SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Myb_DNA-binding | PF00249 | 14 - 61 | 6.4e-17 | Myb-like DNA-binding domain |
| Myb_DNA-bind_6 | PF13921 | 17 - 77 | 1.8e-12 | Myb-like DNA-binding domain |
| Myb_DNA-binding | PF00249 | 67 - 112 | 1.3e-17 | Myb-like DNA-binding domain |
| Myb_DNA-bind_6 | PF13921 | 70 - 115 | 2e-08 | Myb-like DNA-binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 664 |
| AatII | GACGTC | 1 cut(s) | 749 |
| Acc16I | TGCGCA | 1 cut(s) | 897 |
| AccI | GTMKAC | 1 cut(s) | 160 |
| AccII | CGCG | 2 cut(s) | 779, 1025 |
| AciI | CCGC | 5 cut(s) | 414, 602, 1062, 1074, 1077 |
| AclI | AACGTT | 1 cut(s) | 684 |
| AclWI | GGATC | 2 cut(s) | 1017, 1156 |
| AcoI | YGGCCR | 1 cut(s) | 97 |
| AcyI | GRCGYC | 2 cut(s) | 746, 1056 |
| AfaI | GTAC | 2 cut(s) | 585, 767 |
| AflIII | ACRYGT | 3 cut(s) | 586, 777, 1023 |
| AgsI | TTSAA | 5 cut(s) | 37, 737, 757, 960, 1091 |
| AjiI | CACGTC | 1 cut(s) | 589 |
| AjnI | CCWGG | 1 cut(s) | 467 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 492, 497, 524, 529, 940, 972 |
| AluBI | AGCT | 8 cut(s) | 73, 108, 116, 156, 241, 272, 508, 558 |
| AluI | AGCT | 8 cut(s) | 73, 108, 116, 156, 241, 272, 508, 558 |
| Alw26I | GTCTC | 6 cut(s) | 15, 337, 404, 420, 672, 1032 |
| AlwI | GGATC | 2 cut(s) | 1017, 1156 |
| AoxI | GGCC | 5 cut(s) | 97, 185, 415, 483, 597 |
| ApeKI | GCWGC | 4 cut(s) | 18, 411, 555, 884 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1041, 1073 |
| AspLEI | GCGC | 3 cut(s) | 467, 610, 898 |
| AspS9I | GGNCC | 3 cut(s) | 44, 186, 598 |
| AsuC2I | CCSGG | 1 cut(s) | 832 |
| AsuHPI | GGTGA | 4 cut(s) | 508, 566, 1091, 1131 |
| AvaII | GGWCC | 1 cut(s) | 44 |
| AxyI | CCTNAGG | 1 cut(s) | 182 |
| BalI | TGGCCA | 1 cut(s) | 99 |
| BanII | GRGCYC | 1 cut(s) | 138 |
| BauI | CACGAG | 1 cut(s) | 392 |
| BbsI | GAAGAC | 1 cut(s) | 69 |
| BbvI | GCAGC | 4 cut(s) | 5, 423, 567, 871 |
| BccI | CCATC | 2 cut(s) | 239, 349 |
| BceAI | ACGGC | 1 cut(s) | 707 |
| BciT130I | CCWGG | 1 cut(s) | 469 |
| BclI | TGATCA | 2 cut(s) | 549, 966 |
| BcnI | CCSGG | 1 cut(s) | 832 |
| BcoDI | GTCTC | 6 cut(s) | 15, 337, 404, 420, 672, 1032 |
| BfaI | CTAG | 1 cut(s) | 879 |
| BfmI | CTRYAG | 1 cut(s) | 273 |
| BfoI | RGCGCY | 2 cut(s) | 468, 611 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 605, 952 |
