transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 708 |
| AccB1I | GGYRCC | 2 cut(s) | 583, 757 |
| AccI | GTMKAC | 1 cut(s) | 411 |
| AccII | CGCG | 2 cut(s) | 1053, 1062 |
| AciI | CCGC | 4 cut(s) | 147, 1053, 1060, 1062 |
| AcoI | YGGCCR | 3 cut(s) | 97, 270, 650 |
| AcsI | RAATTY | 1 cut(s) | 1159 |
| AcuI | CTGAAG | 2 cut(s) | 122, 852 |
| AfaI | GTAC | 1 cut(s) | 1029 |
| AfeI | AGCGCT | 1 cut(s) | 466 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 255, 486 |
| AflII | CTTAAG | 1 cut(s) | 335 |
| AgsI | TTSAA | 2 cut(s) | 37, 89 |
| AjnI | CCWGG | 1 cut(s) | 897 |
| AluBI | AGCT | 7 cut(s) | 131, 156, 508, 538, 578, 787, 1035 |
| AluI | AGCT | 7 cut(s) | 131, 156, 508, 538, 578, 787, 1035 |
| Alw26I | GTCTC | 3 cut(s) | 690, 806, 1059 |
| Aor51HI | AGCGCT | 1 cut(s) | 466 |
| AoxI | GGCC | 3 cut(s) | 97, 270, 650 |
| ApeKI | GCWGC | 6 cut(s) | 508, 546, 599, 602, 772, 1056 |
| ApoI | RAATTY | 1 cut(s) | 1159 |
| AseI | ATTAAT | 2 cut(s) | 527, 726 |
| AspLEI | GCGC | 3 cut(s) | 454, 467, 1053 |
| AspS9I | GGNCC | 2 cut(s) | 44, 795 |
| AsuC2I | CCSGG | 1 cut(s) | 487 |
| AsuHPI | GGTGA | 4 cut(s) | 3, 839, 932, 1168 |
| AsuNHI | GCTAGC | 1 cut(s) | 346 |
| AvaII | GGWCC | 2 cut(s) | 44, 795 |
| AxyI | CCTNAGG | 1 cut(s) | 799 |
| BaeGI | GKGCMC | 1 cut(s) | 118 |
| BalI | TGGCCA | 2 cut(s) | 99, 652 |
| BanI | GGYRCC | 2 cut(s) | 583, 757 |
| BbsI | GAAGAC | 2 cut(s) | 69, 561 |
| BbvCI | CCTCAGC | 1 cut(s) | 440 |
| BbvI | GCAGC | 6 cut(s) | 495, 558, 586, 589, 784, 1068 |
| BccI | CCATC | 6 cut(s) | 162, 540, 556, 642, 1037, 1177 |
| BciT130I | CCWGG | 1 cut(s) | 899 |
| BclI | TGATCA | 4 cut(s) | 829, 835, 880, 931 |
| BcnI | CCSGG | 1 cut(s) | 487 |
| BcoDI | GTCTC | 3 cut(s) | 690, 806, 1059 |
| BfaI | CTAG | 1 cut(s) | 347 |
| BfmI | CTRYAG | 1 cut(s) | 157 |
| BfoI | RGCGCY | 1 cut(s) | 468 |
| BfrI | CTTAAG | 1 cut(s) | 335 |
| BisI | GCNGC | 8 cut(s) | 509, 547, 600, 603, 773, 1054, 1057, 1060 |
| BlsI | GCNGC | 8 cut(s) | 510, 548, 601, 604, 774, 1055, 1058, 1061 |
| Bme1390I | CCNGG | 2 cut(s) | 487, 899 |
| Bme18I | GGWCC | 2 cut(s) | 44, 795 |
| BmgT120I | GGNCC | 2 cut(s) | 44, 795 |
| BmiI | GGNNCC | 3 cut(s) | 585, 759, 796 |
| BmrFI | CCNGG | 2 cut(s) | 487, 899 |
| BmsI | GCATC | 6 cut(s) | 134, 340, 369, 382, 746, 752 |
