pycom111g04520
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Forward (+)
2748998 .. 2751085
2088 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g04520.3

Sequence Viewer

Length: 1170 bp
ATGGGTCGGTCACCGTGCTGTGACAAGGTGGGTTTGAAGAAAGGTCCTTGGACTCCAGAAGAAGACCAGAAGCTCTTGGCTTACATTGAAGAACACGGCCATGGCAGTTGGCGTGCACTCCCAACAAAAGCTGGTCTTCAGAGATGTGGAAAAAGCTGTAGGCTTAGATGGACTAACTATCTCAGACCTGATATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAACAAACCATAATTCAACTCCATGCCCTATTAGGGAACAGGTGGTCGGCCATAGCAACTCACTTGCCAAAGAGAACAGACAATGAGATAAAGAACTACTGGAATACGCATCTTAAGAAGAGGCTAGCCAAAATGGGCATCGACCCCGTCACGCACAAGCCAAAGAAGGACAACCTACTCTCTAGCGCCGACGGTCAATCCAAGAACGCCTCCAATCTCAGTCACATGGCTCAGTGGGAGAGCGCCCGGCTTGAAGCCGAGGCCCGCCTAGTCAGAGAATCAAAGCTCCGCTCCCACAGCTCCTCATTACTCCACCAGCTCACCACCACAAACCCTAATACCTACGTTCCGGTGAATTCTTCGTCTTCGGGTTCGACTTCAGCACAGCTTCAGCTCAAGTGGCCGTCATCAAAACATTCTCATAATAATGTTGATCTCGAGTCTCCGACATCTACGCTCACTTATAATTCCGATCAGATTAACTTTAATAACGCATCGTCCTCCGCAATGGGGGCCGCGATTATGCAGCCGGCGATGATCGAGTTTGTTGGGAGTTCAGGTTCTTCTGAGACCAAGGAAGAAGGTGGAGATAACGAACAAGATTGGAAGTCCCATTTATCTTTTACTCCATTAGGGTTAGTTCATGATCATCATCAGAACATCACAATGTCCATGGAAGCTGCGGGTGCATGGACCGCTAATGATCATCAAGTTGGCAATGTGGCTGGTGACATGGAAGCAGCTGATCAAGAAGGTTTCACTAATCTCTTGCTTAATAATTCGGATGAGGTGCAGAGCTTGTCAGACGGGGATCGTGGAGTGGATTCTGATAACGGTGGTGGAAGCGGAAGTGGAAGCGGTAGTGACTACTACGAAGATAATAAGCATTACTGGAATAGTATTCTCAATTTAGTGAACTCTTCTCCCACTGAATCTCCAATGTTTTGA

Protein Analysis

390

Amino Acids

42.82

Weight (kDa)