| BisI | GCNGC | 7 cut(s) | 19, 412, 415, 556, 885, 1063, 1075 |
| BlsI | GCNGC | 7 cut(s) | 20, 413, 416, 557, 886, 1064, 1076 |
| Bme1390I | CCNGG | 2 cut(s) | 469, 832 |
| Bme18I | GGWCC | 1 cut(s) | 44 |
| BmgBI | CACGTC | 1 cut(s) | 589 |
| BmgT120I | GGNCC | 3 cut(s) | 44, 186, 598 |
| BmiI | GGNNCC | 3 cut(s) | 45, 137, 600 |
| BmrFI | CCNGG | 2 cut(s) | 469, 832 |
| BmrI | ACTGGG | 2 cut(s) | 500, 960 |
| BmsI | GCATC | 2 cut(s) | 865, 1061 |
| BmuI | ACTGGG | 2 cut(s) | 500, 960 |
| BpiI | GAAGAC | 1 cut(s) | 69 |
| BpmI | CTGGAG | 1 cut(s) | 39 |
| BpuEI | CTTGAG | 1 cut(s) | 320 |
| BpuMI | CCSGG | 1 cut(s) | 832 |
| BsaHI | GRCGYC | 2 cut(s) | 746, 1056 |
| BsaI | GGTCTC | 2 cut(s) | 15, 404 |
| BsaJI | CCNNGG | 4 cut(s) | 47, 100, 480, 723 |
| Bse118I | RCCGGY | 1 cut(s) | 604 |
| Bse1I | ACTGG | 4 cut(s) | 326, 495, 955, 1112 |
| Bse21I | CCTNAGG | 1 cut(s) | 182 |
| Bse3DI | GCAATG | 1 cut(s) | 1072 |
| BseBI | CCWGG | 1 cut(s) | 469 |
| BseDI | CCNNGG | 4 cut(s) | 47, 100, 480, 723 |
| BseGI | GGATG | 4 cut(s) | 628, 880, 991, 1076 |
| BseMI | GCAATG | 1 cut(s) | 1072 |
| BseMII | CTCAG | 4 cut(s) | 155, 173, 467, 1017 |
| BseNI | ACTGG | 4 cut(s) | 326, 495, 955, 1112 |
| BseRI | GAGGAG | 3 cut(s) | 780, 941, 944 |
| BseXI | GCAGC | 4 cut(s) | 5, 423, 567, 871 |
| Bsh1236I | CGCG | 2 cut(s) | 779, 1025 |
| BshFI | GGCC | 5 cut(s) | 99, 187, 417, 485, 599 |
| BsiSI | CCGG | 2 cut(s) | 605, 831 |
| BsiWI | CGTACG | 1 cut(s) | 765 |
| BslFI | GGGAC | 1 cut(s) | 57 |
| BsmAI | GTCTC | 6 cut(s) | 15, 337, 404, 420, 672, 1032 |
| BsmBI | CGTCTC | 1 cut(s) | 1032 |
| BsmFI | GGGAC | 1 cut(s) | 57 |
| BsnI | GGCC | 5 cut(s) | 99, 187, 417, 485, 599 |
| Bso31I | GGTCTC | 2 cut(s) | 15, 404 |
| Bsp1286I | GDGCHC | 1 cut(s) | 138 |
| Bsp143I | GATC | 5 cut(s) | 309, 549, 966, 1009, 1148 |
| Bsp19I | CCATGG | 1 cut(s) | 100 |
| BspACI | CCGC | 5 cut(s) | 414, 602, 1062, 1074, 1077 |
| BspANI | GGCC | 5 cut(s) | 99, 187, 417, 485, 599 |
| BspCNI | CTCAG | 4 cut(s) | 156, 174, 466, 1016 |
| BspFNI | CGCG | 2 cut(s) | 779, 1025 |
| BspHI | TCATGA | 1 cut(s) | 546 |
| BspLI | GGNNCC | 3 cut(s) | 45, 137, 600 |
| BspPI | GGATC | 2 cut(s) | 1017, 1156 |
| BspQI | GCTCTTC | 4 cut(s) | 84, 146, 216, 255 |