| BmtI | GCTAGC | 1 cut(s) | 350 |
| BpiI | GAAGAC | 2 cut(s) | 69, 561 |
| Bpu10I | CCTNAGC | 1 cut(s) | 440 |
| BpuEI | CTTGAG | 1 cut(s) | 701 |
| BpuMI | CCSGG | 1 cut(s) | 487 |
| BsaBI | GATNNNNATC | 2 cut(s) | 834, 936 |
| BsaI | GGTCTC | 1 cut(s) | 806 |
| BsaJI | CCNNGG | 4 cut(s) | 47, 100, 897, 1060 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 404, 434, 942, 972 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 255, 486 |
| Bse1I | ACTGG | 3 cut(s) | 326, 922, 1139 |
| Bse21I | CCTNAGG | 1 cut(s) | 799 |
| Bse3DI | GCAATG | 1 cut(s) | 461 |
| Bse8I | GATNNNNATC | 2 cut(s) | 834, 936 |
| BseBI | CCWGG | 1 cut(s) | 899 |
| BseDI | CCNNGG | 4 cut(s) | 47, 100, 897, 1060 |
| BseGI | GGATG | 2 cut(s) | 622, 653 |
| BseJI | GATNNNNATC | 2 cut(s) | 834, 936 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 255, 486 |
| BseMI | GCAATG | 1 cut(s) | 461 |
| BseMII | CTCAG | 5 cut(s) | 196, 454, 708, 801, 813 |
| BseNI | ACTGG | 3 cut(s) | 326, 922, 1139 |
| BseRI | GAGGAG | 4 cut(s) | 960, 963, 966, 969 |
| BseSI | GKGCMC | 1 cut(s) | 118 |
| BseXI | GCAGC | 6 cut(s) | 495, 558, 586, 589, 784, 1068 |
| BseYI | CCCAGC | 1 cut(s) | 131 |
| Bsh1236I | CGCG | 2 cut(s) | 1053, 1062 |
| BshFI | GGCC | 3 cut(s) | 99, 272, 652 |
| BshNI | GGYRCC | 2 cut(s) | 583, 757 |
| BsiSI | CCGG | 1 cut(s) | 487 |
| BslFI | GGGAC | 1 cut(s) | 880 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 255, 486 |
| BsmAI | GTCTC | 3 cut(s) | 690, 806, 1059 |
| BsmFI | GGGAC | 1 cut(s) | 880 |
| BsmI | GAATGC | 1 cut(s) | 739 |
| BsnI | GGCC | 3 cut(s) | 99, 272, 652 |
| Bso31I | GGTCTC | 1 cut(s) | 806 |
| Bsp1286I | GDGCHC | 1 cut(s) | 118 |
| Bsp143I | GATC | 7 cut(s) | 676, 829, 835, 880, 931, 982, 1000 |
| Bsp19I | CCATGG | 2 cut(s) | 47, 100 |
| BspACI | CCGC | 4 cut(s) | 147, 1053, 1060, 1062 |
| BspANI | GGCC | 3 cut(s) | 99, 272, 652 |
| BspCNI | CTCAG | 5 cut(s) | 195, 453, 709, 802, 812 |
| BspFNI | CGCG | 2 cut(s) | 1053, 1062 |
| BspHI | TCATGA | 3 cut(s) | 832, 877, 928 |
| BspLI | GGNNCC | 3 cut(s) | 585, 759, 796 |
| BspOI | GCTAGC | 1 cut(s) | 350 |
| BspT107I | GGYRCC | 2 cut(s) | 583, 757 |
| BspTI | CTTAAG | 1 cut(s) | 335 |
| BspTNI | GGTCTC | 1 cut(s) | 806 |
| BsrDI | GCAATG | 1 cut(s) | 461 |
