Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Forward (+)

15892316 .. 15894063

Gene Structure 1748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G196100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGGAAAGTCTACTTGCTTTGCTGCAGCATCGGGCATAAAGAGAGGTCCATGGACTCCTGAAGAAGACAGAAAGCTCTTAGATTTCATTCAACTGCATGGCCATGGAAGCTGGAGCTCCTTGCCCCAAAAAGCTGGTTTGAAAAGATGCGGGAAGAGCTGTAGGCTAAGGTGGAGAAACTACCTAAGGCCTGATATTAAGAGGGGAAATTTCAGTTTGCACGAAGACCAAACCATCATTCAACTCCATGCACTTCTAGGCAACAGATGGTCGGCTATAGCTGCGCACTTACCAAAGAGGACAGACAATGAGATCAAGAATTACTGGAACACACATCTCAAGAAACGACTGGCCAAGATAGGGTTTGACCCTGTCACCCACAAGCCCAAGACTGCCATTCTTGGCTCTGCCAATGGTGACCCCAAGAAGTTGTCAAATCTCAGCCACATTGCTCAGTGGGAAAGTGCCAGGCTCCAAGCAGAAGCCAGGTTGTCCAAAGAGTCCGAACTACACAAATCATCAGCTCATCAGCTACTTCACGATCAAACGGCGTCACTTACTCATGATCATCTTCACCATCAGTTTGCCCCACTCGTTCCACAGTGCCTTGACATTCTAAGGGCATCAGCTTGGGAAAGCCTGATATCAATGTCGACAAAGTCATCAAGCTCAGATGCTGATGCACCAACCAGTCACATCAACGGCGGCCAAAATCACGTTTCTTTTGGTTATCATCATGATGTTCATGAGCATGGCGTTAATATCATAAGTAATTTTGAGGGTCCAACATCGGATCATCAGTTCTCAAGCATGACGGAATGTGATGATTCACGGGCCATGTCATCAATGACGACTGGATCGCTGGGTTTGAATGAGCTCATAGGCCAATATTGCGGGAACGAATGCAGTGAATTATTCGAGGCACTCCAGCAATATATGGGGTTTGAAGTTGAGGTCGGGGATGCTTGGACTAGTTTGGAACAATTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

331

Amino Acids

36.83

Weight (kDa)