| BspTNI | GGTCTC | 2 cut(s) | 15, 404 |
| BsrDI | GCAATG | 1 cut(s) | 1072 |
| BsrFI | RCCGGY | 1 cut(s) | 604 |
| BsrI | ACTGG | 4 cut(s) | 326, 495, 955, 1112 |
| BssAI | RCCGGY | 1 cut(s) | 604 |
| BssECI | CCNNGG | 4 cut(s) | 47, 100, 480, 723 |
| BssMI | GATC | 5 cut(s) | 309, 549, 966, 1009, 1148 |
| BssNI | GRCGYC | 2 cut(s) | 746, 1056 |
| BssSI | CACGAG | 1 cut(s) | 392 |
| BssT1I | CCWWGG | 1 cut(s) | 100 |
| Bst2BI | CACGAG | 1 cut(s) | 392 |
| Bst2UI | CCWGG | 1 cut(s) | 469 |
| Bst4CI | ACNGT | 4 cut(s) | 48, 692, 1115, 1143 |
| Bst6I | CTCTTC | 7 cut(s) | 84, 146, 216, 255, 287, 335, 1086 |
| BstACI | GRCGYC | 2 cut(s) | 746, 1056 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 893, 1071 |
| BstC8I | GCNNGC | 4 cut(s) | 110, 114, 123, 606 |
| BstDEI | CTNAG | 4 cut(s) | 164, 182, 453, 1003 |
| BstDSI | CCRYGG | 3 cut(s) | 47, 100, 723 |
| BstF5I | GGATG | 4 cut(s) | 628, 880, 991, 1076 |
| BstFNI | CGCG | 2 cut(s) | 779, 1025 |
| BstH2I | RGCGCY | 2 cut(s) | 468, 611 |
| BstHHI | GCGC | 3 cut(s) | 467, 610, 898 |
| BstKTI | GATC | 5 cut(s) | 312, 552, 969, 1012, 1151 |
| BstMAI | GTCTC | 6 cut(s) | 15, 337, 404, 420, 672, 1032 |
| BstMBI | GATC | 5 cut(s) | 309, 549, 966, 1009, 1148 |
| BstNI | CCWGG | 1 cut(s) | 469 |
| BstSCI | CCNGG | 2 cut(s) | 467, 830 |
| BstSFI | CTRYAG | 1 cut(s) | 273 |
| BstUI | CGCG | 2 cut(s) | 779, 1025 |
| BstV1I | GCAGC | 4 cut(s) | 5, 423, 567, 871 |
| BstV2I | GAAGAC | 1 cut(s) | 69 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 146 |
| Bsu36I | CCTNAGG | 1 cut(s) | 182 |
| BsuRI | GGCC | 5 cut(s) | 99, 187, 417, 485, 599 |
| BtgI | CCRYGG | 3 cut(s) | 47, 100, 723 |
| BtrI | CACGTC | 1 cut(s) | 589 |
| BtsCI | GGATG | 4 cut(s) | 628, 880, 991, 1076 |
| BtsIMutI | CAGTG | 1 cut(s) | 461 |
| Cac8I | GCNNGC | 4 cut(s) | 110, 114, 123, 606 |
| CciI | TCATGA | 1 cut(s) | 546 |
| CfoI | GCGC | 3 cut(s) | 467, 610, 898 |
| Cfr10I | RCCGGY | 1 cut(s) | 604 |
| Cfr13I | GGNCC | 3 cut(s) | 44, 186, 598 |
| CseI | GACGC | 2 cut(s) | 1014, 1045 |
| Csp6I | GTAC | 2 cut(s) | 584, 766 |
| CviQI | GTAC | 2 cut(s) | 584, 766 |
| DdeI | CTNAG | 4 cut(s) | 164, 182, 453, 1003 |
| DpnI | GATC | 5 cut(s) | 311, 551, 968, 1011, 1150 |