6.18

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000583)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 687
AccBSI CCGCTC 1 cut(s) 513
AccII CGCG 1 cut(s) 740
AciI CCGC 8 cut(s) 487, 511, 726, 738, 905, 918, 1068, 1080
AclWI GGATC 1 cut(s) 1041
AcoI YGGCCR 3 cut(s) 97, 270, 623
AcsI RAATTY 1 cut(s) 577
AcuI CTGAAG 3 cut(s) 122, 585, 596
AfiI CCNNNNNNNGG 2 cut(s) 255, 732
AflII CTTAAG 1 cut(s) 335
AgsI TTSAA 4 cut(s) 37, 89, 239, 476
AloI GAACNNNNNNTCC 2 cut(s) 766, 798
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 2 cut(s) 669, 785
Alw44I GTGCAC 1 cut(s) 114
AlwI GGATC 1 cut(s) 1041
Ama87I CYCGRG 1 cut(s) 659
AoxI GGCC 5 cut(s) 97, 270, 483, 623, 735
ApaLI GTGCAC 1 cut(s) 114
ApeKI GCWGC 3 cut(s) 748, 902, 962
ApoI RAATTY 1 cut(s) 577
AspLEI GCGC 2 cut(s) 410, 467
AspS9I GGNCC 4 cut(s) 44, 484, 735, 915
AsuC2I CCSGG 1 cut(s) 469
AsuHPI GGTGA 4 cut(s) 3, 535, 586, 962
AsuNHI GCTAGC 1 cut(s) 346
AvaI CYCGRG 1 cut(s) 659
AvaII GGWCC 2 cut(s) 44, 915
BaeGI GKGCMC 1 cut(s) 118
BbsI GAAGAC 3 cut(s) 69, 128, 579
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 760, 889, 974
BccI CCATC 1 cut(s) 162
BceAI ACGGC 2 cut(s) 112, 610
BclI TGATCA 3 cut(s) 868, 925, 967
BcnI CCSGG 1 cut(s) 469
BcoDI GTCTC 2 cut(s) 669, 785
BfaI CTAG 3 cut(s) 347, 405, 491
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 2 cut(s) 411, 468
BfrI CTTAAG 1 cut(s) 335
BisI GCNGC 4 cut(s) 738, 749, 903, 963
BlsI GCNGC 4 cut(s) 739, 750, 904, 964
Bme1390I CCNGG 1 cut(s) 469
Bme18I GGWCC 2 cut(s) 44, 915
BmeT110I CYCGRG 1 cut(s) 659
BmgT120I GGNCC 4 cut(s) 44, 484, 735, 915
BmiI GGNNCC 1 cut(s) 736
BmrFI CCNGG 1 cut(s) 469
BmsI GCATC 3 cut(s) 340, 369, 725
BmtI GCTAGC 1 cut(s) 350
BpiI GAAGAC 3 cut(s) 69, 128, 579
BpmI CTGGAG 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 469
BsaBI GATNNNNATC 1 cut(s) 873
BsaI GGTCTC 1 cut(s) 785
BsaJI CCNNGG 5 cut(s) 47, 100, 480, 795, 894
BsaWI WCCGGW 1 cut(s) 571
BsaXI ACNNNNNCTCC 3 cut(s) 766, 796, 1141
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 732
Bse118I RCCGGY 1 cut(s) 751
Bse1I ACTGG 2 cut(s) 326, 1118
Bse3DI GCAATG 2 cut(s) 735, 946
Bse8I GATNNNNATC 1 cut(s) 873
BseDI CCNNGG 5 cut(s) 47, 100, 480, 795, 894
BseGI GGATG 1 cut(s) 1012
BseJI GATNNNNATC 1 cut(s) 873
BseLI CCNNNNNNNGG 2 cut(s) 255, 732
BseMI GCAATG 2 cut(s) 735, 946
BseMII CTCAG 4 cut(s) 196, 454, 467, 780
BseNI ACTGG 2 cut(s) 326, 1118
BseRI GAGGAG 1 cut(s) 514
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 3 cut(s) 760, 889, 974
BsgI GTGCAG 1 cut(s) 1034
Bsh1236I CGCG 1 cut(s) 740
