Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028983.1

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 659

Gene Structure 659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028983.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 659 bp

tagctgcgaacttaccaaggagaacagacaatgagataaagaactactggaacacacatctaaagaagaggttagccaagatagggtttgatcctgtaacccacaggcccaagaccgccatccttgcctctgctaatggcgacccgaagatcctctcaaacctcagccacatagctcagtgggaaagtgctaggcttcaagcagaagctagatttgtgagacagtcaaaactactcaaaccagcaccacagtgccttgacttcaatctaagaacatgggaaaccctaatgatgtcaaagtcattagctgcaggcggtggaggtggcgacgaagccggtggtgttggtcgtgcaactaatgttgttcaagaggttggttcattcggtaatttttatggtgtacttggtaataatggtagacagtttgaggctccaaaattaaccaaatcagcagctccggatttcaatggagtttcagaggagagtggtactgatgaatacggtgacctatttgagatactactaccccaggagagctacaataatactgggtttgatgtcgtggatgcttggactttggaacaatgtaatgatatcagtgcagactatcaaaatgtgatcatgagcggggggttgaaaaacccatttatgttccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

218

Amino Acids

23.9

Weight (kDa)

5.68

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	626
AccI	GTMKAC	1 cut(s)	417
AccIII	TCCGGA	1 cut(s)	456
AciI	CCGC	3 cut(s)	116, 314, 626
AclWI	GGATC	2 cut(s)	85, 144
AfaI	GTAC	2 cut(s)	401, 489
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	5 cut(s)	199, 264, 367, 465, 636
AjnI	CCWGG	1 cut(s)	527
AleI	CACNNNNGTG	1 cut(s)	249
AluBI	AGCT	6 cut(s)	4, 175, 208, 307, 454, 536
AluI	AGCT	6 cut(s)	4, 175, 208, 307, 454, 536
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	2 cut(s)	85, 144
Aor13HI	TCCGGA	1 cut(s)	456
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	3 cut(s)	4, 307, 451
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	514
BbvCI	CCTCAGC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	294, 463
BccI	CCATC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	529
BclI	TGATCA	1 cut(s)	617
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	2 cut(s)	191, 209
BfmI	CTRYAG	1 cut(s)	308
BisI	GCNGC	3 cut(s)	5, 308, 452
BlsI	GCNGC	3 cut(s)	6, 309, 453
Bme1390I	CCNGG	1 cut(s)	529
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	1 cut(s)	529
BmrI	ACTGGG	1 cut(s)	557
BmsI	GCATC	1 cut(s)	555
BmuI	ACTGGG	1 cut(s)	557
Bpu10I	CCTNAGC	1 cut(s)	163
BsaJI	CCNNGG	2 cut(s)	16, 527
BsaWI	WCCGGW	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	334
Bse1I	ACTGG	3 cut(s)	52, 552, 654
BseAI	TCCGGA	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	529
BseDI	CCNNGG	2 cut(s)	16, 527
BseGI	GGATG	2 cut(s)	119, 570
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	177, 190
BseNI	ACTGG	3 cut(s)	52, 552, 654
BseRI	GAGGAG	1 cut(s)	493
BseXI	GCAGC	2 cut(s)	294, 463
BsgI	GTGCAG	1 cut(s)	620
BshFI	GGCC	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	335, 457
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	108
Bsp13I	TCCGGA	1 cut(s)	456
Bsp143I	GATC	3 cut(s)	90, 149, 617
BspACI	CCGC	3 cut(s)	116, 314, 626
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	2 cut(s)	176, 189
BspEI	TCCGGA	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	620
BspLI	GGNNCC	1 cut(s)	431
BspMAI	CTGCAG	1 cut(s)	312
BspPI	GGATC	2 cut(s)	85, 144
BsrBI	CCGCTC	1 cut(s)	626
BsrFI	RCCGGY	1 cut(s)	334
BsrI	ACTGG	3 cut(s)	52, 552, 654
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	2 cut(s)	16, 527
BssMI	GATC	3 cut(s)	90, 149, 617
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	529
Bst4CI	ACNGT	4 cut(s)	224, 251, 422, 502
Bst6I	CTCTTC	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	3 cut(s)	163, 176, 268
BstEII	GGTNACC	1 cut(s)	502
BstF5I	GGATG	2 cut(s)	119, 570
BstKTI	GATC	3 cut(s)	93, 152, 620
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	3 cut(s)	90, 149, 617
