Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 1 cut(s) | 91 |
| AgsI | TTSAA | 2 cut(s) | 251, 261 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 73, 105 |
| AluBI | AGCT | 2 cut(s) | 59, 66 |
| AluI | AGCT | 2 cut(s) | 59, 66 |
| Alw21I | GWGCWC | 1 cut(s) | 321 |
| Alw26I | GTCTC | 2 cut(s) | 51, 312 |
| Alw44I | GTGCAC | 1 cut(s) | 317 |
| ApaLI | GTGCAC | 1 cut(s) | 317 |
| ApeKI | GCWGC | 1 cut(s) | 59 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 237 |
| AsuHPI | GGTGA | 1 cut(s) | 227 |
| AsuII | TTCGAA | 1 cut(s) | 156 |
| BaeGI | GKGCMC | 1 cut(s) | 321 |
| BbsI | GAAGAC | 1 cut(s) | 258 |
| Bbv12I | GWGCWC | 1 cut(s) | 321 |
| BbvI | GCAGC | 1 cut(s) | 46 |
| BcoDI | GTCTC | 2 cut(s) | 51, 312 |
| BfaI | CTAG | 1 cut(s) | 314 |
| BisI | GCNGC | 1 cut(s) | 60 |
| BlsI | GCNGC | 1 cut(s) | 61 |
| BmsI | GCATC | 1 cut(s) | 236 |
| BpiI | GAAGAC | 1 cut(s) | 258 |
| BpmI | CTGGAG | 1 cut(s) | 153 |
| Bpu14I | TTCGAA | 1 cut(s) | 156 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 91 |
| Bse1I | ACTGG | 1 cut(s) | 136 |
| BseGI | GGATG | 1 cut(s) | 100 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 91 |
| BseMII | CTCAG | 1 cut(s) | 156 |
| BseNI | ACTGG | 1 cut(s) | 136 |
| BseRI | GAGGAG | 2 cut(s) | 168, 314 |
| BseSI | GKGCMC | 1 cut(s) | 321 |
| BseXI | GCAGC | 1 cut(s) | 46 |
| BsiHKAI | GWGCWC | 1 cut(s) | 321 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 91 |
| BsmAI | GTCTC | 2 cut(s) | 51, 312 |
| Bsp119I | TTCGAA | 1 cut(s) | 156 |
| Bsp1286I | GDGCHC | 1 cut(s) | 321 |
| BspCNI | CTCAG | 1 cut(s) | 157 |
| BspHI | TCATGA | 1 cut(s) | 49 |
| BspT104I | TTCGAA | 1 cut(s) | 156 |
| BsrI | ACTGG | 1 cut(s) | 136 |
| Bst4CI | ACNGT | 2 cut(s) | 23, 306 |
| Bst6I | CTCTTC | 2 cut(s) | 315, 330 |
| BstBI | TTCGAA | 1 cut(s) | 156 |
| BstC8I | GCNNGC | 1 cut(s) | 64 |
| BstDEI | CTNAG | 2 cut(s) | 165, 357 |
| BstF5I | GGATG | 1 cut(s) | 100 |
| BstMAI | GTCTC | 2 cut(s) | 51, 312 |
| BstSLI | GKGCMC | 1 cut(s) | 321 |
| BstV1I | GCAGC | 1 cut(s) | 46 |
| BstV2I | GAAGAC | 1 cut(s) | 258 |
| BtsCI | GGATG | 1 cut(s) | 100 |
| BtsIMutI | CAGTG | 3 cut(s) | 28, 129, 162 |
| Cac8I | GCNNGC | 1 cut(s) | 64 |
| CciI | TCATGA | 1 cut(s) | 49 |
| CviAII | CATG | 2 cut(s) | 50, 200 |
| CviJI | RGCY | 4 cut(s) | 59, 66, 128, 161 |
| CviKI_1 | RGCY | 4 cut(s) | 59, 66, 128, 161 |
| DdeI | CTNAG | 2 cut(s) | 165, 357 |
| DraI | TTTAAA | 1 cut(s) | 76 |
