Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Forward (+)

29846542 .. 29847819

Gene Structure 1278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGAAGGCAATCTAATACTGTTGCATCTCCTGGAATAAGGAGAGGTCCATGGACTCCTCAGGAGGACAAGAAGCTCTTTGCTTTCGTTCAACAACATGGCCATGGAAGCTGGCGTTCCTTATCCCAGAAAGCTGGTCTCCAAAGATGTGGAAAGAGCTGCAGGCTAAGATGGAGAAACTATCTAAACCCTGATATTAAGAGAGGAAATTTCAGTTTGCAGGAAGACCAGACCATCATTCTACTTCATGCACTTTTGGGCAACAGAACAGACAATGAGATAAAGAACTACTGGAACACACATCTAAAGAAGAGGTTAGCCAAGATAGGGTTTGATCCTGAAACCCACAAGCCCAAGACCGCCATCCTCGCCTCTGCTGATGGCGGCGACCCGAAGAACCTCTCAAACCTCAGCCACATAGCTCAGTGGGAAAATGCTCGGCTTCAAGCAGAAGCTAGATTATCCAGACAGTCAAAACTACTCATCAGTCATGACCAACCTCCTAGATTTGGACCCGTGCCTGTACCACAATGCCTTGACATGAATGAAAGAGCACGAGAAATTCGATTACTGTTAAAGTCAATATTAGCTGCAGACAGTGGTGCCCAATTAGGTGGTGGTATTGGTAGTACAGCCACCCACGTTGGGCAGGAGGTTGGTTCATTTGGTAAAGTTGATGTTGAGGGCTTGCTTACTAATTGTGATCAGCTTGAGGCTCCAAGAGCCAGTATATCAGTTCTGGGTTTTGATGAAGTTTTTGGGGAGTCCGGTACTAATAATGACTACGGTGAACTGTTGGAGGCATTACTACAGCACAACCATAACAATACTGGATTTGAAGTTGGGGATGCTTGGAGTTTGGAACAACGTGAAACAGTAATGATGAGCGAGCCGGGAACAACGTACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

303

Amino Acids

33.57

Weight (kDa)