| DpnII | GATC | 5 cut(s) | 309, 549, 966, 1009, 1148 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 664 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 664 |
| EaeI | YGGCCR | 1 cut(s) | 97 |
| Eam1104I | CTCTTC | 7 cut(s) | 84, 146, 216, 255, 287, 335, 1086 |
| EarI | CTCTTC | 7 cut(s) | 84, 146, 216, 255, 287, 335, 1086 |
| Eco130I | CCWWGG | 1 cut(s) | 100 |
| Eco24I | GRGCYC | 1 cut(s) | 138 |
| Eco31I | GGTCTC | 2 cut(s) | 15, 404 |
| Eco32I | GATATC | 1 cut(s) | 193 |
| Eco47I | GGWCC | 1 cut(s) | 44 |
| Eco81I | CCTNAGG | 1 cut(s) | 182 |
| EcoO109I | RGGNCCY | 1 cut(s) | 598 |
| EcoRII | CCWGG | 1 cut(s) | 467 |
| EcoRV | GATATC | 1 cut(s) | 193 |
| EcoT14I | CCWWGG | 1 cut(s) | 100 |
| EcoT38I | GRGCYC | 1 cut(s) | 138 |
| ErhI | CCWWGG | 1 cut(s) | 100 |
| Esp3I | CGTCTC | 1 cut(s) | 1032 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 497, 529 |
| FaqI | GGGAC | 1 cut(s) | 57 |
| FauI | CCCGC | 1 cut(s) | 609 |
| FbaI | TGATCA | 2 cut(s) | 549, 966 |
| FblI | GTMKAC | 1 cut(s) | 160 |
| Fnu4HI | GCNGC | 7 cut(s) | 19, 412, 415, 556, 885, 1063, 1075 |
| FokI | GGATG | 4 cut(s) | 635, 887, 998, 1083 |
| FriOI | GRGCYC | 1 cut(s) | 138 |
| Fsp4HI | GCNGC | 7 cut(s) | 19, 412, 415, 556, 885, 1063, 1075 |
| FspBI | CTAG | 1 cut(s) | 879 |
| FspI | TGCGCA | 1 cut(s) | 897 |
| GlaI | GCGC | 3 cut(s) | 466, 609, 897 |
| GluI | GCNGC | 7 cut(s) | 19, 412, 415, 556, 885, 1063, 1075 |
| GsuI | CTGGAG | 1 cut(s) | 39 |
| HaeII | RGCGCY | 2 cut(s) | 468, 611 |
| HaeIII | GGCC | 5 cut(s) | 99, 187, 417, 485, 599 |
| HapII | CCGG | 2 cut(s) | 605, 831 |
| HgaI | GACGC | 2 cut(s) | 1014, 1045 |
| HhaI | GCGC | 3 cut(s) | 467, 610, 898 |
| Hin1I | GRCGYC | 2 cut(s) | 746, 1056 |
| Hin6I | GCGC | 3 cut(s) | 465, 608, 896 |
| HinP1I | GCGC | 3 cut(s) | 465, 608, 896 |
| HincII | GTYRAC | 4 cut(s) | 161, 657, 669, 688 |
| HindII | GTYRAC | 4 cut(s) | 161, 657, 669, 688 |
| HindIII | AAGCTT | 1 cut(s) | 506 |
| HinfI | GANTC | 5 cut(s) | 52, 373, 500, 737, 827 |
| HpaI | GTTAAC | 1 cut(s) | 688 |
| HpaII | CCGG | 2 cut(s) | 605, 831 |
| HphI | GGTGA | 4 cut(s) | 508, 566, 1091, 1131 |
| Hpy188I | TCNGA | 4 cut(s) | 257, 744, 1006, 1048 |
| Hpy188III | TCNNGA | 6 cut(s) | 56, 76, 337, 547, 620, 1146 |
| Hpy99I | CGWCG | 2 cut(s) | 748, 1061 |
| HpyCH4III | ACNGT | 4 cut(s) | 48, 692, 1115, 1143 |
