Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Forward (+)

3099053 .. 3100955

Gene Structure 1903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G003820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGGAAGTCCAGAACGTTAACTAACAGCACTGCTACGACTTCAGAGATAAAAAGAGGGCCATGGACTCCTCAAGAGGACAAGAAGCTCTTTGCTTTCATTCAACAACATGGCCATGGAAGCTGGCGGTCCTTGCCCAAGAAAGCTGGTTTACAAAGATGTGGGAAGAGCTGCAGGCTAAGATGGAGAAACTACCTAAACCCTGCTATTAAGAGAGGAAATTTCAGTTTGCAGGAAGACCAGACCATCATTCAGCTTCATGCACTTCTCGGCAACAGGTGGTCAGCCATAGCTGCGAACTTACCAAGGAGAACAGACAATGAGATAAAGAACTACTGGAACACACATCTAAAGAAGAGGTTAGCCAAGACAGGGTTTGATCCTGTAACCCACAAACCCAAAACCGCCATCCTTGCCTCTGCTAATGGCGACCCAAAGAACCTGTCAAACCTCAGCCACATAGCTCAGTGGGAAAGTGCTAGGCTTCAAGCAGAAGCTAGATTTGTGAGACAGTCAAAACTAATCAAACCAGCACCGCCAGCACCACAGTGCCTTGACTTCAATTTAAGAACATGGGAAACCCTAATGATGTCAAAGTCATTAGCTGCAGGCGGTGGTGGTGGCGATGAAGCCGGTGGTGATGGTCGTGCCACTAATGTTGTTCAAGAGGTTGGTTCATTCTGTAATTTTGACGGTGTACTTGGTAATAATGGTAGACAGTTTGAAGTTCCAAAATTAACCATACCAGCAGCTCCGGATTTCAATGAAGTTTCAGAGGAGAGTGGTACTGATGAATACGGTGACCTATTTGAGGCACTACTACCCCAGCACATCTACAATAATACTGGGTTTGATGTCGTGGATGCTTGGAGTTTGGAACAATGTAATGATATCAGTGCAGACTATCAAAATGTGATCATGAGCGGGGGGTTGAAAAACCTATTTATGTTCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

318

Amino Acids

35.36

Weight (kDa)