BshFI GGCC 5 cut(s) 99, 272, 485, 625, 737
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 659
BsiSI CCGG 3 cut(s) 469, 572, 752
BslFI GGGAC 1 cut(s) 817
BslI CCNNNNNNNGG 2 cut(s) 255, 732
BsmAI GTCTC 2 cut(s) 669, 785
BsmFI GGGAC 1 cut(s) 817
BsnI GGCC 5 cut(s) 99, 272, 485, 625, 737
Bso31I GGTCTC 1 cut(s) 785
BsoBI CYCGRG 1 cut(s) 659
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 7 cut(s) 655, 694, 759, 868, 925, 967, 1033
Bsp19I CCATGG 2 cut(s) 100, 894
BspACI CCGC 8 cut(s) 487, 511, 726, 738, 905, 918, 1068, 1080
BspANI GGCC 5 cut(s) 99, 272, 485, 625, 737
BspCNI CTCAG 4 cut(s) 195, 453, 466, 781
BspFNI CGCG 1 cut(s) 740
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 1 cut(s) 736
BspOI GCTAGC 1 cut(s) 350
BspPI GGATC 1 cut(s) 1041
BspTI CTTAAG 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 785
BsrBI CCGCTC 1 cut(s) 513
BsrDI GCAATG 2 cut(s) 735, 946
BsrFI RCCGGY 1 cut(s) 751
BsrI ACTGG 2 cut(s) 326, 1118
BssAI RCCGGY 1 cut(s) 751
BssECI CCNNGG 5 cut(s) 47, 100, 480, 795, 894
BssMI GATC 7 cut(s) 655, 694, 759, 868, 925, 967, 1033
BssT1I CCWWGG 4 cut(s) 47, 100, 795, 894
Bst4CI ACNGT 3 cut(s) 15, 416, 1058
Bst6I CTCTTC 2 cut(s) 335, 1147
BstAFI CTTAAG 1 cut(s) 335
BstC8I GCNNGC 4 cut(s) 114, 348, 487, 753
BstDEI CTNAG 5 cut(s) 164, 182, 440, 453, 789
BstDSI CCRYGG 2 cut(s) 100, 894
BstEII GGTNACC 1 cut(s) 9
BstF5I GGATG 1 cut(s) 1012
BstFNI CGCG 1 cut(s) 740
BstH2I RGCGCY 2 cut(s) 411, 468
BstHHI GCGC 2 cut(s) 410, 467
BstKTI GATC 7 cut(s) 658, 697, 762, 871, 928, 970, 1036
BstMAI GTCTC 2 cut(s) 669, 785
BstMBI GATC 7 cut(s) 655, 694, 759, 868, 925, 967, 1033
BstMWI GCNNNNNNNGC 5 cut(s) 519, 622, 734, 908, 917
BstPI GGTNACC 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 467
BstSFI CTRYAG 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 118
BstUI CGCG 1 cut(s) 740
BstV1I GCAGC 3 cut(s) 760, 889, 974
BstV2I GAAGAC 3 cut(s) 69, 128, 579
BsuRI GGCC 5 cut(s) 99, 272, 485, 625, 737
BtgI CCRYGG 2 cut(s) 100, 894
BtgZI GCGATG 1 cut(s) 770
BtsCI GGATG 1 cut(s) 1012
BtsIMutI CAGTG 2 cut(s) 461, 1149
Cac8I GCNNGC 4 cut(s) 114, 348, 487, 753
CciI TCATGA 1 cut(s) 865
CfoI GCGC 2 cut(s) 410, 467
Cfr10I RCCGGY 1 cut(s) 751
Cfr13I GGNCC 4 cut(s) 44, 484, 735, 915
CviAII CATG 7 cut(s) 101, 245, 448, 866, 895, 912, 955
DdeI CTNAG 5 cut(s) 164, 182, 440, 453, 789
DpnI GATC 7 cut(s) 657, 696, 761, 870, 927, 969, 1035
DpnII GATC 7 cut(s) 655, 694, 759, 868, 925, 967, 1033
EaeI YGGCCR 3 cut(s) 97, 270, 623
Eam1104I CTCTTC 2 cut(s) 335, 1147
EarI CTCTTC 2 cut(s) 335, 1147
Eco130I CCWWGG 4 cut(s) 47, 100, 795, 894