| BsrI | ACTGG | 3 cut(s) | 326, 922, 1139 |
| BssECI | CCNNGG | 4 cut(s) | 47, 100, 897, 1060 |
| BssMI | GATC | 7 cut(s) | 676, 829, 835, 880, 931, 982, 1000 |
| BssT1I | CCWWGG | 2 cut(s) | 47, 100 |
| Bst2UI | CCWGG | 1 cut(s) | 899 |
| Bst4CI | ACNGT | 4 cut(s) | 15, 409, 416, 521 |
| Bst6I | CTCTTC | 1 cut(s) | 335 |
| BstAFI | CTTAAG | 1 cut(s) | 335 |
| BstC8I | GCNNGC | 5 cut(s) | 114, 348, 469, 654, 1049 |
| BstDEI | CTNAG | 6 cut(s) | 164, 182, 440, 717, 799, 810 |
| BstDSI | CCRYGG | 3 cut(s) | 47, 100, 1060 |
| BstEII | GGTNACC | 1 cut(s) | 9 |
| BstF5I | GGATG | 2 cut(s) | 622, 653 |
| BstFNI | CGCG | 2 cut(s) | 1053, 1062 |
| BstH2I | RGCGCY | 1 cut(s) | 468 |
| BstHHI | GCGC | 3 cut(s) | 454, 467, 1053 |
| BstKTI | GATC | 7 cut(s) | 679, 832, 838, 883, 934, 985, 1003 |
| BstMAI | GTCTC | 3 cut(s) | 690, 806, 1059 |
| BstMBI | GATC | 7 cut(s) | 676, 829, 835, 880, 931, 982, 1000 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 153, 552, 1053, 1059 |
| BstNI | CCWGG | 1 cut(s) | 899 |
| BstPI | GGTNACC | 1 cut(s) | 9 |
| BstSCI | CCNGG | 2 cut(s) | 485, 897 |
| BstSFI | CTRYAG | 1 cut(s) | 157 |
| BstSLI | GKGCMC | 1 cut(s) | 118 |
| BstUI | CGCG | 2 cut(s) | 1053, 1062 |
| BstV1I | GCAGC | 6 cut(s) | 495, 558, 586, 589, 784, 1068 |
| BstV2I | GAAGAC | 2 cut(s) | 69, 561 |
| Bsu36I | CCTNAGG | 1 cut(s) | 799 |
| BsuRI | GGCC | 3 cut(s) | 99, 272, 652 |
| BtgI | CCRYGG | 3 cut(s) | 47, 100, 1060 |
| BtsCI | GGATG | 2 cut(s) | 622, 653 |
| BtsI | GCAGTG | 1 cut(s) | 1093 |
| BtsIMutI | CAGTG | 3 cut(s) | 405, 996, 1093 |
| Cac8I | GCNNGC | 5 cut(s) | 114, 348, 469, 654, 1049 |
| CciI | TCATGA | 3 cut(s) | 832, 877, 928 |
| CfoI | GCGC | 3 cut(s) | 454, 467, 1053 |
| Cfr13I | GGNCC | 2 cut(s) | 44, 795 |
| Cfr42I | CCGCGG | 1 cut(s) | 1063 |
| CseI | GACGC | 1 cut(s) | 645 |
| Csp6I | GTAC | 1 cut(s) | 1028 |
| CviQI | GTAC | 1 cut(s) | 1028 |
| DdeI | CTNAG | 6 cut(s) | 164, 182, 440, 717, 799, 810 |
| DpnI | GATC | 7 cut(s) | 678, 831, 837, 882, 933, 984, 1002 |
| DpnII | GATC | 7 cut(s) | 676, 829, 835, 880, 931, 982, 1000 |
| DraI | TTTAAA | 1 cut(s) | 625 |
| EaeI | YGGCCR | 3 cut(s) | 97, 270, 650 |
| Eam1104I | CTCTTC | 1 cut(s) | 335 |
| EarI | CTCTTC | 1 cut(s) | 335 |
| Eco130I | CCWWGG | 2 cut(s) | 47, 100 |