| HpyCH4IV | ACGT | 5 cut(s) | 588, 684, 746, 752, 768 |
| HpyCH4V | TGCA | 4 cut(s) | 217, 799, 841, 887 |
| HpyF3I | CTNAG | 4 cut(s) | 164, 182, 453, 1003 |
| HpySE526I | ACGT | 5 cut(s) | 588, 684, 746, 752, 768 |
| Hsp92I | GRCGYC | 2 cut(s) | 746, 1056 |
| HspAI | GCGC | 3 cut(s) | 465, 608, 896 |
| KroI | GCCGGC | 1 cut(s) | 604 |
| KroNI | GCCGGC | 1 cut(s) | 606 |
| Ksp22I | TGATCA | 2 cut(s) | 549, 966 |
| KspAI | GTTAAC | 1 cut(s) | 688 |
| Kzo9I | GATC | 5 cut(s) | 309, 549, 966, 1009, 1148 |
| LguI | GCTCTTC | 4 cut(s) | 84, 146, 216, 255 |
| LmnI | GCTCC | 3 cut(s) | 141, 246, 563 |
| Lsp1109I | GCAGC | 4 cut(s) | 5, 423, 567, 871 |
| LweI | GCATC | 2 cut(s) | 865, 1061 |
| MaeI | CTAG | 1 cut(s) | 879 |
| MaeII | ACGT | 5 cut(s) | 588, 684, 746, 752, 768 |
| MaeIII | GTNAC | 3 cut(s) | 856, 1079, 1103 |
| MalI | GATC | 5 cut(s) | 311, 551, 968, 1011, 1150 |
| MboI | GATC | 5 cut(s) | 309, 549, 966, 1009, 1148 |
| MboII | GAAGA | 9 cut(s) | 71, 74, 101, 163, 233, 242, 304, 352, 1103 |
| MhlI | GDGCHC | 1 cut(s) | 138 |
| MlsI | TGGCCA | 1 cut(s) | 99 |
| MluCI | AATT | 3 cut(s) | 175, 672, 901 |
| MluI | ACGCGT | 2 cut(s) | 777, 1023 |
| MluNI | TGGCCA | 1 cut(s) | 99 |
| MlyI | GAGTC | 3 cut(s) | 46, 367, 836 |
| MmeI | TCCRAC | 2 cut(s) | 559, 767 |
| Mox20I | TGGCCA | 1 cut(s) | 99 |
| MreI | CGCCGGCG | 1 cut(s) | 604 |
| MroNI | GCCGGC | 1 cut(s) | 604 |
| MscI | TGGCCA | 1 cut(s) | 99 |
| MseI | TTAA | 3 cut(s) | 687, 771, 783 |
| MslI | CAYNNNNRTG | 1 cut(s) | 99 |
| Msp20I | TGGCCA | 1 cut(s) | 99 |
| MspA1I | CMGCKG | 1 cut(s) | 414 |
| MspI | CCGG | 2 cut(s) | 605, 831 |
| MspR9I | CCNGG | 2 cut(s) | 469, 832 |
| MvaI | CCWGG | 1 cut(s) | 469 |
| MvnI | CGCG | 2 cut(s) | 779, 1025 |
| NaeI | GCCGGC | 1 cut(s) | 606 |
| NciI | CCSGG | 1 cut(s) | 832 |
| NcoI | CCATGG | 1 cut(s) | 100 |
| NdeII | GATC | 5 cut(s) | 309, 549, 966, 1009, 1148 |
| NgoMIV | GCCGGC | 1 cut(s) | 604 |
| NlaIV | GGNNCC | 3 cut(s) | 45, 137, 600 |
| NmeAIII | GCCGAG | 2 cut(s) | 381, 505 |
| NmuCI | GTSAC | 1 cut(s) | 1079 |
| NsbI | TGCGCA | 1 cut(s) | 897 |
| PagI | TCATGA | 1 cut(s) | 546 |
| PciSI | GCTCTTC | 4 cut(s) | 84, 146, 216, 255 |
| PdiI | GCCGGC | 1 cut(s) | 606 |
| PfeI | GAWTC | 2 cut(s) | 500, 737 |
| Pfl23II | CGTACG | 1 cut(s) | 765 |
