Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Reverse (-)

64036988 .. 64037653

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTGTATTAGGTGGTCAGCCATAGCTGCGAACTTACCAAGGAGAACAGACAATGAGATAAAGAACTACTGGAACACACATCTAAAGAAGAGGTTAGCCAAGATAGGGTTTGATCCTGTAACCCACAGGCCCAAGACCTCCATCCTTGGCTCTGCTAATGGCGACCCGAAGAACCTCTCAAACCTCAACCACATAGCTCAGTGGGAAAGTGCTAGGCTTCAAGCAGAAGCTAGATTTGTGAGACAGTCAAAACTACTCAAACCAGCATCACCAGCACCACAGTGCCTTGACTTCAATTTAAGAATATGGGAAACCCTAATGATGTCAAAGTCATTAGCTGCAGGCGGTGGAGGTGGCGACGAAGCCGGTGGTGTTGGTGGTGCAACTAATGTTGTTCAAGAGGTTGGTTCATTCGGTAATTTTGACGGTATACTTGGTAATAATGGTAGACAGTTTGAGGCTCCAAAATTAGCCATATCAGCAGCTCCGGATTTCAATGAAGTTTCAGAGGAGAGTGGTACTGATGAATACGGTGACCCATTTGAGACACAACTACCCCAGGAGAGCTACAATAATACCTGGTTTGATGTCGTGGATGCTTGGACTTTGGAACAATGTAATGATATCAGAGCAGACTATCAAAATGTGATCATGAGCGGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

221

Amino Acids

24.23

Weight (kDa)

