Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Reverse (-)

30241829 .. 30244793

Gene Structure 2965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGGAAAGCAATCTCATACTGTTGCATCTCCTGGAATAAGGAGAGGTCGATGGGTTCCTGAGGAGGACAAGAAGCTCTTTGCTTTCGTTCAACAACATGGCCATGGAAGCTGGAATTCCCTACCCCAGAAAGCTGGTCTCCAAAGATGTGGAAAGAGCTGCAGGTTAAGATGGAGAAACTATCTAAACCCTGATATTAAGAGAGGAAATTTCAGTTTGCAGGAAGACCAGACTATCATTCTACTTCATGCACATTTGGGCAACACGTGGTCGGCCATAGCTGTACAGTTACCACAGAGAACAGATAATGAGATAAAGAACTACTGGAACACATATCTAAAGAAGAGGTTAGCCAAGATAGGGTTTGATCCTCTAACCCACAAGCCCAAGACCGCCATCCTCTCTGTGAATAGATCCGCCCCTGCTGATGGCGGCGACCCGAAGAACCTCTCAAACCTCAGCCACATAGCTCAGTGGGAAACTGCTCGGCTTCAAGCAGAAGCTAGATTCTCCAGACAGTCAAAACCACTAATCAGTCATGACCAACCTCCTAGATTTGAACCCGTGCCTGTACCACAATGCCTTGACATGAACGAAAGAGCACGAGAAATTCTGTTACTGTTAAAGTCAATATTAGCTGCAGACAGTGGTGCTCAATTAGGTGGTGGTATTGGTAGCACCGTCGCCCACGTCGGGCAGGAGGTTGCTTCATTTGGTAAAGCTGATGTTGAGAGCGTGCTTGCTAATTGTGATCAGTTTGAGGCTCCAAGAACCAGTACATCTGTTCTGGGTTTTGATGAAGTTTTTGGGGAGTCCGGTACTAATAATGACTATGGTGAACTGTTGGAGGCATTACTACAGCACAATCATAACAGTACTGGATTTGAAGTCGAGGATGCTTGGAGTTTGGAACAACGTGTAAAAGCTGAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

311

Amino Acids

34.56

Weight (kDa)

