Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014780.1

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Forward (+)

18681 .. 21335

Gene Structure 2655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014780.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggaaaagcaatctcatactgttgcatttcctggaataaggagaggtgcatggactcctgaggaggacaagaagctccttgctttcgttcaacaacatggccatggaagctggcgttccttaccccagaaagctgctgctaatggagttatacatgcatgtaggtggtcgaccatagctgcacagttaccaaagagaacagacaatgagataaagaactactggaacacacatctaaagaagaggttagccaagatagggtttgatcctgtaacccacaagcccaagaccgccatcctcgcctctgctgatggtggcgacccgaagaacctctcaaacctcagccacatagctcagtgggaaactgctcggcttcaagcagaagctagattctccggacagtcaaaactactcatcagtcatgaccaacctcctagatttggacccgtgcctgtaccacaatgccttgacatgaatgaaagagcacgagaaattcgattactgttaaagtcaatattagctgcagacagtggtgcccaattaggtggtggtattggtactacagccacccacgttgggcaggaggttggttcatttggtaaagttgatgttgagggcttgcttactaattgtgatcagtttgaggctccaagaaccattcttggtctgcggaggcagagctccattgaagaagtgaaggaggcctgcgacaacgtttcttcgtcgtggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

243

Amino Acids

26.67

Weight (kDa)