Eco31I GGTCTC 1 cut(s) 785
Eco47I GGWCC 2 cut(s) 44, 915
Eco57I CTGAAG 3 cut(s) 122, 585, 596
Eco88I CYCGRG 1 cut(s) 659
Eco91I GGTNACC 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 44
EcoO65I GGTNACC 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 577
EcoT14I CCWWGG 4 cut(s) 47, 100, 795, 894
ErhI CCWWGG 4 cut(s) 47, 100, 795, 894
FaeI CATG 7 cut(s) 104, 248, 451, 869, 898, 915, 958
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FaqI GGGAC 1 cut(s) 817
FatI CATG 7 cut(s) 100, 244, 447, 865, 894, 911, 954
FauI CCCGC 2 cut(s) 494, 898
FbaI TGATCA 3 cut(s) 868, 925, 967
Fnu4HI GCNGC 4 cut(s) 738, 749, 903, 963
FokI GGATG 1 cut(s) 1019
Fsp4HI GCNGC 4 cut(s) 738, 749, 903, 963
FspBI CTAG 3 cut(s) 347, 405, 491
GlaI GCGC 2 cut(s) 409, 466
GluI GCNGC 4 cut(s) 738, 749, 903, 963
GsuI CTGGAG 1 cut(s) 39
HaeII RGCGCY 2 cut(s) 411, 468
HaeIII GGCC 5 cut(s) 99, 272, 485, 625, 737
HapII CCGG 3 cut(s) 469, 572, 752
HhaI GCGC 2 cut(s) 410, 467
Hin1II CATG 7 cut(s) 104, 248, 451, 869, 898, 915, 958
Hin6I GCGC 2 cut(s) 408, 465
HinP1I GCGC 2 cut(s) 408, 465
HinfI GANTC 5 cut(s) 52, 500, 662, 1046, 1154
HpaII CCGG 3 cut(s) 469, 572, 752
HphI GGTGA 4 cut(s) 3, 535, 586, 962
Hpy166II GTNNAC 2 cut(s) 116, 1138
Hpy188III TCNNGA 4 cut(s) 56, 659, 866, 971
Hpy8I GTNNAC 2 cut(s) 116, 1138
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 3 cut(s) 382, 797, 968
HpyCH4III ACNGT 3 cut(s) 15, 416, 1058
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 5 cut(s) 116, 217, 748, 911, 1015
HpyF10VI GCNNNNNNNGC 5 cut(s) 519, 622, 734, 908, 917
HpyF3I CTNAG 5 cut(s) 164, 182, 440, 453, 789
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 7 cut(s) 104, 248, 451, 869, 898, 915, 958
HspAI GCGC 2 cut(s) 408, 465
KroI GCCGGC 1 cut(s) 751
KroNI GCCGGC 1 cut(s) 753
Ksp22I TGATCA 3 cut(s) 868, 925, 967
Kzo9I GATC 7 cut(s) 655, 694, 759, 868, 925, 967, 1033
LmnI GCTCC 3 cut(s) 513, 518, 527
Lsp1109I GCAGC 3 cut(s) 760, 889, 974
LweI GCATC 3 cut(s) 340, 369, 725
MaeI CTAG 3 cut(s) 347, 405, 491
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 6 cut(s) 9, 20, 370, 443, 950, 1085
MalI GATC 7 cut(s) 657, 696, 761, 870, 927, 969, 1035
MbiI CCGCTC 1 cut(s) 513
MboI GATC 7 cut(s) 655, 694, 759, 868, 925, 967, 1033
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 5 cut(s) 234, 577, 688, 1000, 1129
MlyI GAGTC 2 cut(s) 46, 671
MmeI TCCRAC 1 cut(s) 692
MnlI CCTC 7 cut(s) 192, 336, 442, 475, 535, 733, 1003
MroNI GCCGGC 1 cut(s) 751
MseI TTAA 5 cut(s) 195, 336, 702, 708, 996
MslI CAYNNNNRTG 3 cut(s) 99, 648, 887
MspA1I CMGCKG 1 cut(s) 965