| PkrI | GCNGC | 7 cut(s) | 20, 413, 416, 557, 886, 1064, 1076 |
| PleI | GAGTC | 3 cut(s) | 46, 367, 835 |
| PpsI | GAGTC | 3 cut(s) | 46, 367, 835 |
| Psp1406I | AACGTT | 1 cut(s) | 684 |
| Psp6I | CCWGG | 1 cut(s) | 467 |
| PspGI | CCWGG | 1 cut(s) | 467 |
| PspLI | CGTACG | 1 cut(s) | 765 |
| PspN4I | GGNNCC | 3 cut(s) | 45, 137, 600 |
| PspPI | GGNCC | 3 cut(s) | 44, 186, 598 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 749, 781, 1088, 1120 |
| RsaI | GTAC | 2 cut(s) | 585, 767 |
| RsaNI | GTAC | 2 cut(s) | 584, 766 |
| RseI | CAYNNNNRTG | 1 cut(s) | 99 |
| SalI | GTCGAC | 1 cut(s) | 159 |
| SapI | GCTCTTC | 4 cut(s) | 84, 146, 216, 255 |
| SaqAI | TTAA | 3 cut(s) | 687, 771, 783 |
| SatI | GCNGC | 7 cut(s) | 19, 412, 415, 556, 885, 1063, 1075 |
| Sau3AI | GATC | 5 cut(s) | 309, 549, 966, 1009, 1148 |
| Sau96I | GGNCC | 3 cut(s) | 44, 186, 598 |
| SchI | GAGTC | 3 cut(s) | 46, 367, 836 |
| ScrFI | CCNGG | 2 cut(s) | 469, 832 |
| SduI | GDGCHC | 1 cut(s) | 138 |
| SfaNI | GCATC | 2 cut(s) | 865, 1061 |
| SfcI | CTRYAG | 1 cut(s) | 273 |
| SgrAI | CRCCGGYG | 1 cut(s) | 604 |
| SinI | GGWCC | 1 cut(s) | 44 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 99 |
| SmlI | CTYRAG | 1 cut(s) | 335 |
| SmoI | CTYRAG | 1 cut(s) | 335 |
| Sse9I | AATT | 3 cut(s) | 175, 672, 901 |
| SsiI | CCGC | 5 cut(s) | 414, 602, 1062, 1074, 1077 |
| SspI | AATATT | 1 cut(s) | 814 |
| SspMI | CTAG | 1 cut(s) | 879 |
| StyD4I | CCNGG | 2 cut(s) | 467, 830 |
| StyI | CCWWGG | 1 cut(s) | 100 |
| TaaI | ACNGT | 4 cut(s) | 48, 692, 1115, 1143 |
| TaiI | ACGT | 5 cut(s) | 591, 687, 749, 755, 771 |
| TaqI | TCGA | 4 cut(s) | 87, 160, 474, 1122 |
| TasI | AATT | 3 cut(s) | 175, 672, 901 |
| TatI | WGTACW | 1 cut(s) | 583 |
| TauI | GCSGC | 3 cut(s) | 417, 1065, 1077 |
| TfiI | GAWTC | 2 cut(s) | 500, 737 |
| Tru1I | TTAA | 3 cut(s) | 687, 771, 783 |
| Tru9I | TTAA | 3 cut(s) | 687, 771, 783 |
| TscAI | CASTG | 1 cut(s) | 461 |
| TseFI | GTSAC | 1 cut(s) | 1079 |
| TseI | GCWGC | 4 cut(s) | 18, 411, 555, 884 |
| Tsp45I | GTSAC | 1 cut(s) | 1079 |
| TspGWI | ACGGA | 3 cut(s) | 603, 887, 998 |
| TspRI | CASTG | 1 cut(s) | 461 |
| VpaK11BI | GGWCC | 1 cut(s) | 44 |
| XmiI | GTMKAC | 1 cut(s) | 160 |
| XspI | CTAG | 1 cut(s) | 879 |
| ZraI | GACGTC | 1 cut(s) | 747 |