6.89

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	285
AccI	GTMKAC	2 cut(s)	11, 653
AciI	CCGC	3 cut(s)	150, 705, 894
AclWI	GGATC	2 cut(s)	801, 865
AcoI	YGGCCR	3 cut(s)	100, 351, 706
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	551
AfiI	CCNNNNNNNGG	1 cut(s)	360
AgsI	TTSAA	5 cut(s)	92, 142, 242, 871, 947
AhlI	ACTAGT	1 cut(s)	971
AjnI	CCWGG	2 cut(s)	467, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AloI	GAACNNNNNNTCC	2 cut(s)	785, 817
Alw21I	GWGCWC	2 cut(s)	119, 879
AlwI	GGATC	2 cut(s)	801, 865
AlwNI	CAGNNNCTG	1 cut(s)	677
AoxI	GGCC	6 cut(s)	100, 188, 351, 706, 834, 883
ApeKI	GCWGC	3 cut(s)	23, 26, 281
ApoI	RAATTY	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	3 cut(s)	47, 782, 834
AsuHPI	GGTGA	3 cut(s)	367, 428, 566
AvaII	GGWCC	2 cut(s)	47, 782
AxyI	CCTNAGG	1 cut(s)	185
BalI	TGGCCA	2 cut(s)	102, 353
BanII	GRGCYC	2 cut(s)	119, 879
BbsI	GAAGAC	2 cut(s)	72, 231
Bbv12I	GWGCWC	2 cut(s)	119, 879
BbvI	GCAGC	3 cut(s)	10, 38, 268
BccI	CCATC	3 cut(s)	242, 261, 585
BceAI	ACGGC	2 cut(s)	564, 718
BciT130I	CCWGG	2 cut(s)	469, 487
BclI	TGATCA	1 cut(s)	565
BcuI	ACTAGT	1 cut(s)	971
BfaI	CTAG	2 cut(s)	257, 972
BfmI	CTRYAG	3 cut(s)	24, 160, 276
BisI	GCNGC	4 cut(s)	24, 27, 282, 706
BlsI	GCNGC	4 cut(s)	25, 28, 283, 707
Bme1390I	CCNGG	2 cut(s)	469, 487
Bme18I	GGWCC	2 cut(s)	47, 782
BmgT120I	GGNCC	3 cut(s)	47, 782, 834
BmiI	GGNNCC	2 cut(s)	473, 783
BmrFI	CCNGG	2 cut(s)	469, 487
BmsI	GCATC	6 cut(s)	38, 137, 632, 664, 670, 952
BpiI	GAAGAC	2 cut(s)	72, 231
BpmI	CTGGAG	2 cut(s)	133, 911
Bpu10I	CCTNAGC	1 cut(s)	167
BpuEI	CTTGAG	2 cut(s)	323, 790
BsaHI	GRCGYC	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	50, 103
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse1I	ACTGG	4 cut(s)	329, 354, 690, 859
Bse21I	CCTNAGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	469, 487
BseDI	CCNNGG	2 cut(s)	50, 103
BseGI	GGATG	1 cut(s)	967
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	3 cut(s)	454, 467, 684
BseNI	ACTGG	4 cut(s)	329, 354, 690, 859
BseXI	GCAGC	3 cut(s)	10, 38, 268
BseYI	CCCAGC	1 cut(s)	862
BshFI	GGCC	6 cut(s)	102, 190, 353, 708, 836, 885
BsiHKAI	GWGCWC	2 cut(s)	119, 879
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmI	GAATGC	1 cut(s)	908
BsnI	GGCC	6 cut(s)	102, 190, 353, 708, 836, 885
Bsp1286I	GDGCHC	2 cut(s)	119, 879
Bsp143I	GATC	5 cut(s)	312, 541, 565, 793, 857
Bsp19I	CCATGG	2 cut(s)	50, 103
BspACI	CCGC	3 cut(s)	150, 705, 894
BspANI	GGCC	6 cut(s)	102, 190, 353, 708, 836, 885
BspCNI	CTCAG	3 cut(s)	453, 466, 683
BspHI	TCATGA	3 cut(s)	562, 736, 745
BspLI	GGNNCC	2 cut(s)	473, 783
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	2 cut(s)	801, 865
BspQI	GCTCTTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	447
BsrI	ACTGG	4 cut(s)	329, 354, 690, 859
BssECI	CCNNGG	2 cut(s)	50, 103
BssMI	GATC	5 cut(s)	312, 541, 565, 793, 857
BssNI	GRCGYC	1 cut(s)	551
BssT1I	CCWWGG	2 cut(s)	50, 103
Bst2UI	CCWGG	2 cut(s)	469, 487
Bst4CI	ACNGT	1 cut(s)	603
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	551
BstDEI	CTNAG	7 cut(s)	79, 167, 185, 440, 453, 617, 670
BstDSI	CCRYGG	2 cut(s)	50, 103