5.14

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	4 - 28	1.9e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	657
AccI	GTMKAC	2 cut(s)	430, 448
AccIII	TCCGGA	1 cut(s)	487
AciI	CCGC	2 cut(s)	345, 657
AclWI	GGATC	1 cut(s)	107
AfaI	GTAC	1 cut(s)	520
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	4 cut(s)	221, 295, 398, 496
AjnI	CCWGG	2 cut(s)	558, 578
AleI	CACNNNNGTG	1 cut(s)	280
AluBI	AGCT	6 cut(s)	26, 197, 230, 338, 485, 567
AluI	AGCT	6 cut(s)	26, 197, 230, 338, 485, 567
Alw26I	GTCTC	2 cut(s)	235, 539
AlwI	GGATC	1 cut(s)	107
Aor13HI	TCCGGA	1 cut(s)	487
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	3 cut(s)	26, 338, 482
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	261, 545
BbvI	GCAGC	3 cut(s)	13, 325, 494
BccI	CCATC	1 cut(s)	149
BciT130I	CCWGG	2 cut(s)	560, 580
BclI	TGATCA	1 cut(s)	648
BcoDI	GTCTC	2 cut(s)	235, 539
BfaI	CTAG	2 cut(s)	213, 231
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	3 cut(s)	27, 339, 483
BlsI	GCNGC	3 cut(s)	28, 340, 484
Bme1390I	CCNGG	2 cut(s)	560, 580
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	2 cut(s)	560, 580
BmsI	GCATC	2 cut(s)	275, 586
BsaJI	CCNNGG	3 cut(s)	38, 145, 558
BsaWI	WCCGGW	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	74
BseAI	TCCGGA	1 cut(s)	487
BseBI	CCWGG	2 cut(s)	560, 580
BseDI	CCNNGG	3 cut(s)	38, 145, 558
BseGI	GGATG	2 cut(s)	141, 601
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	74
BseRI	GAGGAG	1 cut(s)	524
BseXI	GCAGC	3 cut(s)	13, 325, 494
BshFI	GGCC	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	366, 488
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	2 cut(s)	235, 539
BsnI	GGCC	1 cut(s)	130
Bsp13I	TCCGGA	1 cut(s)	487
Bsp143I	GATC	2 cut(s)	112, 648
BspACI	CCGC	2 cut(s)	345, 657
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	211
BspEI	TCCGGA	1 cut(s)	487
BspHI	TCATGA	1 cut(s)	651
BspLI	GGNNCC	1 cut(s)	462
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	657
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	3 cut(s)	38, 145, 558
BssMI	GATC	2 cut(s)	112, 648
BssNAI	GTATAC	1 cut(s)	431
BssT1I	CCWWGG	2 cut(s)	38, 145
Bst1107I	GTATAC	1 cut(s)	431
Bst2UI	CCWGG	2 cut(s)	560, 580
Bst4CI	ACNGT	5 cut(s)	246, 282, 428, 453, 533
Bst6I	CTCTTC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	1 cut(s)	198
BstEII	GGTNACC	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	141, 601
BstKTI	GATC	2 cut(s)	115, 651
BstMAI	GTCTC	2 cut(s)	235, 539
BstMBI	GATC	2 cut(s)	112, 648
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 272, 479
BstNI	CCWGG	2 cut(s)	560, 580
BstPI	GGTNACC	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	558, 578
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	3 cut(s)	13, 325, 494
BstZ17I	GTATAC	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	141, 601
BtsIMutI	CAGTG	2 cut(s)	206, 287
Cac8I	GCNNGC	1 cut(s)	343
CciI	TCATGA	1 cut(s)	651
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	129
CsiI	ACCWGGT	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	519
CviAII	CATG	1 cut(s)	652
CviQI	GTAC	1 cut(s)	519
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	2 cut(s)	114, 650
DpnII	GATC	2 cut(s)	112, 648
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco130I	CCWWGG	2 cut(s)	38, 145
Eco32I	GATATC	1 cut(s)	625
Eco91I	GGTNACC	1 cut(s)	533
EcoO65I	GGTNACC	1 cut(s)	533
EcoRII	CCWGG	2 cut(s)	558, 578
EcoRV	GATATC	1 cut(s)	625
EcoT14I	CCWWGG	2 cut(s)	38, 145
ErhI	CCWWGG	2 cut(s)	38, 145
FaeI	CATG	1 cut(s)	655
FaiI	YATR	6 cut(s)	23, 194, 307, 431, 476, 653
FatI	CATG	1 cut(s)	651
FauI	CCCGC	1 cut(s)	650
FbaI	TGATCA	1 cut(s)	648
FblI	GTMKAC	2 cut(s)	430, 448
Fnu4HI	GCNGC	3 cut(s)	27, 339, 483
FokI	GGATG	2 cut(s)	128, 608
Fsp4HI	GCNGC	3 cut(s)	27, 339, 483
FspBI	CTAG	2 cut(s)	213, 231
GluI	GCNGC	3 cut(s)	27, 339, 483
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	2 cut(s)	366, 488
Hin1II	CATG	1 cut(s)	655
HpaII	CCGG	2 cut(s)	366, 488
HphI	GGTGA	2 cut(s)	261, 545
Hpy166II	GTNNAC	2 cut(s)	431, 449
Hpy188I	TCNGA	2 cut(s)	508, 629
Hpy188III	TCNNGA	3 cut(s)	398, 488, 652
Hpy8I	GTNNAC	2 cut(s)	431, 449
Hpy99I	CGWCG	1 cut(s)	362
HpyCH4III	ACNGT	5 cut(s)	246, 282, 428, 453, 533
HpyCH4V	TGCA	2 cut(s)	341, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 272, 479
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	655
Kpn2I	TCCGGA	1 cut(s)	487
Ksp22I	TGATCA	1 cut(s)	648
Kzo9I	GATC	2 cut(s)	112, 648
LmnI	GCTCC	2 cut(s)	466, 490
Lsp1109I	GCAGC	3 cut(s)	13, 325, 494
LweI	GCATC	2 cut(s)	275, 586
MabI	ACCWGGT	1 cut(s)	578
MaeI	CTAG	2 cut(s)	213, 231
MaeIII	GTNAC	2 cut(s)	118, 533
MalI	GATC	2 cut(s)	114, 650
MbiI	CCGCTC	1 cut(s)	657
MboI	GATC	2 cut(s)	112, 648
MboII	GAAGA	2 cut(s)	100, 181
MluCI	AATT	3 cut(s)	295, 418, 467
MnlI	CCTC	8 cut(s)	84, 148, 185, 194, 344, 394, 451, 502
MroI	TCCGGA	1 cut(s)	487
MseI	TTAA	1 cut(s)	299
MslI	CAYNNNNRTG	1 cut(s)	280
MspI	CCGG	2 cut(s)	366, 488
MspR9I	CCNGG	2 cut(s)	560, 580
MvaI	CCWGG	2 cut(s)	560, 580
MwoI	GCNNNNNNNGC	3 cut(s)	26, 272, 479
NdeII	GATC	2 cut(s)	112, 648
NlaIII	CATG	1 cut(s)	655
NlaIV	GGNNCC	1 cut(s)	462
NmuCI	GTSAC	1 cut(s)	533
OliI	CACNNNNGTG	1 cut(s)	280
PagI	TCATGA	1 cut(s)	651
PkrI	GCNGC	3 cut(s)	28, 340, 484
Psp6I	CCWGG	2 cut(s)	558, 578
PspEI	GGTNACC	1 cut(s)	533
PspGI	CCWGG	2 cut(s)	558, 578
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	129
PstI	CTGCAG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	3 cut(s)	27, 339, 483
Sau3AI	GATC	2 cut(s)	112, 648
Sau96I	GGNCC	1 cut(s)	129
ScrFI	CCNGG	2 cut(s)	560, 580
SexAI	ACCWGGT	1 cut(s)	578
SfaNI	GCATC	2 cut(s)	275, 586
SfcI	CTRYAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	280
Sse9I	AATT	3 cut(s)	295, 418, 467
SsiI	CCGC	2 cut(s)	345, 657
SspMI	CTAG	2 cut(s)	213, 231
StyD4I	CCNGG	2 cut(s)	558, 578
StyI	CCWWGG	2 cut(s)	38, 145
TaaI	ACNGT	5 cut(s)	246, 282, 428, 453, 533
TasI	AATT	3 cut(s)	295, 418, 467
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	2 cut(s)	206, 287
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	3 cut(s)	26, 338, 482
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	3 cut(s)	399, 513, 540
TspRI	CASTG	2 cut(s)	206, 287
XmiI	GTMKAC	2 cut(s)	430, 448
XspI	CTAG	2 cut(s)	213, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.