9.23

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	170
AccIII	TCCGGA	1 cut(s)	395
AciI	CCGC	2 cut(s)	291, 670
AclI	AACGTT	1 cut(s)	714
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	492
AfaI	GTAC	2 cut(s)	456, 559
AfiI	CCNNNNNNNGG	3 cut(s)	258, 440, 576
AgsI	TTSAA	3 cut(s)	92, 377, 689
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	8 cut(s)	76, 111, 134, 179, 353, 386, 521, 681
AluI	AGCT	8 cut(s)	76, 111, 134, 179, 353, 386, 521, 681
Alw21I	GWGCWC	2 cut(s)	487, 683
AlwI	GGATC	1 cut(s)	260
Aor13HI	TCCGGA	1 cut(s)	395
AoxI	GGCC	2 cut(s)	100, 702
ApeKI	GCWGC	4 cut(s)	134, 137, 179, 521
ApoI	RAATTY	1 cut(s)	492
AspS9I	GGNCC	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	443
AxyI	CCTNAGG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	538
BalI	TGGCCA	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	683
BauI	CACGAG	1 cut(s)	486
Bbv12I	GWGCWC	2 cut(s)	487, 683
BbvCI	CCTCAGC	1 cut(s)	341
BbvI	GCAGC	4 cut(s)	121, 124, 166, 508
BccI	CCATC	2 cut(s)	302, 305
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	634
BfaI	CTAG	2 cut(s)	387, 435
BfmI	CTRYAG	2 cut(s)	522, 561
BisI	GCNGC	4 cut(s)	135, 138, 180, 522
BlsI	GCNGC	4 cut(s)	136, 139, 181, 523
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	3 cut(s)	445, 535, 648
BmrFI	CCNGG	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 440, 576
Bse1I	ACTGG	1 cut(s)	227
Bse21I	CCTNAGG	1 cut(s)	60
BseAI	TCCGGA	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	3 cut(s)	258, 440, 576
BseMII	CTCAG	3 cut(s)	51, 355, 368
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	538
BseXI	GCAGC	4 cut(s)	121, 124, 166, 508
BsgI	GTGCAG	1 cut(s)	165
BshFI	GGCC	2 cut(s)	102, 704
BshNI	GGYRCC	1 cut(s)	533
BsiHKAI	GWGCWC	2 cut(s)	487, 683
BsiSI	CCGG	1 cut(s)	396
BslI	CCNNNNNNNGG	3 cut(s)	258, 440, 576
BsnI	GGCC	2 cut(s)	102, 704
Bsp1286I	GDGCHC	3 cut(s)	487, 538, 683
Bsp13I	TCCGGA	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	265, 634
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	2 cut(s)	291, 670
BspANI	GGCC	2 cut(s)	102, 704
BspCNI	CTCAG	3 cut(s)	52, 354, 367
BspEI	TCCGGA	1 cut(s)	395
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	3 cut(s)	445, 535, 648
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	1 cut(s)	260
BspT107I	GGYRCC	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	265, 634
BssSI	CACGAG	1 cut(s)	486
BssT1I	CCWWGG	1 cut(s)	103
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	5 cut(s)	22, 186, 402, 504, 530
Bst6I	CTCTTC	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	113, 620, 706
BstDEI	CTNAG	3 cut(s)	60, 341, 354
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	294
BstKTI	GATC	2 cut(s)	268, 637
BstMBI	GATC	2 cut(s)	265, 634
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 299
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	2 cut(s)	158, 162
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	2 cut(s)	522, 561
BstSLI	GKGCMC	1 cut(s)	538
BstV1I	GCAGC	4 cut(s)	121, 124, 166, 508
BstXI	CCANNNNNNTGG	1 cut(s)	545
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	102, 704
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	362, 535
Cac8I	GCNNGC	3 cut(s)	113, 620, 706
CciI	TCATGA	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	2 cut(s)	455, 558
CspCI	CAANNNNNGTGG	2 cut(s)	556, 591
CviAII	CATG	7 cut(s)	51, 98, 104, 155, 159, 422, 472
CviQI	GTAC	2 cut(s)	455, 558
DdeI	CTNAG	3 cut(s)	60, 341, 354
DpnI	GATC	2 cut(s)	267, 636
DpnII	GATC	2 cut(s)	265, 634
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	681
Eco130I	CCWWGG	1 cut(s)	103
Eco147I	AGGCCT	1 cut(s)	704
Eco24I	GRGCYC	1 cut(s)	683
Eco47I	GGWCC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	681
Eco81I	CCTNAGG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	681
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	683
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	7 cut(s)	54, 101, 107, 158, 162, 425, 475
FatI	CATG	7 cut(s)	50, 97, 103, 154, 158, 421, 471
FbaI	TGATCA	1 cut(s)	634
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	4 cut(s)	135, 138, 180, 522
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	683
Fsp4HI	GCNGC	4 cut(s)	135, 138, 180, 522
FspBI	CTAG	2 cut(s)	387, 435
GluI	GCNGC	4 cut(s)	135, 138, 180, 522
HaeIII	GGCC	2 cut(s)	102, 704
HapII	CCGG	1 cut(s)	396
Hin1II	CATG	7 cut(s)	54, 101, 107, 158, 162, 425, 475
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HinfI	GANTC	2 cut(s)	55, 390
HpaII	CCGG	1 cut(s)	396
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188III	TCNNGA	3 cut(s)	59, 396, 422
Hpy8I	GTNNAC	1 cut(s)	171
Hpy99I	CGWCG	1 cut(s)	727
HpyAV	CCTTC	1 cut(s)	691
HpyCH4III	ACNGT	5 cut(s)	22, 186, 402, 504, 530
HpyCH4IV	ACGT	2 cut(s)	573, 714
HpyCH4V	TGCA	5 cut(s)	26, 50, 158, 182, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 299
HpyF3I	CTNAG	3 cut(s)	60, 341, 354
HpySE526I	ACGT	2 cut(s)	573, 714
Hsp92II	CATG	7 cut(s)	54, 101, 107, 158, 162, 425, 475
Kpn2I	TCCGGA	1 cut(s)	395
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	2 cut(s)	265, 634
LmnI	GCTCC	3 cut(s)	81, 652, 686
Lsp1109I	GCAGC	4 cut(s)	121, 124, 166, 508
MaeI	CTAG	2 cut(s)	387, 435
MaeII	ACGT	2 cut(s)	573, 714
MaeIII	GTNAC	2 cut(s)	186, 271
MalI	GATC	2 cut(s)	267, 636
MboI	GATC	2 cut(s)	265, 634
MboII	GAAGA	4 cut(s)	253, 337, 701, 711
MhlI	GDGCHC	3 cut(s)	487, 538, 683
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	3 cut(s)	492, 539, 628
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	49
Mox20I	TGGCCA	1 cut(s)	102
Mph1103I	ATGCAT	1 cut(s)	160
MroI	TCCGGA	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	506
MslI	CAYNNNNRTG	2 cut(s)	102, 163
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	108, 299
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	265, 634
NlaIII	CATG	7 cut(s)	54, 101, 107, 158, 162, 425, 475
NlaIV	GGNNCC	3 cut(s)	445, 535, 648
NmeAIII	GCCGAG	1 cut(s)	349
NsiI	ATGCAT	1 cut(s)	160
NspI	RCATGY	2 cut(s)	158, 162
PagI	TCATGA	1 cut(s)	421
PceI	AGGCCT	1 cut(s)	704
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PfeI	GAWTC	1 cut(s)	390
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	4 cut(s)	136, 139, 181, 523
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	683
Psp1406I	AACGTT	1 cut(s)	714
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	3 cut(s)	445, 535, 648
PspPI	GGNCC	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	526
RsaI	GTAC	2 cut(s)	456, 559
RsaNI	GTAC	2 cut(s)	455, 558
RseI	CAYNNNNRTG	2 cut(s)	102, 163
SacI	GAGCTC	1 cut(s)	683
SalI	GTCGAC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	506
SatI	GCNGC	4 cut(s)	135, 138, 180, 522
Sau3AI	GATC	2 cut(s)	265, 634
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	3 cut(s)	487, 538, 683
SfcI	CTRYAG	2 cut(s)	522, 561
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	2 cut(s)	102, 163
Sse9I	AATT	3 cut(s)	492, 539, 628
SseBI	AGGCCT	1 cut(s)	704
SsiI	CCGC	2 cut(s)	291, 670
SspI	AATATT	1 cut(s)	516
SspMI	CTAG	2 cut(s)	387, 435
SstI	GAGCTC	1 cut(s)	683
StuI	AGGCCT	1 cut(s)	704
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	5 cut(s)	22, 186, 402, 504, 530
TaiI	ACGT	2 cut(s)	576, 717
TaqI	TCGA	2 cut(s)	170, 496
TasI	AATT	3 cut(s)	492, 539, 628
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	506
Tru9I	TTAA	1 cut(s)	506
TscAI	CASTG	2 cut(s)	362, 535
TseI	GCWGC	4 cut(s)	134, 137, 179, 521
TspDTI	ATGAA	3 cut(s)	488, 492, 582
TspRI	CASTG	2 cut(s)	362, 535
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	492
XceI	RCATGY	2 cut(s)	158, 162
XcmI	CCANNNNNNNNNTGG	1 cut(s)	545
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	2 cut(s)	387, 435
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.