9.15

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	19 - 66	6.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	22 - 82	1.6e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	72 - 117	2.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	75 - 127	1.7e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	924
AccI	GTMKAC	1 cut(s)	715
AccIII	TCCGGA	1 cut(s)	754
AciI	CCGC	5 cut(s)	127, 405, 536, 612, 924
AclI	AACGTT	1 cut(s)	17
AclWI	GGATC	1 cut(s)	374
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	2 cut(s)	699, 787
AfiI	CCNNNNNNNGG	2 cut(s)	372, 811
AgsI	TTSAA	7 cut(s)	104, 488, 562, 665, 725, 763, 934
AleI	CACNNNNGTG	1 cut(s)	547
Alw26I	GTCTC	1 cut(s)	502
AlwI	GGATC	1 cut(s)	374
Aor13HI	TCCGGA	1 cut(s)	754
AoxI	GGCC	2 cut(s)	59, 112
ApeKI	GCWGC	4 cut(s)	171, 293, 605, 749
ApoI	RAATTY	1 cut(s)	220
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
AspS9I	GGNCC	2 cut(s)	59, 129
AsuHPI	GGTGA	2 cut(s)	650, 812
AvaII	GGWCC	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	243
BbvCI	CCTCAGC	1 cut(s)	452
BbvI	GCAGC	4 cut(s)	158, 280, 592, 761
BccI	CCATC	4 cut(s)	177, 254, 416, 635
BclI	TGATCA	1 cut(s)	915
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	2 cut(s)	480, 498
BfmI	CTRYAG	2 cut(s)	172, 606
BisI	GCNGC	4 cut(s)	172, 294, 606, 750
BlsI	GCNGC	4 cut(s)	173, 295, 607, 751
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	59, 129
BmrI	ACTGGG	1 cut(s)	855
BmsI	GCATC	1 cut(s)	853
BmuI	ACTGGG	1 cut(s)	855
BpiI	GAAGAC	1 cut(s)	243
Bpu10I	CCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	62, 115, 305
BsaWI	WCCGGW	2 cut(s)	754, 951
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 811
Bse118I	RCCGGY	1 cut(s)	632
Bse1I	ACTGG	2 cut(s)	341, 850
BseAI	TCCGGA	1 cut(s)	754
BseDI	CCNNGG	3 cut(s)	62, 115, 305
BseGI	GGATG	2 cut(s)	408, 868
BseLI	CCNNNNNNNGG	2 cut(s)	372, 811
BseMII	CTCAG	2 cut(s)	466, 479
BseNI	ACTGG	2 cut(s)	341, 850
BseRI	GAGGAG	2 cut(s)	60, 791
BseXI	GCAGC	4 cut(s)	158, 280, 592, 761
BseYI	CCCAGC	1 cut(s)	825
BsgI	GTGCAG	1 cut(s)	918
BshFI	GGCC	2 cut(s)	61, 114
BsiSI	CCGG	3 cut(s)	633, 755, 952
BslI	CCNNNNNNNGG	2 cut(s)	372, 811
BsmAI	GTCTC	1 cut(s)	502
BsnI	GGCC	2 cut(s)	61, 114
Bsp13I	TCCGGA	1 cut(s)	754
Bsp143I	GATC	2 cut(s)	379, 915
Bsp19I	CCATGG	2 cut(s)	62, 115
BspACI	CCGC	5 cut(s)	127, 405, 536, 612, 924
BspANI	GGCC	2 cut(s)	61, 114
BspCNI	CTCAG	2 cut(s)	465, 478
BspEI	TCCGGA	1 cut(s)	754
BspHI	TCATGA	1 cut(s)	918
BspMAI	CTGCAG	2 cut(s)	176, 610
BspPI	GGATC	1 cut(s)	374
BspQI	GCTCTTC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	924
BsrFI	RCCGGY	1 cut(s)	632
BsrI	ACTGG	2 cut(s)	341, 850
BssAI	RCCGGY	1 cut(s)	632
BssECI	CCNNGG	3 cut(s)	62, 115, 305
BssMI	GATC	2 cut(s)	379, 915
BssT1I	CCWWGG	3 cut(s)	62, 115, 305
Bst4CI	ACNGT	5 cut(s)	513, 549, 695, 720, 800
Bst6I	CTCTTC	2 cut(s)	161, 350
BstC8I	GCNNGC	4 cut(s)	125, 176, 540, 610
BstDEI	CTNAG	3 cut(s)	179, 452, 465
BstDSI	CCRYGG	2 cut(s)	62, 115
BstEII	GGTNACC	1 cut(s)	800
BstENI	CCTNNNNNAGG	1 cut(s)	809
BstF5I	GGATG	2 cut(s)	408, 868
BstKTI	GATC	2 cut(s)	382, 918
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	2 cut(s)	379, 915
BstMWI	GCNNNNNNNGC	5 cut(s)	120, 133, 293, 413, 539
BstPI	GGTNACC	1 cut(s)	800
BstSFI	CTRYAG	2 cut(s)	172, 606
BstV1I	GCAGC	4 cut(s)	158, 280, 592, 761
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	61, 114
BtgI	CCRYGG	2 cut(s)	62, 115
BtgZI	GCGATG	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	408, 868
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	4 cut(s)	30, 473, 554, 901
Cac8I	GCNNGC	4 cut(s)	125, 176, 540, 610
CciI	TCATGA	1 cut(s)	918
Cfr10I	RCCGGY	1 cut(s)	632
Cfr13I	GGNCC	2 cut(s)	59, 129
Csp6I	GTAC	2 cut(s)	698, 786
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	6 cut(s)	63, 110, 116, 260, 573, 919
CviQI	GTAC	2 cut(s)	698, 786
DdeI	CTNAG	3 cut(s)	179, 452, 465
DpnI	GATC	2 cut(s)	381, 917
DpnII	GATC	2 cut(s)	379, 915
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	161, 350
EarI	CTCTTC	2 cut(s)	161, 350
Eco130I	CCWWGG	3 cut(s)	62, 115, 305
Eco32I	GATATC	1 cut(s)	892