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 3 cut(s) 469, 572, 752
MspR9I CCNGG 1 cut(s) 469
MvnI CGCG 1 cut(s) 740
MwoI GCNNNNNNNGC 5 cut(s) 519, 622, 734, 908, 917
NaeI GCCGGC 1 cut(s) 753
NciI CCSGG 1 cut(s) 469
NcoI CCATGG 2 cut(s) 100, 894
NdeII GATC 7 cut(s) 655, 694, 759, 868, 925, 967, 1033
NgoMIV GCCGGC 1 cut(s) 751
NheI GCTAGC 1 cut(s) 346
NlaIII CATG 7 cut(s) 104, 248, 451, 869, 898, 915, 958
NlaIV GGNNCC 1 cut(s) 736
NmeAIII GCCGAG 1 cut(s) 505
NmuCI GTSAC 6 cut(s) 9, 20, 370, 443, 950, 1085
PaeR7I CTCGAG 1 cut(s) 659
PagI TCATGA 1 cut(s) 865
PdiI GCCGGC 1 cut(s) 753
PfeI GAWTC 3 cut(s) 500, 1046, 1154
PflFI GACNNNGTC 1 cut(s) 368
PkrI GCNGC 4 cut(s) 739, 750, 904, 964
PleI GAGTC 2 cut(s) 46, 670
PpsI GAGTC 2 cut(s) 46, 670
PpuMI RGGWCCY 1 cut(s) 44
PsiI TTATAA 1 cut(s) 687
Psp5II RGGWCCY 1 cut(s) 44
PspEI GGTNACC 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 736
PspPI GGNCC 4 cut(s) 44, 484, 735, 915
PspPPI RGGWCCY 1 cut(s) 44
PsyI GACNNNGTC 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 965
RseI CAYNNNNRTG 3 cut(s) 99, 648, 887
SaqAI TTAA 5 cut(s) 195, 336, 702, 708, 996
SatI GCNGC 4 cut(s) 738, 749, 903, 963
Sau3AI GATC 7 cut(s) 655, 694, 759, 868, 925, 967, 1033
Sau96I GGNCC 4 cut(s) 44, 484, 735, 915
SchI GAGTC 2 cut(s) 46, 671
ScrFI CCNGG 1 cut(s) 469
SduI GDGCHC 1 cut(s) 118
SfaNI GCATC 3 cut(s) 340, 369, 725
SfcI CTRYAG 1 cut(s) 157
Sfr274I CTCGAG 1 cut(s) 659
SinI GGWCC 2 cut(s) 44, 915
SlaI CTCGAG 1 cut(s) 659
SmiMI CAYNNNNRTG 3 cut(s) 99, 648, 887
SmlI CTYRAG 3 cut(s) 335, 617, 659
SmoI CTYRAG 3 cut(s) 335, 617, 659
Sse9I AATT 5 cut(s) 234, 577, 688, 1000, 1129
SsiI CCGC 8 cut(s) 487, 511, 726, 738, 905, 918, 1068, 1080
SspMI CTAG 3 cut(s) 347, 405, 491
StyD4I CCNGG 1 cut(s) 467
StyI CCWWGG 4 cut(s) 47, 100, 795, 894
TaaI ACNGT 3 cut(s) 15, 416, 1058
TaiI ACGT 1 cut(s) 570
TaqI TCGA 4 cut(s) 363, 596, 660, 762
TasI AATT 5 cut(s) 234, 577, 688, 1000, 1129
TauI GCSGC 1 cut(s) 740
TfiI GAWTC 3 cut(s) 500, 1046, 1154
Tru1I TTAA 5 cut(s) 195, 336, 702, 708, 996
Tru9I TTAA 5 cut(s) 195, 336, 702, 708, 996
TscAI CASTG 2 cut(s) 461, 1156
TseFI GTSAC 6 cut(s) 9, 20, 370, 443, 950, 1085
TseI GCWGC 3 cut(s) 748, 902, 962
Tsp45I GTSAC 6 cut(s) 9, 20, 370, 443, 950, 1085
TspDTI ATGAA 1 cut(s) 854
TspRI CASTG 2 cut(s) 461, 1156
Tth111I GACNNNGTC 1 cut(s) 368
Vha464I CTTAAG 1 cut(s) 335
VneI GTGCAC 1 cut(s) 114
VpaK11BI GGWCC 2 cut(s) 44, 915
XapI RAATTY 1 cut(s) 577
XhoI CTCGAG 1 cut(s) 659
XspI CTAG 3 cut(s) 347, 405, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.