| Eco31I | GGTCTC | 1 cut(s) | 806 |
| Eco32I | GATATC | 1 cut(s) | 193 |
| Eco47I | GGWCC | 2 cut(s) | 44, 795 |
| Eco47III | AGCGCT | 1 cut(s) | 466 |
| Eco57I | CTGAAG | 2 cut(s) | 122, 852 |
| Eco81I | CCTNAGG | 1 cut(s) | 799 |
| Eco91I | GGTNACC | 1 cut(s) | 9 |
| EcoO109I | RGGNCCY | 1 cut(s) | 795 |
| EcoO65I | GGTNACC | 1 cut(s) | 9 |
| EcoRI | GAATTC | 1 cut(s) | 1159 |
| EcoRII | CCWGG | 1 cut(s) | 897 |
| EcoRV | GATATC | 1 cut(s) | 193 |
| EcoT14I | CCWWGG | 2 cut(s) | 47, 100 |
| EcoT22I | ATGCAT | 1 cut(s) | 739 |
| ErhI | CCWWGG | 2 cut(s) | 47, 100 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 120, 152, 474, 506 |
| FaqI | GGGAC | 1 cut(s) | 880 |
| FbaI | TGATCA | 4 cut(s) | 829, 835, 880, 931 |
| FblI | GTMKAC | 1 cut(s) | 411 |
| Fnu4HI | GCNGC | 8 cut(s) | 509, 547, 600, 603, 773, 1054, 1057, 1060 |
| FokI | GGATG | 2 cut(s) | 629, 660 |
| Fsp4HI | GCNGC | 8 cut(s) | 509, 547, 600, 603, 773, 1054, 1057, 1060 |
| FspBI | CTAG | 1 cut(s) | 347 |
| GlaI | GCGC | 3 cut(s) | 453, 466, 1052 |
| GluI | GCNGC | 8 cut(s) | 509, 547, 600, 603, 773, 1054, 1057, 1060 |
| GsaI | CCCAGC | 1 cut(s) | 135 |
| HaeII | RGCGCY | 1 cut(s) | 468 |
| HaeIII | GGCC | 3 cut(s) | 99, 272, 652 |
| HapII | CCGG | 1 cut(s) | 487 |
| HgaI | GACGC | 1 cut(s) | 645 |
| HhaI | GCGC | 3 cut(s) | 454, 467, 1053 |
| Hin6I | GCGC | 3 cut(s) | 452, 465, 1051 |
| HinP1I | GCGC | 3 cut(s) | 452, 465, 1051 |
| HincII | GTYRAC | 1 cut(s) | 412 |
| HindII | GTYRAC | 1 cut(s) | 412 |
| HinfI | GANTC | 5 cut(s) | 500, 566, 683, 1067, 1175 |
| HpaII | CCGG | 1 cut(s) | 487 |
| HphI | GGTGA | 4 cut(s) | 3, 839, 932, 1168 |
| Hpy166II | GTNNAC | 3 cut(s) | 412, 973, 996 |
| Hpy188I | TCNGA | 9 cut(s) | 141, 185, 497, 718, 811, 1021, 1042, 1072, 1174 |
| Hpy188III | TCNNGA | 7 cut(s) | 196, 680, 833, 839, 878, 929, 986 |
| Hpy8I | GTNNAC | 3 cut(s) | 412, 973, 996 |
| Hpy99I | CGWCG | 1 cut(s) | 416 |
| HpyAV | CCTTC | 3 cut(s) | 603, 818, 983 |
| HpyCH4III | ACNGT | 4 cut(s) | 15, 409, 416, 521 |
| HpyCH4V | TGCA | 4 cut(s) | 217, 605, 737, 772 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 153, 552, 1053, 1059 |
| HpyF3I | CTNAG | 6 cut(s) | 164, 182, 440, 717, 799, 810 |
| HspAI | GCGC | 3 cut(s) | 452, 465, 1051 |