Eco47I	GGWCC	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	27
Eco91I	GGTNACC	1 cut(s)	800
EcoNI	CCTNNNNNAGG	1 cut(s)	809
EcoO65I	GGTNACC	1 cut(s)	800
EcoRV	GATATC	1 cut(s)	892
EcoT14I	CCWWGG	3 cut(s)	62, 115, 305
ErhI	CCWWGG	3 cut(s)	62, 115, 305
FaeI	CATG	6 cut(s)	66, 113, 119, 263, 576, 922
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	6 cut(s)	62, 109, 115, 259, 572, 918
FauI	CCCGC	1 cut(s)	917
FbaI	TGATCA	1 cut(s)	915
FblI	GTMKAC	1 cut(s)	715
Fnu4HI	GCNGC	4 cut(s)	172, 294, 606, 750
FokI	GGATG	2 cut(s)	395, 875
Fsp4HI	GCNGC	4 cut(s)	172, 294, 606, 750
FspBI	CTAG	2 cut(s)	480, 498
GluI	GCNGC	4 cut(s)	172, 294, 606, 750
GsaI	CCCAGC	1 cut(s)	829
HaeIII	GGCC	2 cut(s)	61, 114
HapII	CCGG	3 cut(s)	633, 755, 952
Hin1II	CATG	6 cut(s)	66, 113, 119, 263, 576, 922
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	67
HpaI	GTTAAC	1 cut(s)	21
HpaII	CCGG	3 cut(s)	633, 755, 952
HphI	GGTGA	2 cut(s)	650, 812
Hpy166II	GTNNAC	4 cut(s)	21, 152, 698, 716
Hpy188I	TCNGA	2 cut(s)	46, 775
Hpy188III	TCNNGA	5 cut(s)	12, 74, 665, 755, 919
Hpy8I	GTNNAC	4 cut(s)	21, 152, 698, 716
HpyCH4III	ACNGT	5 cut(s)	513, 549, 695, 720, 800
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	5 cut(s)	174, 232, 263, 608, 899
HpyF10VI	GCNNNNNNNGC	5 cut(s)	120, 133, 293, 413, 539
HpyF3I	CTNAG	3 cut(s)	179, 452, 465
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	6 cut(s)	66, 113, 119, 263, 576, 922
Kpn2I	TCCGGA	1 cut(s)	754
Ksp22I	TGATCA	1 cut(s)	915
KspAI	GTTAAC	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	379, 915
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	1 cut(s)	757
Lsp1109I	GCAGC	4 cut(s)	158, 280, 592, 761
LweI	GCATC	1 cut(s)	853
MaeI	CTAG	2 cut(s)	480, 498
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	385, 800
MalI	GATC	2 cut(s)	381, 917
MbiI	CCGCTC	1 cut(s)	924
MboI	GATC	2 cut(s)	379, 915
MboII	GAAGA	3 cut(s)	178, 248, 367
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	4 cut(s)	220, 562, 685, 734
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	61
Mox20I	TGGCCA	1 cut(s)	114
MroI	TCCGGA	1 cut(s)	754
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	4 cut(s)	20, 210, 566, 737
MslI	CAYNNNNRTG	2 cut(s)	114, 547
Msp20I	TGGCCA	1 cut(s)	114
MspI	CCGG	3 cut(s)	633, 755, 952
MwoI	GCNNNNNNNGC	5 cut(s)	120, 133, 293, 413, 539
NcoI	CCATGG	2 cut(s)	62, 115
NdeII	GATC	2 cut(s)	379, 915
NlaIII	CATG	6 cut(s)	66, 113, 119, 263, 576, 922
NmeAIII	GCCGAG	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	800
OliI	CACNNNNGTG	1 cut(s)	547
PagI	TCATGA	1 cut(s)	918
PciSI	GCTCTTC	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	173, 295, 607, 751
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp1406I	AACGTT	1 cut(s)	17
PspEI	GGTNACC	1 cut(s)	800
PspFI	CCCAGC	1 cut(s)	825
PspPI	GGNCC	2 cut(s)	59, 129
PstI	CTGCAG	2 cut(s)	176, 610
RsaI	GTAC	2 cut(s)	699, 787
RsaNI	GTAC	2 cut(s)	698, 786
RseI	CAYNNNNRTG	2 cut(s)	114, 547
SapI	GCTCTTC	1 cut(s)	161
SaqAI	TTAA	4 cut(s)	20, 210, 566, 737
SatI	GCNGC	4 cut(s)	172, 294, 606, 750
Sau3AI	GATC	2 cut(s)	379, 915
Sau96I	GGNCC	2 cut(s)	59, 129
SchI	GAGTC	1 cut(s)	61
SfaNI	GCATC	1 cut(s)	853
SfcI	CTRYAG	2 cut(s)	172, 606
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	2 cut(s)	114, 547
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	4 cut(s)	220, 562, 685, 734
SsiI	CCGC	5 cut(s)	127, 405, 536, 612, 924
SspMI	CTAG	2 cut(s)	480, 498
StyI	CCWWGG	3 cut(s)	62, 115, 305
TaaI	ACNGT	5 cut(s)	513, 549, 695, 720, 800
TaiI	ACGT	1 cut(s)	20
TasI	AATT	4 cut(s)	220, 562, 685, 734
TatI	WGTACW	1 cut(s)	697
Tru1I	TTAA	4 cut(s)	20, 210, 566, 737
Tru9I	TTAA	4 cut(s)	20, 210, 566, 737
TscAI	CASTG	4 cut(s)	37, 473, 554, 901
TseFI	GTSAC	1 cut(s)	800
TseI	GCWGC	4 cut(s)	171, 293, 605, 749
Tsp45I	GTSAC	1 cut(s)	800
TspDTI	ATGAA	6 cut(s)	88, 248, 642, 666, 780, 807
TspRI	CASTG	4 cut(s)	37, 473, 554, 901
VpaK11BI	GGWCC	1 cut(s)	129
XagI	CCTNNNNNAGG	1 cut(s)	809
XapI	RAATTY	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	715
XspI	CTAG	2 cut(s)	480, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.