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNI	CCWGG	1 cut(s)	529
BstPI	GGTNACC	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	527
BstSFI	CTRYAG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	294, 463
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	119, 570
BtsIMutI	CAGTG	3 cut(s)	184, 256, 603
Cac8I	GCNNGC	1 cut(s)	312
CciI	TCATGA	1 cut(s)	620
Cfr10I	RCCGGY	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	400, 488
CviAII	CATG	2 cut(s)	275, 621
CviQI	GTAC	2 cut(s)	400, 488
DdeI	CTNAG	3 cut(s)	163, 176, 268
DpnI	GATC	3 cut(s)	92, 151, 619
DpnII	GATC	3 cut(s)	90, 149, 617
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	594
Eco91I	GGTNACC	1 cut(s)	502
EcoO65I	GGTNACC	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	527
EcoRV	GATATC	1 cut(s)	594
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	2 cut(s)	278, 624
FaiI	YATR	5 cut(s)	172, 276, 395, 622, 649
FatI	CATG	2 cut(s)	274, 620
FauI	CCCGC	1 cut(s)	619
FbaI	TGATCA	1 cut(s)	617
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	3 cut(s)	5, 308, 452
FokI	GGATG	2 cut(s)	106, 577
Fsp4HI	GCNGC	3 cut(s)	5, 308, 452
FspBI	CTAG	2 cut(s)	191, 209
GluI	GCNGC	3 cut(s)	5, 308, 452
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	2 cut(s)	335, 457
Hin1II	CATG	2 cut(s)	278, 624
HpaII	CCGG	2 cut(s)	335, 457
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	2 cut(s)	400, 418
Hpy188I	TCNGA	1 cut(s)	477
Hpy188III	TCNNGA	3 cut(s)	367, 457, 621
Hpy8I	GTNNAC	2 cut(s)	400, 418
Hpy99I	CGWCG	1 cut(s)	331
HpyCH4III	ACNGT	4 cut(s)	224, 251, 422, 502
HpyCH4V	TGCA	3 cut(s)	310, 352, 601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	3 cut(s)	163, 176, 268
Hsp92II	CATG	2 cut(s)	278, 624
Kpn2I	TCCGGA	1 cut(s)	456
Ksp22I	TGATCA	1 cut(s)	617
Kzo9I	GATC	3 cut(s)	90, 149, 617
LmnI	GCTCC	2 cut(s)	435, 459
Lsp1109I	GCAGC	2 cut(s)	294, 463
LweI	GCATC	1 cut(s)	555
MaeI	CTAG	2 cut(s)	191, 209
MaeIII	GTNAC	2 cut(s)	96, 502
MalI	GATC	3 cut(s)	92, 151, 619
MbiI	CCGCTC	1 cut(s)	626
MboI	GATC	3 cut(s)	90, 149, 617
MboII	GAAGA	2 cut(s)	78, 159
MflI	RGATCY	1 cut(s)	149
MluCI	AATT	2 cut(s)	387, 436
MnlI	CCTC	8 cut(s)	62, 138, 163, 172, 313, 363, 420, 471
MroI	TCCGGA	1 cut(s)	456
MseI	TTAA	1 cut(s)	439
MslI	CAYNNNNRTG	1 cut(s)	249
MspI	CCGG	2 cut(s)	335, 457
MspR9I	CCNGG	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	529
MwoI	GCNNNNNNNGC	1 cut(s)	124
NdeII	GATC	3 cut(s)	90, 149, 617
NlaIII	CATG	2 cut(s)	278, 624
NlaIV	GGNNCC	1 cut(s)	431
NmuCI	GTSAC	1 cut(s)	502
OliI	CACNNNNGTG	1 cut(s)	249
PagI	TCATGA	1 cut(s)	620
PkrI	GCNGC	3 cut(s)	6, 309, 453
Psp6I	CCWGG	1 cut(s)	527
PspEI	GGTNACC	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	527
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	149
RsaI	GTAC	2 cut(s)	401, 489
RsaNI	GTAC	2 cut(s)	400, 488
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	3 cut(s)	5, 308, 452
Sau3AI	GATC	3 cut(s)	90, 149, 617
Sau96I	GGNCC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	529
SfaNI	GCATC	1 cut(s)	555
SfcI	CTRYAG	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	249
Sse9I	AATT	2 cut(s)	387, 436
SsiI	CCGC	3 cut(s)	116, 314, 626
SspMI	CTAG	2 cut(s)	191, 209
StyD4I	CCNGG	1 cut(s)	527
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	4 cut(s)	224, 251, 422, 502
TasI	AATT	2 cut(s)	387, 436
TatI	WGTACW	1 cut(s)	399
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TscAI	CASTG	3 cut(s)	184, 256, 603
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	3 cut(s)	4, 307, 451
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	2 cut(s)	368, 509
TspRI	CASTG	3 cut(s)	184, 256, 603
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	2 cut(s)	191, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.