| Ksp22I | TGATCA | 4 cut(s) | 829, 835, 880, 931 |
| KspI | CCGCGG | 1 cut(s) | 1063 |
| Kzo9I | GATC | 7 cut(s) | 676, 829, 835, 880, 931, 982, 1000 |
| Lsp1109I | GCAGC | 6 cut(s) | 495, 558, 586, 589, 784, 1068 |
| LweI | GCATC | 6 cut(s) | 134, 340, 369, 382, 746, 752 |
| MaeI | CTAG | 1 cut(s) | 347 |
| MaeIII | GTNAC | 5 cut(s) | 9, 20, 370, 416, 1106 |
| MalI | GATC | 7 cut(s) | 678, 831, 837, 882, 933, 984, 1002 |
| MboI | GATC | 7 cut(s) | 676, 829, 835, 880, 931, 982, 1000 |
| MhlI | GDGCHC | 1 cut(s) | 118 |
| MlsI | TGGCCA | 2 cut(s) | 99, 652 |
| MluCI | AATT | 5 cut(s) | 709, 765, 1129, 1150, 1159 |
| MluNI | TGGCCA | 2 cut(s) | 99, 652 |
| MlyI | GAGTC | 4 cut(s) | 575, 692, 1061, 1169 |
| MmeI | TCCRAC | 4 cut(s) | 262, 459, 611, 713 |
| Mox20I | TGGCCA | 2 cut(s) | 99, 652 |
| Mph1103I | ATGCAT | 1 cut(s) | 739 |
| MscI | TGGCCA | 2 cut(s) | 99, 652 |
| MseI | TTAA | 5 cut(s) | 336, 527, 624, 726, 1011 |
| MslI | CAYNNNNRTG | 3 cut(s) | 99, 890, 939 |
| Msp20I | TGGCCA | 2 cut(s) | 99, 652 |
| MspA1I | CMGCKG | 1 cut(s) | 1062 |
| MspCI | CTTAAG | 1 cut(s) | 335 |
| MspI | CCGG | 1 cut(s) | 487 |
| MspR9I | CCNGG | 2 cut(s) | 487, 899 |
| Mva1269I | GAATGC | 1 cut(s) | 739 |
| MvaI | CCWGG | 1 cut(s) | 899 |
| MvnI | CGCG | 2 cut(s) | 1053, 1062 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 153, 552, 1053, 1059 |
| NciI | CCSGG | 1 cut(s) | 487 |
| NcoI | CCATGG | 2 cut(s) | 47, 100 |
| NdeII | GATC | 7 cut(s) | 676, 829, 835, 880, 931, 982, 1000 |
| NheI | GCTAGC | 1 cut(s) | 346 |
| NlaIV | GGNNCC | 3 cut(s) | 585, 759, 796 |
| NmuCI | GTSAC | 5 cut(s) | 9, 20, 370, 416, 1106 |
| NsiI | ATGCAT | 1 cut(s) | 739 |
| PagI | TCATGA | 3 cut(s) | 832, 877, 928 |
| PctI | GAATGC | 1 cut(s) | 739 |
| PfeI | GAWTC | 1 cut(s) | 500 |
| PflFI | GACNNNGTC | 1 cut(s) | 368 |
| PkrI | GCNGC | 8 cut(s) | 510, 548, 601, 604, 774, 1055, 1058, 1061 |
| PleI | GAGTC | 4 cut(s) | 574, 691, 1061, 1169 |
| PpsI | GAGTC | 4 cut(s) | 574, 691, 1061, 1169 |
| PpuMI | RGGWCCY | 1 cut(s) | 795 |
| PshBI | ATTAAT | 2 cut(s) | 527, 726 |
| PsiI | TTATAA | 1 cut(s) | 708 |
| Psp5II | RGGWCCY | 1 cut(s) | 795 |
| Psp6I | CCWGG | 1 cut(s) | 897 |
| PspEI | GGTNACC | 1 cut(s) | 9 |
| PspFI | CCCAGC | 1 cut(s) | 131 |
| PspGI | CCWGG | 1 cut(s) | 897 |