7.76

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	2.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 78	2.2e-14	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	602
AciI	CCGC	2 cut(s)	360, 384
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	208, 561
AfaI	GTAC	4 cut(s)	525, 631, 772, 905
AfiI	CCNNNNNNNGG	3 cut(s)	327, 509, 645
AgsI	TTSAA	3 cut(s)	92, 446, 839
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	8 cut(s)	76, 111, 134, 159, 422, 455, 590, 709
AluI	AGCT	8 cut(s)	76, 111, 134, 159, 422, 455, 590, 709
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	329
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	159, 590
ApoI	RAATTY	2 cut(s)	208, 561
AspS9I	GGNCC	2 cut(s)	47, 512
AsuC2I	CCSGG	1 cut(s)	894
AsuHPI	GGTGA	1 cut(s)	800
AvaII	GGWCC	2 cut(s)	47, 512
AxyI	CCTNAGG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	607
BalI	TGGCCA	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	602
BauI	CACGAG	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	556
BbvCI	CCTCAGC	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	146, 577
BccI	CCATC	4 cut(s)	165, 242, 371, 374
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	703
BcnI	CCSGG	1 cut(s)	894
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	2 cut(s)	456, 504
BfmI	CTRYAG	3 cut(s)	160, 591, 809
BisI	GCNGC	3 cut(s)	160, 385, 591
BlsI	GCNGC	3 cut(s)	161, 386, 592
Bme1390I	CCNGG	2 cut(s)	33, 894
Bme18I	GGWCC	2 cut(s)	47, 512
BmgT120I	GGNCC	2 cut(s)	47, 512
BmiI	GGNNCC	3 cut(s)	514, 604, 717
BmrFI	CCNGG	2 cut(s)	33, 894
BmsI	GCATC	2 cut(s)	35, 838
BpiI	GAAGAC	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	731
BpuMI	CCSGG	1 cut(s)	894
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	50, 103
BsaWI	WCCGGW	1 cut(s)	767
Bsc4I	CCNNNNNNNGG	3 cut(s)	327, 509, 645
Bse1I	ACTGG	3 cut(s)	296, 726, 835
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	50, 103
BseGI	GGATG	2 cut(s)	363, 853
BseLI	CCNNNNNNNGG	3 cut(s)	327, 509, 645
BseMII	CTCAG	3 cut(s)	74, 424, 437
BseNI	ACTGG	3 cut(s)	296, 726, 835
BseRI	GAGGAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	607
BseXI	GCAGC	2 cut(s)	146, 577
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	602
BsiHKAI	GWGCWC	1 cut(s)	556
BsiSI	CCGG	2 cut(s)	768, 893
BslI	CCNNNNNNNGG	3 cut(s)	327, 509, 645
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	556, 607
Bsp143I	GATC	2 cut(s)	334, 703
Bsp19I	CCATGG	2 cut(s)	50, 103
BspACI	CCGC	2 cut(s)	360, 384
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	3 cut(s)	73, 423, 436
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	3 cut(s)	514, 604, 717
BspMAI	CTGCAG	2 cut(s)	164, 595
BspPI	GGATC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	602
BspTNI	GGTCTC	1 cut(s)	143
BsrI	ACTGG	3 cut(s)	296, 726, 835
BssECI	CCNNGG	2 cut(s)	50, 103
BssMI	GATC	2 cut(s)	334, 703
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	2 cut(s)	50, 103
Bst2BI	CACGAG	1 cut(s)	555
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	7 cut(s)	22, 471, 573, 599, 788, 795, 877
Bst6I	CTCTTC	1 cut(s)	305
BstC8I	GCNNGC	4 cut(s)	113, 164, 689, 890
BstDEI	CTNAG	4 cut(s)	60, 167, 410, 423
BstDSI	CCRYGG	2 cut(s)	50, 103
BstF5I	GGATG	2 cut(s)	363, 853
BstKTI	GATC	2 cut(s)	337, 706
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	334, 703
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 368, 722
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	31, 892
BstSFI	CTRYAG	3 cut(s)	160, 591, 809
BstSLI	GKGCMC	1 cut(s)	607
BstV1I	GCAGC	2 cut(s)	146, 577
BstV2I	GAAGAC	1 cut(s)	231
BstXI	CCANNNNNNTGG	3 cut(s)	134, 149, 614
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	2 cut(s)	50, 103
BtsCI	GGATG	2 cut(s)	363, 853
BtsIMutI	CAGTG	2 cut(s)	431, 604
Cac8I	GCNNGC	4 cut(s)	113, 164, 689, 890
CciI	TCATGA	1 cut(s)	490
Cfr13I	GGNCC	2 cut(s)	47, 512
Csp6I	GTAC	4 cut(s)	524, 630, 771, 904
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviAII	CATG	6 cut(s)	51, 98, 104, 248, 491, 541