BstEII	GGTNACC	1 cut(s)	416
BstF5I	GGATG	1 cut(s)	967
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	5 cut(s)	315, 544, 568, 796, 860
BstMBI	GATC	5 cut(s)	312, 541, 565, 793, 857
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 156, 281, 891
BstNI	CCWGG	2 cut(s)	469, 487
BstPI	GGTNACC	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	467, 485
BstSFI	CTRYAG	3 cut(s)	24, 160, 276
BstV1I	GCAGC	3 cut(s)	10, 38, 268
BstV2I	GAAGAC	2 cut(s)	72, 231
BstXI	CCANNNNNNTGG	1 cut(s)	134
Bsu36I	CCTNAGG	1 cut(s)	185
BsuRI	GGCC	6 cut(s)	102, 190, 353, 708, 836, 885
BtgI	CCRYGG	2 cut(s)	50, 103
BtsCI	GGATG	1 cut(s)	967
BtsI	GCAGTG	1 cut(s)	913
BtsIMutI	CAGTG	3 cut(s)	461, 608, 913
CaiI	CAGNNNCTG	1 cut(s)	677
CciI	TCATGA	3 cut(s)	562, 736, 745
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	3 cut(s)	47, 782, 834
CseI	GACGC	1 cut(s)	540
DdeI	CTNAG	7 cut(s)	79, 167, 185, 440, 453, 617, 670
DpnI	GATC	5 cut(s)	314, 543, 567, 795, 859
DpnII	GATC	5 cut(s)	312, 541, 565, 793, 857
EaeI	YGGCCR	3 cut(s)	100, 351, 706
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Ecl136II	GAGCTC	2 cut(s)	117, 877
Eco130I	CCWWGG	2 cut(s)	50, 103
Eco147I	AGGCCT	1 cut(s)	190
Eco24I	GRGCYC	2 cut(s)	119, 879
Eco32I	GATATC	1 cut(s)	645
Eco47I	GGWCC	2 cut(s)	47, 782
Eco53kI	GAGCTC	2 cut(s)	117, 877
Eco57I	CTGAAG	1 cut(s)	81
Eco81I	CCTNAGG	1 cut(s)	185
Eco91I	GGTNACC	1 cut(s)	416
EcoICRI	GAGCTC	2 cut(s)	117, 877
EcoO65I	GGTNACC	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	467, 485
EcoRV	GATATC	1 cut(s)	645
EcoT14I	CCWWGG	2 cut(s)	50, 103
EcoT38I	GRGCYC	2 cut(s)	119, 879
ErhI	CCWWGG	2 cut(s)	50, 103
FauI	CCCGC	2 cut(s)	143, 887
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	2 cut(s)	11, 653
Fnu4HI	GCNGC	4 cut(s)	24, 27, 282, 706
FokI	GGATG	1 cut(s)	974
FriOI	GRGCYC	2 cut(s)	119, 879
Fsp4HI	GCNGC	4 cut(s)	24, 27, 282, 706
FspBI	CTAG	2 cut(s)	257, 972
FspI	TGCGCA	1 cut(s)	285
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	4 cut(s)	24, 27, 282, 706
GsaI	CCCAGC	1 cut(s)	866
GsuI	CTGGAG	2 cut(s)	133, 911
HaeIII	GGCC	6 cut(s)	102, 190, 353, 708, 836, 885
HgaI	GACGC	1 cut(s)	540
HhaI	GCGC	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	551
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	654
HindII	GTYRAC	1 cut(s)	654
HinfI	GANTC	3 cut(s)	55, 500, 827
HphI	GGTGA	3 cut(s)	367, 428, 566
Hpy166II	GTNNAC	2 cut(s)	12, 654
Hpy188I	TCNGA	3 cut(s)	505, 673, 793
Hpy188III	TCNNGA	7 cut(s)	59, 316, 340, 539, 563, 737, 746
Hpy8I	GTNNAC	2 cut(s)	12, 654
HpyCH4III	ACNGT	1 cut(s)	603
HpyCH4IV	ACGT	1 cut(s)	717
HpyCH4V	TGCA	6 cut(s)	26, 97, 220, 251, 683, 906
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 156, 281, 891
HpyF3I	CTNAG	7 cut(s)	79, 167, 185, 440, 453, 617, 670
HpySE526I	ACGT	1 cut(s)	717
Hsp92I	GRCGYC	1 cut(s)	551
HspAI	GCGC	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	5 cut(s)	312, 541, 565, 793, 857
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	3 cut(s)	114, 122, 477
Lsp1109I	GCAGC	3 cut(s)	10, 38, 268
LweI	GCATC	6 cut(s)	38, 137, 632, 664, 670, 952
MaeI	CTAG	2 cut(s)	257, 972