| PspN4I | GGNNCC | 3 cut(s) | 585, 759, 796 |
| PspPI | GGNCC | 2 cut(s) | 44, 795 |
| PspPPI | RGGWCCY | 1 cut(s) | 795 |
| PsyI | GACNNNGTC | 1 cut(s) | 368 |
| RsaI | GTAC | 1 cut(s) | 1029 |
| RsaNI | GTAC | 1 cut(s) | 1028 |
| RseI | CAYNNNNRTG | 3 cut(s) | 99, 890, 939 |
| SacII | CCGCGG | 1 cut(s) | 1063 |
| SalI | GTCGAC | 1 cut(s) | 410 |
| SaqAI | TTAA | 5 cut(s) | 336, 527, 624, 726, 1011 |
| SatI | GCNGC | 8 cut(s) | 509, 547, 600, 603, 773, 1054, 1057, 1060 |
| Sau3AI | GATC | 7 cut(s) | 676, 829, 835, 880, 931, 982, 1000 |
| Sau96I | GGNCC | 2 cut(s) | 44, 795 |
| SchI | GAGTC | 4 cut(s) | 575, 692, 1061, 1169 |
| ScrFI | CCNGG | 2 cut(s) | 487, 899 |
| SduI | GDGCHC | 1 cut(s) | 118 |
| SfaNI | GCATC | 6 cut(s) | 134, 340, 369, 382, 746, 752 |
| SfcI | CTRYAG | 1 cut(s) | 157 |
| Sfr303I | CCGCGG | 1 cut(s) | 1063 |
| SgrBI | CCGCGG | 1 cut(s) | 1063 |
| SinI | GGWCC | 2 cut(s) | 44, 795 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 99, 890, 939 |
| SmlI | CTYRAG | 2 cut(s) | 335, 680 |
| SmoI | CTYRAG | 2 cut(s) | 335, 680 |
| Sse9I | AATT | 5 cut(s) | 709, 765, 1129, 1150, 1159 |
| SsiI | CCGC | 4 cut(s) | 147, 1053, 1060, 1062 |
| SspMI | CTAG | 1 cut(s) | 347 |
| StyD4I | CCNGG | 2 cut(s) | 485, 897 |
| StyI | CCWWGG | 2 cut(s) | 47, 100 |
| TaaI | ACNGT | 4 cut(s) | 15, 409, 416, 521 |
| TaqI | TCGA | 3 cut(s) | 363, 411, 474 |
| TasI | AATT | 5 cut(s) | 709, 765, 1129, 1150, 1159 |
| TatI | WGTACW | 1 cut(s) | 1027 |
| TauI | GCSGC | 2 cut(s) | 1056, 1062 |
| TfiI | GAWTC | 1 cut(s) | 500 |
| Tru1I | TTAA | 5 cut(s) | 336, 527, 624, 726, 1011 |
| Tru9I | TTAA | 5 cut(s) | 336, 527, 624, 726, 1011 |
| TscAI | CASTG | 3 cut(s) | 412, 1003, 1093 |
| TseFI | GTSAC | 5 cut(s) | 9, 20, 370, 416, 1106 |
| TseI | GCWGC | 6 cut(s) | 508, 546, 599, 602, 772, 1056 |
| Tsp45I | GTSAC | 5 cut(s) | 9, 20, 370, 416, 1106 |
| TspDTI | ATGAA | 6 cut(s) | 513, 561, 795, 866, 917, 1038 |
| TspRI | CASTG | 3 cut(s) | 412, 1003, 1093 |
| Tth111I | GACNNNGTC | 1 cut(s) | 368 |
| Vha464I | CTTAAG | 1 cut(s) | 335 |
| VpaK11BI | GGWCC | 2 cut(s) | 44, 795 |
| VspI | ATTAAT | 2 cut(s) | 527, 726 |
| XapI | RAATTY | 1 cut(s) | 1159 |
| XmiI | GTMKAC | 1 cut(s) | 411 |
| XspI | CTAG | 1 cut(s) | 347 |
| Zsp2I | ATGCAT | 1 cut(s) | 739 |