CviQI	GTAC	4 cut(s)	524, 630, 771, 904
DdeI	CTNAG	4 cut(s)	60, 167, 410, 423
DpnI	GATC	2 cut(s)	336, 705
DpnII	GATC	2 cut(s)	334, 703
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco130I	CCWWGG	2 cut(s)	50, 103
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	47, 512
Eco81I	CCTNAGG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	2 cut(s)	50, 103
ErhI	CCWWGG	2 cut(s)	50, 103
FaeI	CATG	6 cut(s)	54, 101, 107, 251, 494, 544
FaiI	YATR	9 cut(s)	52, 99, 105, 249, 419, 492, 542, 731, 822
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	6 cut(s)	50, 97, 103, 247, 490, 540
FbaI	TGATCA	1 cut(s)	703
Fnu4HI	GCNGC	3 cut(s)	160, 385, 591
FokI	GGATG	2 cut(s)	350, 860
Fsp4HI	GCNGC	3 cut(s)	160, 385, 591
FspBI	CTAG	2 cut(s)	456, 504
GluI	GCNGC	3 cut(s)	160, 385, 591
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	768, 893
Hin1II	CATG	6 cut(s)	54, 101, 107, 251, 494, 544
HinfI	GANTC	2 cut(s)	55, 764
HpaII	CCGG	2 cut(s)	768, 893
HphI	GGTGA	1 cut(s)	800
Hpy166II	GTNNAC	1 cut(s)	791
Hpy188III	TCNNGA	4 cut(s)	62, 338, 465, 491
Hpy8I	GTNNAC	1 cut(s)	791
HpyCH4III	ACNGT	7 cut(s)	22, 471, 573, 599, 788, 795, 877
HpyCH4IV	ACGT	3 cut(s)	642, 868, 902
HpyCH4V	TGCA	5 cut(s)	26, 162, 220, 251, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 368, 722
HpyF3I	CTNAG	4 cut(s)	60, 167, 410, 423
HpySE526I	ACGT	3 cut(s)	642, 868, 902
Hsp92II	CATG	6 cut(s)	54, 101, 107, 251, 494, 544
Ksp22I	TGATCA	1 cut(s)	703
Kzo9I	GATC	2 cut(s)	334, 703
LmnI	GCTCC	1 cut(s)	721
Lsp1109I	GCAGC	2 cut(s)	146, 577
LweI	GCATC	2 cut(s)	35, 838
MaeI	CTAG	2 cut(s)	456, 504
MaeII	ACGT	3 cut(s)	642, 868, 902
MalI	GATC	2 cut(s)	336, 705
MboI	GATC	2 cut(s)	334, 703
MboII	GAAGA	3 cut(s)	236, 322, 406
MhlI	GDGCHC	2 cut(s)	556, 607
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	4 cut(s)	208, 561, 608, 697
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	2 cut(s)	49, 773
MmeI	TCCRAC	1 cut(s)	777
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	2 cut(s)	198, 575
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	2 cut(s)	768, 893
MspR9I	CCNGG	2 cut(s)	33, 894
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	108, 368, 722
NciI	CCSGG	1 cut(s)	894
NcoI	CCATGG	2 cut(s)	50, 103
NdeII	GATC	2 cut(s)	334, 703
NlaIII	CATG	6 cut(s)	54, 101, 107, 251, 494, 544
NlaIV	GGNNCC	3 cut(s)	514, 604, 717
NmeAIII	GCCGAG	1 cut(s)	418
PagI	TCATGA	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	1 cut(s)	562
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	3 cut(s)	161, 386, 592
PleI	GAGTC	2 cut(s)	49, 772
PpsI	GAGTC	2 cut(s)	49, 772
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	3 cut(s)	514, 604, 717
PspPI	GGNCC	2 cut(s)	47, 512
PstI	CTGCAG	2 cut(s)	164, 595
RsaI	GTAC	4 cut(s)	525, 631, 772, 905
RsaNI	GTAC	4 cut(s)	524, 630, 771, 904
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	198, 575
SatI	GCNGC	3 cut(s)	160, 385, 591
Sau3AI	GATC	2 cut(s)	334, 703
Sau96I	GGNCC	2 cut(s)	47, 512
SchI	GAGTC	2 cut(s)	49, 773
ScrFI	CCNGG	2 cut(s)	33, 894
SduI	GDGCHC	2 cut(s)	556, 607
SfaNI	GCATC	2 cut(s)	35, 838
SfcI	CTRYAG	3 cut(s)	160, 591, 809
SinI	GGWCC	2 cut(s)	47, 512
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	4 cut(s)	208, 561, 608, 697
SsiI	CCGC	2 cut(s)	360, 384
SspI	AATATT	1 cut(s)	585
SspMI	CTAG	2 cut(s)	456, 504
StyD4I	CCNGG	2 cut(s)	31, 892
StyI	CCWWGG	2 cut(s)	50, 103
TaaI	ACNGT	7 cut(s)	22, 471, 573, 599, 788, 795, 877
TaiI	ACGT	3 cut(s)	645, 871, 905
TaqI	TCGA	1 cut(s)	565
TasI	AATT	4 cut(s)	208, 561, 608, 697
TatI	WGTACW	1 cut(s)	629
TauI	GCSGC	1 cut(s)	387
Tru1I	TTAA	2 cut(s)	198, 575
Tru9I	TTAA	2 cut(s)	198, 575
TscAI	CASTG	2 cut(s)	431, 604
TseI	GCWGC	2 cut(s)	159, 590
TspDTI	ATGAA	5 cut(s)	236, 557, 561, 651, 765
TspRI	CASTG	2 cut(s)	431, 604
VpaK11BI	GGWCC	2 cut(s)	47, 512
XapI	RAATTY	2 cut(s)	208, 561
XcmI	CCANNNNNNNNNTGG	2 cut(s)	614, 827
XspI	CTAG	2 cut(s)	456, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.