1 cut(s)	220
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	5 cut(s)	50, 70, 81, 209, 351
Mox20I	TGGCCA	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	3 cut(s)	20, 210, 372
MslI	CAYNNNNRTG	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	114
MwoI	GCNNNNNNNGC	3 cut(s)	120, 133, 293
NcoI	CCATGG	2 cut(s)	62, 115
NlaIII	CATG	4 cut(s)	66, 113, 119, 263
NmeAIII	GCCGAG	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	173, 295
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Ppu21I	YACGTR	1 cut(s)	395
Psp1406I	AACGTT	1 cut(s)	17
PspPI	GGNCC	2 cut(s)	59, 129
PstI	CTGCAG	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	20, 210, 372
SatI	GCNGC	2 cut(s)	172, 294
Sau96I	GGNCC	2 cut(s)	59, 129
SchI	GAGTC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	1 cut(s)	127
StyI	CCWWGG	3 cut(s)	62, 115, 305
TaiI	ACGT	2 cut(s)	20, 397
TasI	AATT	1 cut(s)	220
Tru1I	TTAA	3 cut(s)	20, 210, 372
Tru9I	TTAA	3 cut(s)	20, 210, 372
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	2 cut(s)	171, 293
TspDTI	ATGAA	2 cut(s)	88, 248
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.