Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Reverse (-)

30605436 .. 30607360

Gene Structure 1925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG303000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGAAAGCAATCTCATACTGTTGCATCTCCTGGAATAAGGAGAGGTCGATGGACTCCTGAGGAGGACAAGAAGGTCTTTGCTTTCGTTCAACAACATGGCCATGGAAGCTGGCGTTCCTTCCCCCAGAAAGCTGGTCTCCAAAGATGTGGAAAGAGCTGCAGGCTAAGATGGAGAAACTATCTAAACCCTGATATTAAGAGAGGAAATTTCAGTTTGCAGGAAGACCAGACCATCATTCTACTTCATGCACTTTTGGGCAACAGGTGGTCGGCCATAGCTGCACAGTTACCAAAGAGAACAGACAATGAGATAAAGAACTACTGGAACACACATCTAAAGAAGAGGTTAGCCAAGATAGGGTTTGATCCTGTAACCCACAAGCCCAAGACCGCCATCCTAGTCTCTGCTGATGGCGGCGACCCGAAGAACCTCTCAAACCTCAGCCACATAGCTCAGTGGGAAACTGCTCGGCTTCAAGCAGAAGCTAGATTCTCCAGACAGTCAAAACTACCCATCAGCCATGACCAACCTCCTAGATTTGGACCCGTGCCTGTACCACAATGCCTTGACATGAACGAAAGAGCACGAGAAATACAGTTACTGTTAAAGTCAATATTAGCTGCAGACAGTGGTGCCCAACTAGGTGGTGGTATTGGTAGTACCGCCACCCACGTTGGGCAGGAGGTTGCTTCATTTGGTACAGTTGATGTTGAGGGCGTGCTTACTAATTGTGATCAGTTTGAGGCTCCAAGAACCAGTACATCAGTTCTGGGTTTTGATGAAGTTTTTGGGGAGTCCGGTACTAATAATGACTATGGTGAACTGTTGGAAGCATTACTACAGCACAATCATAACAGTACTGGATTTGAAGTTGGGGATGCTTGGAGTTTGGAACAACGTGCAACAGTAATGATGAGTGAGCCGGGAACAACGTACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

314

Amino Acids

34.79

Weight (kDa)