MaeII	ACGT	1 cut(s)	717
MaeIII	GTNAC	4 cut(s)	373, 416, 552, 692
MalI	GATC	5 cut(s)	314, 543, 567, 795, 859
MboI	GATC	5 cut(s)	312, 541, 565, 793, 857
MboII	GAAGA	5 cut(s)	74, 77, 166, 236, 563
MhlI	GDGCHC	2 cut(s)	119, 879
MlsI	TGGCCA	2 cut(s)	102, 353
MluCI	AATT	5 cut(s)	208, 319, 772, 911, 983
MluNI	TGGCCA	2 cut(s)	102, 353
MlyI	GAGTC	2 cut(s)	49, 509
MmeI	TCCRAC	1 cut(s)	809
MnlI	CCTC	6 cut(s)	38, 195, 291, 772, 913, 946
Mox20I	TGGCCA	2 cut(s)	102, 353
MscI	TGGCCA	2 cut(s)	102, 353
MseI	TTAA	2 cut(s)	198, 759
MslI	CAYNNNNRTG	3 cut(s)	102, 738, 750
Msp20I	TGGCCA	2 cut(s)	102, 353
MspR9I	CCNGG	2 cut(s)	469, 487
Mva1269I	GAATGC	1 cut(s)	908
MvaI	CCWGG	2 cut(s)	469, 487
MwoI	GCNNNNNNNGC	4 cut(s)	108, 156, 281, 891
NcoI	CCATGG	2 cut(s)	50, 103
NdeII	GATC	5 cut(s)	312, 541, 565, 793, 857
NlaIV	GGNNCC	2 cut(s)	473, 783
NmuCI	GTSAC	4 cut(s)	373, 416, 552, 692
NsbI	TGCGCA	1 cut(s)	285
PagI	TCATGA	3 cut(s)	562, 736, 745
PceI	AGGCCT	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	149
PctI	GAATGC	1 cut(s)	908
PfeI	GAWTC	1 cut(s)	827
PflFI	GACNNNGTC	2 cut(s)	371, 658
PkrI	GCNGC	4 cut(s)	25, 28, 283, 707
PleI	GAGTC	2 cut(s)	49, 508
PpsI	GAGTC	2 cut(s)	49, 508
Psp124BI	GAGCTC	2 cut(s)	119, 879
Psp6I	CCWGG	2 cut(s)	467, 485
PspEI	GGTNACC	1 cut(s)	416
PspFI	CCCAGC	1 cut(s)	862
PspGI	CCWGG	2 cut(s)	467, 485
PspN4I	GGNNCC	2 cut(s)	473, 783
PspPI	GGNCC	3 cut(s)	47, 782, 834
PstI	CTGCAG	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	677
PsyI	GACNNNGTC	2 cut(s)	371, 658
RseI	CAYNNNNRTG	3 cut(s)	102, 738, 750
SacI	GAGCTC	2 cut(s)	119, 879
SalI	GTCGAC	1 cut(s)	652
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	198, 759
SatI	GCNGC	4 cut(s)	24, 27, 282, 706
Sau3AI	GATC	5 cut(s)	312, 541, 565, 793, 857
Sau96I	GGNCC	3 cut(s)	47, 782, 834
SchI	GAGTC	2 cut(s)	49, 509
ScrFI	CCNGG	2 cut(s)	469, 487
SduI	GDGCHC	2 cut(s)	119, 879
SfaNI	GCATC	6 cut(s)	38, 137, 632, 664, 670, 952
SfcI	CTRYAG	3 cut(s)	24, 160, 276
SinI	GGWCC	2 cut(s)	47, 782
SmiMI	CAYNNNNRTG	3 cut(s)	102, 738, 750
SmlI	CTYRAG	2 cut(s)	338, 805
SmoI	CTYRAG	2 cut(s)	338, 805
SpeI	ACTAGT	1 cut(s)	971
Sse9I	AATT	5 cut(s)	208, 319, 772, 911, 983
SseBI	AGGCCT	1 cut(s)	190
SsiI	CCGC	3 cut(s)	150, 705, 894
SspI	AATATT	1 cut(s)	890
SspMI	CTAG	2 cut(s)	257, 972
SstI	GAGCTC	2 cut(s)	119, 879
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	2 cut(s)	467, 485
StyI	CCWWGG	2 cut(s)	50, 103
TaaI	ACNGT	1 cut(s)	603
TaiI	ACGT	1 cut(s)	720
TaqI	TCGA	2 cut(s)	653, 918
TasI	AATT	5 cut(s)	208, 319, 772, 911, 983
TauI	GCSGC	1 cut(s)	708
TfiI	GAWTC	1 cut(s)	827
Tru1I	TTAA	2 cut(s)	198, 759
Tru9I	TTAA	2 cut(s)	198, 759
TscAI	CASTG	3 cut(s)	461, 608, 913
TseFI	GTSAC	4 cut(s)	373, 416, 552, 692
TseI	GCWGC	3 cut(s)	23, 26, 281
Tsp45I	GTSAC	4 cut(s)	373, 416, 552, 692
TspDTI	ATGAA	2 cut(s)	76, 734
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	3 cut(s)	461, 608, 913
Tth111I	GACNNNGTC	2 cut(s)	371, 658
VpaK11BI	GGWCC	2 cut(s)	47, 782
XapI	RAATTY	1 cut(s)	208
XmiI	GTMKAC	2 cut(s)	11, 653
XspI	CTAG	2 cut(s)	257, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.