| Eam1104I | CTCTTC | 2 cut(s) | 315, 330 |
| EarI | CTCTTC | 2 cut(s) | 315, 330 |
| FaeI | CATG | 2 cut(s) | 53, 203 |
| FaiI | YATR | 6 cut(s) | 28, 39, 51, 101, 173, 201 |
| FatI | CATG | 2 cut(s) | 49, 199 |
| Fnu4HI | GCNGC | 1 cut(s) | 60 |
| FokI | GGATG | 1 cut(s) | 107 |
| Fsp4HI | GCNGC | 1 cut(s) | 60 |
| FspBI | CTAG | 1 cut(s) | 314 |
| GluI | GCNGC | 1 cut(s) | 60 |
| GsuI | CTGGAG | 1 cut(s) | 153 |
| Hin1II | CATG | 2 cut(s) | 53, 203 |
| HindIII | AAGCTT | 1 cut(s) | 64 |
| HinfI | GANTC | 2 cut(s) | 81, 175 |
| HphI | GGTGA | 1 cut(s) | 227 |
| Hpy166II | GTNNAC | 1 cut(s) | 319 |
| Hpy188I | TCNGA | 1 cut(s) | 232 |
| Hpy188III | TCNNGA | 1 cut(s) | 50 |
| Hpy8I | GTNNAC | 1 cut(s) | 319 |
| HpyAV | CCTTC | 1 cut(s) | 206 |
| HpyCH4III | ACNGT | 2 cut(s) | 23, 306 |
| HpyCH4V | TGCA | 2 cut(s) | 62, 319 |
| HpyF3I | CTNAG | 2 cut(s) | 165, 357 |
| Hsp92II | CATG | 2 cut(s) | 53, 203 |
| LpnPI | CCDG | 3 cut(s) | 117, 135, 195 |
| Lsp1109I | GCAGC | 1 cut(s) | 46 |
| LweI | GCATC | 1 cut(s) | 236 |
| MaeI | CTAG | 1 cut(s) | 314 |
| MaeIII | GTNAC | 1 cut(s) | 339 |
| MboII | GAAGA | 6 cut(s) | 44, 203, 245, 263, 302, 347 |
| MhlI | GDGCHC | 1 cut(s) | 321 |
| MluCI | AATT | 1 cut(s) | 88 |
| MlyI | GAGTC | 1 cut(s) | 169 |
| MnlI | CCTC | 5 cut(s) | 130, 160, 189, 332, 335 |
| MroXI | GAANNNNTTC | 1 cut(s) | 237 |
| MseI | TTAA | 1 cut(s) | 75 |
| NlaIII | CATG | 2 cut(s) | 53, 203 |
| NspV | TTCGAA | 1 cut(s) | 156 |
| PagI | TCATGA | 1 cut(s) | 49 |
| PdmI | GAANNNNTTC | 1 cut(s) | 237 |
| PfeI | GAWTC | 1 cut(s) | 81 |
| PkrI | GCNGC | 1 cut(s) | 61 |
| PleI | GAGTC | 1 cut(s) | 169 |
| PpsI | GAGTC | 1 cut(s) | 169 |
| SaqAI | TTAA | 1 cut(s) | 75 |
| SatI | GCNGC | 1 cut(s) | 60 |
| SchI | GAGTC | 1 cut(s) | 169 |
| SduI | GDGCHC | 1 cut(s) | 321 |
| SetI | ASST | 6 cut(s) | 61, 68, 154, 171, 217, 324 |
| SfaNI | GCATC | 1 cut(s) | 236 |
| SfuI | TTCGAA | 1 cut(s) | 156 |
| Sse9I | AATT | 1 cut(s) | 88 |
| SspMI | CTAG | 1 cut(s) | 314 |
| TaaI | ACNGT | 2 cut(s) | 23, 306 |
| TaqI | TCGA | 2 cut(s) | 156, 204 |
| TasI | AATT | 1 cut(s) | 88 |
| TfiI | GAWTC | 1 cut(s) | 81 |
| Tru1I | TTAA | 1 cut(s) | 75 |
| Tru9I | TTAA | 1 cut(s) | 75 |
| TscAI | CASTG | 3 cut(s) | 28, 136, 169 |
| TseI | GCWGC | 1 cut(s) | 59 |
| TspDTI | ATGAA | 4 cut(s) | 30, 69, 204, 311 |
| TspRI | CASTG | 3 cut(s) | 28, 136, 169 |
| VneI | GTGCAC | 1 cut(s) | 317 |
| XmnI | GAANNNNTTC | 1 cut(s) | 237 |
| XspI | CTAG | 1 cut(s) | 314 |