8.64

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	1.6e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 78	4.1e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 113	1.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 123	4.2e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	635
AciI	CCGC	3 cut(s)	393, 417, 666
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	2 cut(s)	100, 273
AcsI	RAATTY	1 cut(s)	208
AfaI	GTAC	7 cut(s)	558, 664, 703, 763, 805, 862, 938
AfiI	CCNNNNNNNGG	3 cut(s)	360, 542, 678
AgsI	TTSAA	3 cut(s)	92, 479, 872
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	7 cut(s)	111, 134, 159, 281, 455, 488, 623
AluI	AGCT	7 cut(s)	111, 134, 159, 281, 455, 488, 623
Alw21I	GWGCWC	1 cut(s)	589
Alw26I	GTCTC	2 cut(s)	143, 409
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	604
AoxI	GGCC	2 cut(s)	100, 273
ApeKI	GCWGC	3 cut(s)	159, 281, 623
ApoI	RAATTY	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	545
AsuC2I	CCSGG	1 cut(s)	927
AsuHPI	GGTGA	1 cut(s)	833
AvaII	GGWCC	1 cut(s)	545
AxyI	CCTNAGG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	640
BalI	TGGCCA	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	635
BarI	GAAGNNNNNNTAC	2 cut(s)	825, 857
BauI	CACGAG	1 cut(s)	588
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	589
BbvCI	CCTCAGC	1 cut(s)	443
BbvI	GCAGC	3 cut(s)	146, 268, 610
BccI	CCATC	6 cut(s)	45, 165, 242, 404, 407, 524
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	1 cut(s)	927
BcoDI	GTCTC	2 cut(s)	143, 409
BfaI	CTAG	4 cut(s)	401, 489, 537, 644
BfmI	CTRYAG	3 cut(s)	160, 624, 842
BisI	GCNGC	4 cut(s)	160, 282, 418, 624
BlsI	GCNGC	4 cut(s)	161, 283, 419, 625
BmcAI	AGTACT	1 cut(s)	862
Bme1390I	CCNGG	2 cut(s)	33, 927
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	3 cut(s)	547, 637, 750
BmrFI	CCNGG	2 cut(s)	33, 927
BmsI	GCATC	2 cut(s)	35, 871
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	481
Bpu10I	CCTNAGC	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	927
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	800
Bsc4I	CCNNNNNNNGG	3 cut(s)	360, 542, 678
Bse1I	ACTGG	3 cut(s)	329, 759, 868
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	2 cut(s)	396, 886
BseLI	CCNNNNNNNGG	3 cut(s)	360, 542, 678
BseMII	CTCAG	3 cut(s)	51, 457, 470
BseNI	ACTGG	3 cut(s)	329, 759, 868
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	3 cut(s)	146, 268, 610
BsgI	GTGCAG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	102, 275
BshNI	GGYRCC	1 cut(s)	635
BsiHKAI	GWGCWC	1 cut(s)	589
BsiSI	CCGG	2 cut(s)	801, 926
BslI	CCNNNNNNNGG	3 cut(s)	360, 542, 678
BsmAI	GTCTC	2 cut(s)	143, 409
BsnI	GGCC	2 cut(s)	102, 275
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	589, 640
Bsp143I	GATC	2 cut(s)	367, 736
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	3 cut(s)	393, 417, 666
BspANI	GGCC	2 cut(s)	102, 275
BspCNI	CTCAG	3 cut(s)	52, 456, 469
BspLI	GGNNCC	3 cut(s)	547, 637, 750
BspMAI	CTGCAG	2 cut(s)	164, 628
BspPI	GGATC	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	143
BsrI	ACTGG	3 cut(s)	329, 759, 868
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	367, 736
BssSI	CACGAG	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	103
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	338
BstC8I	GCNNGC	3 cut(s)	113, 164, 722
BstDEI	CTNAG	4 cut(s)	60, 167, 443, 456
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	396, 886
BstKTI	GATC	2 cut(s)	370, 739
BstMAI	GTCTC	2 cut(s)	143, 409
BstMBI	GATC	2 cut(s)	367, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 281
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	31, 925
BstSFI	CTRYAG	3 cut(s)	160, 624, 842
BstSLI	GKGCMC	1 cut(s)	640
BstV1I	GCAGC	3 cut(s)	146, 268, 610
BstV2I	GAAGAC	1 cut(s)	231
BstXI	CCANNNNNNTGG	3 cut(s)	134, 149, 647
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	102, 275
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	396, 886
BtsIMutI	CAGTG	2 cut(s)	464, 637
Cac8I	GCNNGC	3 cut(s)	113, 164, 722
CaiI	CAGNNNCTG	1 cut(s)	604
Cfr13I	GGNCC	1 cut(s)	545
