Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009036.1

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Reverse (-)

529 .. 3646

Gene Structure 3118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009036.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgggaaagcaatctcatactgttgcatctcctggaataaggagaggtcgatgggttcctgaggaggacaagaagctctttgctttcgttcaacaacatggccatggaagctggaattccctaccccagaaagctgcaaaagctagattctccagacagtcaaaaccactaatcagccatgaccaacctcctagatttgaacccgtgcctgtaccacaatgccttgacatgaacgaaagagcacgagaaattctgttactgttaaagtcaatattagctgcagacagtggtgctcaattaggtggtggtattggtagcaccgccgcccacgtcgggcaggaggttgcttcattgggtaaagttgatgttgagagcgtgcttgctaattgtgatcagtttgaggctccaagaaccagtacatctgttctgggttttgatgaagtttttggggagtccggtactaataatgactatggtgaactgttggaggcattactacagcacaatcataacagtactggatttgaagtcaaggatgcttggagtttggaacaacgtgtaaaagctaaatgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

191

Amino Acids

20.83

Weight (kDa)

6.38

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	321, 324
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	115, 249
AfaI	GTAC	4 cut(s)	213, 418, 460, 517
AfiI	CCNNNNNNNGG	1 cut(s)	333
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	3 cut(s)	92, 200, 527
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	6 cut(s)	76, 111, 134, 143, 278, 566
AluI	AGCT	6 cut(s)	76, 111, 134, 143, 278, 566
Alw21I	GWGCWC	2 cut(s)	244, 295
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	134, 278
ApoI	RAATTY	2 cut(s)	115, 249
AsuHPI	GGTGA	1 cut(s)	488
AxyI	CCTNAGG	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	102
BauI	CACGAG	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	244, 295
BbvI	GCAGC	2 cut(s)	121, 265
BccI	CCATC	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	391
BfaI	CTAG	2 cut(s)	144, 192
BfmI	CTRYAG	2 cut(s)	279, 497
BisI	GCNGC	3 cut(s)	135, 279, 324
BlsI	GCNGC	3 cut(s)	136, 280, 325
BmcAI	AGTACT	1 cut(s)	517
Bme1390I	CCNGG	1 cut(s)	33
BmgBI	CACGTC	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	57, 405
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	35, 526
BpmI	CTGGAG	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse1I	ACTGG	2 cut(s)	414, 523
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	414, 523
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	121, 265
BshFI	GGCC	1 cut(s)	102
BsiHKAI	GWGCWC	2 cut(s)	244, 295
BsiSI	CCGG	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	333
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	244, 295
Bsp143I	GATC	1 cut(s)	391
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	2 cut(s)	321, 324
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	57, 405
BspMAI	CTGCAG	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	414, 523
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	1 cut(s)	391
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	103
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	6 cut(s)	22, 159, 261, 287, 483, 515
BstC8I	GCNNGC	2 cut(s)	377, 381
BstDEI	CTNAG	1 cut(s)	60
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	541
BstKTI	GATC	1 cut(s)	394
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 140
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	2 cut(s)	279, 497
BstV1I	GCAGC	2 cut(s)	121, 265
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	103
BtrI	CACGTC	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	377, 381
Csp6I	GTAC	4 cut(s)	212, 417, 459, 516
CviAII	CATG	4 cut(s)	98, 104, 179, 229
CviJI	RGCY	9 cut(s)	76, 102, 111, 134, 143, 177, 278, 404, 566
CviKI_1	RGCY	9 cut(s)	76, 102, 111, 134, 143, 177, 278, 404, 566
CviQI	GTAC	4 cut(s)	212, 417, 459, 516
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	103
Eco81I	CCTNAGG	1 cut(s)	60
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	4 cut(s)	101, 107, 182, 232
FaiI	YATR	7 cut(s)	18, 99, 105, 180, 230, 474, 510
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	4 cut(s)	97, 103, 178, 228
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	135, 279, 324
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	3 cut(s)	135, 279, 324
FspBI	CTAG	2 cut(s)	144, 192
GluI	GCNGC	3 cut(s)	135, 279, 324
GsuI	CTGGAG	1 cut(s)	136
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	1 cut(s)	456
Hin1II	CATG	4 cut(s)	101, 107, 182, 232
HinfI	GANTC	2 cut(s)	147, 452
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	1 cut(s)	479
Hpy188III	TCNNGA	2 cut(s)	59, 153
Hpy8I	GTNNAC	1 cut(s)	479
Hpy99I	CGWCG	1 cut(s)	335
HpyCH4III	ACNGT	6 cut(s)	22, 159, 261, 287, 483, 515
HpyCH4IV	ACGT	2 cut(s)	330, 556
HpyCH4V	TGCA	3 cut(s)	26, 137, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 140
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	2 cut(s)	330, 556
Hsp92II	CATG	4 cut(s)	101, 107, 182, 232
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	2 cut(s)	121, 265
LweI	GCATC	2 cut(s)	35, 526
MaeI	CTAG	2 cut(s)	144, 192
MaeII	ACGT	2 cut(s)	330, 556
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MhlI	GDGCHC	2 cut(s)	244, 295
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	4 cut(s)	115, 249, 296, 385
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	7 cut(s)	38, 55, 58, 198, 334, 394, 481
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	263
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	108, 140
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	4 cut(s)	101, 107, 182, 232
NlaIV	GGNNCC	2 cut(s)	57, 405
PfeI	GAWTC	1 cut(s)	147
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	3 cut(s)	136, 280, 325
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	57, 405
PstI	CTGCAG	1 cut(s)	283
RsaI	GTAC	4 cut(s)	213, 418, 460, 517
RsaNI	GTAC	4 cut(s)	212, 417, 459, 516
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	3 cut(s)	135, 279, 324
Sau3AI	GATC	1 cut(s)	391
ScaI	AGTACT	1 cut(s)	517
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	2 cut(s)	244, 295
SfaNI	GCATC	2 cut(s)	35, 526
SfcI	CTRYAG	2 cut(s)	279, 497
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	4 cut(s)	115, 249, 296, 385
SsiI	CCGC	2 cut(s)	321, 324
SspI	AATATT	1 cut(s)	273
SspMI	CTAG	2 cut(s)	144, 192
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	6 cut(s)	22, 159, 261, 287, 483, 515
TaiI	ACGT	2 cut(s)	333, 559
TaqI	TCGA	1 cut(s)	49
TasI	AATT	4 cut(s)	115, 249, 296, 385
TatI	WGTACW	2 cut(s)	416, 515
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	2 cut(s)	134, 278
TspDTI	ATGAA	3 cut(s)	245, 339, 453
TspRI	CASTG	1 cut(s)	292
XapI	RAATTY	2 cut(s)	115, 249
XspI	CTAG	2 cut(s)	144, 192
ZrmI	AGTACT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.