Csp6I	GTAC	7 cut(s)	557, 663, 702, 762, 804, 861, 937
CspCI	CAANNNNNGTGG	2 cut(s)	658, 693
CviAII	CATG	5 cut(s)	98, 104, 248, 524, 574
CviQI	GTAC	7 cut(s)	557, 663, 702, 762, 804, 861, 937
DdeI	CTNAG	4 cut(s)	60, 167, 443, 456
DpnI	GATC	2 cut(s)	369, 738
DpnII	GATC	2 cut(s)	367, 736
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EaeI	YGGCCR	2 cut(s)	100, 273
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	545
Eco81I	CCTNAGG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	5 cut(s)	101, 107, 251, 527, 577
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	5 cut(s)	97, 103, 247, 523, 573
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	4 cut(s)	160, 282, 418, 624
FokI	GGATG	2 cut(s)	383, 893
Fsp4HI	GCNGC	4 cut(s)	160, 282, 418, 624
FspBI	CTAG	4 cut(s)	401, 489, 537, 644
GluI	GCNGC	4 cut(s)	160, 282, 418, 624
GsuI	CTGGAG	1 cut(s)	481
HaeIII	GGCC	2 cut(s)	102, 275
HapII	CCGG	2 cut(s)	801, 926
Hin1II	CATG	5 cut(s)	101, 107, 251, 527, 577
HinfI	GANTC	3 cut(s)	55, 492, 797
HpaII	CCGG	2 cut(s)	801, 926
HphI	GGTGA	1 cut(s)	833
Hpy166II	GTNNAC	1 cut(s)	824
Hpy188III	TCNNGA	2 cut(s)	59, 498
Hpy8I	GTNNAC	1 cut(s)	824
HpyAV	CCTTC	2 cut(s)	67, 130
HpyCH4IV	ACGT	3 cut(s)	675, 901, 935
HpyCH4V	TGCA	7 cut(s)	26, 162, 220, 251, 284, 626, 905
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 281
HpyF3I	CTNAG	4 cut(s)	60, 167, 443, 456
HpySE526I	ACGT	3 cut(s)	675, 901, 935
Hsp92II	CATG	5 cut(s)	101, 107, 251, 527, 577
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	2 cut(s)	367, 736
LmnI	GCTCC	1 cut(s)	754
Lsp1109I	GCAGC	3 cut(s)	146, 268, 610
LweI	GCATC	2 cut(s)	35, 871
MaeI	CTAG	4 cut(s)	401, 489, 537, 644
MaeII	ACGT	3 cut(s)	675, 901, 935
MaeIII	GTNAC	3 cut(s)	288, 373, 600
MalI	GATC	2 cut(s)	369, 738
MboI	GATC	2 cut(s)	367, 736
MboII	GAAGA	3 cut(s)	236, 355, 439
MhlI	GDGCHC	2 cut(s)	589, 640
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	2 cut(s)	208, 730
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	2 cut(s)	49, 806
MmeI	TCCRAC	1 cut(s)	810
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	2 cut(s)	198, 608
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	2 cut(s)	801, 926
MspR9I	CCNGG	2 cut(s)	33, 927
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	108, 281
NciI	CCSGG	1 cut(s)	927
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	367, 736
NlaIII	CATG	5 cut(s)	101, 107, 251, 527, 577
NlaIV	GGNNCC	3 cut(s)	547, 637, 750
NmeAIII	GCCGAG	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	492
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	4 cut(s)	161, 283, 419, 625
PleI	GAGTC	2 cut(s)	49, 805
PpsI	GAGTC	2 cut(s)	49, 805
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	3 cut(s)	547, 637, 750
PspPI	GGNCC	1 cut(s)	545
PstI	CTGCAG	2 cut(s)	164, 628
PstNI	CAGNNNCTG	1 cut(s)	604
RsaI	GTAC	7 cut(s)	558, 664, 703, 763, 805, 862, 938
RsaNI	GTAC	7 cut(s)	557, 663, 702, 762, 804, 861, 937
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	198, 608
SatI	GCNGC	4 cut(s)	160, 282, 418, 624
Sau3AI	GATC	2 cut(s)	367, 736
Sau96I	GGNCC	1 cut(s)	545
ScaI	AGTACT	1 cut(s)	862
SchI	GAGTC	2 cut(s)	49, 806
ScrFI	CCNGG	2 cut(s)	33, 927
SduI	GDGCHC	2 cut(s)	589, 640
SfaNI	GCATC	2 cut(s)	35, 871
SfcI	CTRYAG	3 cut(s)	160, 624, 842
SinI	GGWCC	1 cut(s)	545
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	2 cut(s)	208, 730
SsiI	CCGC	3 cut(s)	393, 417, 666
SspI	AATATT	1 cut(s)	618
SspMI	CTAG	4 cut(s)	401, 489, 537, 644
StyD4I	CCNGG	2 cut(s)	31, 925
StyI	CCWWGG	1 cut(s)	103
TaiI	ACGT	3 cut(s)	678, 904, 938
TaqI	TCGA	1 cut(s)	49
TasI	AATT	2 cut(s)	208, 730
TatI	WGTACW	2 cut(s)	761, 860
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	2 cut(s)	198, 608
Tru9I	TTAA	2 cut(s)	198, 608
TscAI	CASTG	2 cut(s)	464, 637
TseI	GCWGC	3 cut(s)	159, 281, 623
TspDTI	ATGAA	4 cut(s)	236, 590, 684, 798
TspRI	CASTG	2 cut(s)	464, 637
VpaK11BI	GGWCC	1 cut(s)	545
XapI	RAATTY	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	647
XspI	CTAG	4 cut(s)	401, 489, 537, 644
ZrmI	AGTACT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.