7.73

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	8.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 78	8.6e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 113	4.3e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 123	4.9e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	153
AciI	CCGC	3 cut(s)	393, 417, 432
AclWI	GGATC	2 cut(s)	362, 408
AcoI	YGGCCR	2 cut(s)	100, 273
AcsI	RAATTY	3 cut(s)	115, 208, 609
AcvI	CACGTG	1 cut(s)	267
AfaI	GTAC	5 cut(s)	285, 573, 778, 820, 877
AfiI	CCNNNNNNNGG	3 cut(s)	360, 428, 693
AflIII	ACRYGT	2 cut(s)	264, 916
AgsI	TTSAA	4 cut(s)	92, 494, 560, 887
AjiI	CACGTC	1 cut(s)	691
AjnI	CCWGG	1 cut(s)	31
Alw21I	GWGCWC	2 cut(s)	604, 655
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	2 cut(s)	362, 408
AoxI	GGCC	2 cut(s)	100, 273
ApeKI	GCWGC	2 cut(s)	159, 638
ApoI	RAATTY	3 cut(s)	115, 208, 609
AsuHPI	GGTGA	1 cut(s)	848
AxyI	CCTNAGG	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	102
BauI	CACGAG	1 cut(s)	603
BbrPI	CACGTG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	2 cut(s)	604, 655
BbvCI	CCTCAGC	1 cut(s)	458
BbvI	GCAGC	2 cut(s)	146, 625
BccI	CCATC	4 cut(s)	45, 165, 404, 422
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	751
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	2 cut(s)	504, 552
BfmI	CTRYAG	3 cut(s)	160, 639, 857
BfuAI	ACCTGC	1 cut(s)	153
BisI	GCNGC	3 cut(s)	160, 433, 639
BlsI	GCNGC	3 cut(s)	161, 434, 640
BmcAI	AGTACT	1 cut(s)	877
Bme1390I	CCNGG	1 cut(s)	33
BmgBI	CACGTC	1 cut(s)	691
BmiI	GGNNCC	2 cut(s)	57, 765
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	35, 886
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	496
Bpu10I	CCTNAGC	1 cut(s)	458
BsaAI	YACGTR	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	815
Bsc4I	CCNNNNNNNGG	3 cut(s)	360, 428, 693
Bse1I	ACTGG	3 cut(s)	329, 774, 883
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	2 cut(s)	396, 901
BseLI	CCNNNNNNNGG	3 cut(s)	360, 428, 693
BseMII	CTCAG	3 cut(s)	51, 472, 485
BseNI	ACTGG	3 cut(s)	329, 774, 883
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	146, 625
BshFI	GGCC	2 cut(s)	102, 275
BsiHKAI	GWGCWC	2 cut(s)	604, 655
BsiSI	CCGG	1 cut(s)	816
BslI	CCNNNNNNNGG	3 cut(s)	360, 428, 693
BsmAI	GTCTC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	935
BsnI	GGCC	2 cut(s)	102, 275
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	604, 655
Bsp1407I	TGTACA	1 cut(s)	283
Bsp143I	GATC	3 cut(s)	367, 413, 751
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	3 cut(s)	393, 417, 432
BspANI	GGCC	2 cut(s)	102, 275
BspCNI	CTCAG	3 cut(s)	52, 471, 484
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	57, 765
BspMAI	CTGCAG	2 cut(s)	164, 643
BspMI	ACCTGC	1 cut(s)	153
BspPI	GGATC	2 cut(s)	362, 408
BspTNI	GGTCTC	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	283
BsrI	ACTGG	3 cut(s)	329, 774, 883
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	3 cut(s)	367, 413, 751
BssSI	CACGAG	1 cut(s)	603
BssT1I	CCWWGG	1 cut(s)	103
Bst2BI	CACGAG	1 cut(s)	603
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	8 cut(s)	22, 288, 519, 621, 647, 682, 843, 875
Bst6I	CTCTTC	1 cut(s)	338
BstAUI	TGTACA	1 cut(s)	283
BstBAI	YACGTR	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	737, 741
BstDEI	CTNAG	3 cut(s)	60, 458, 471
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	396, 901
BstKTI	GATC	3 cut(s)	370, 416, 754
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	3 cut(s)	367, 413, 751
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	3 cut(s)	160, 639, 857
BstV1I	GCAGC	2 cut(s)	146, 625
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	413
BstXI	CCANNNNNNTGG	2 cut(s)	134, 149
BstYI	RGATCY	1 cut(s)	413
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	102, 275
BtgI	CCRYGG	1 cut(s)	103
BtrI	CACGTC	1 cut(s)	691
BtsCI	GGATG	2 cut(s)	396, 901
BtsIMutI	CAGTG	2 cut(s)	479, 652
BveI	ACCTGC	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	737, 741
CciI	TCATGA	1 cut(s)	538
Csp6I	GTAC	5 cut(s)	284, 572, 777, 819, 876
CviAII	CATG	5 cut(s)	98, 104, 248, 539, 589
CviQI	GTAC	5 cut(s)	284, 572, 777, 819, 876
DdeI	CTNAG	3 cut(s)	60, 458, 471
DpnI	GATC	3 cut(s)	369, 415, 753
DpnII	GATC	3 cut(s)	367, 413, 751
EaeI	YGGCCR	2 cut(s)	100, 273
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EciI	GGCGGA	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	143
Eco72I	CACGTG	1 cut(s)	267
Eco81I	CCTNAGG	1 cut(s)	60
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	5 cut(s)	101, 107, 251, 542, 592
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	5 cut(s)	97, 103, 247, 538, 588
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	3 cut(s)	160, 433, 639
FokI	GGATG	2 cut(s)	383, 908
Fsp4HI	GCNGC	3 cut(s)	160, 433, 639
FspBI	CTAG	2 cut(s)	504, 552
GluI	GCNGC	3 cut(s)	160, 433, 639
GsuI	CTGGAG	1 cut(s)	496
HaeIII	GGCC	2 cut(s)	102, 275
HapII	CCGG	1 cut(s)	816
Hin1II	CATG	5 cut(s)	101, 107, 251, 542, 592
HinfI	GANTC	2 cut(s)	507, 812
HpaII	CCGG	1 cut(s)	816
HphI	GGTGA	1 cut(s)	848
Hpy166II	GTNNAC	1 cut(s)	839
Hpy188III	TCNNGA	3 cut(s)	59, 513, 539
Hpy8I	GTNNAC	1 cut(s)	839
Hpy99I	CGWCG	2 cut(s)	686, 695
HpyCH4III	ACNGT	8 cut(s)	22, 288, 519, 621, 647, 682, 843, 875
HpyCH4IV	ACGT	3 cut(s)	266, 690, 916
HpyCH4V	TGCA	5 cut(s)	26, 162, 220, 251, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	3 cut(s)	60, 458, 471
HpySE526I	ACGT	3 cut(s)	266, 690, 916
Hsp92II	CATG	5 cut(s)	101, 107, 251, 542, 592
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	3 cut(s)	367, 413, 751
LmnI	GCTCC	1 cut(s)	769
Lsp1109I	GCAGC	2 cut(s)	146, 625
LweI	GCATC	2 cut(s)	35, 886
MaeI	CTAG	2 cut(s)	504, 552
MaeII	ACGT	3 cut(s)	266, 690, 916
MaeIII	GTNAC	2 cut(s)	288, 615
MalI	GATC	3 cut(s)	369, 415, 753
MboI	GATC	3 cut(s)	367, 413, 751
MboII	GAAGA	3 cut(s)	236, 355, 454
MflI	RGATCY	1 cut(s)	413
MhlI	GDGCHC	2 cut(s)	604, 655
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	5 cut(s)	115, 208, 609, 656, 745
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	821
MmeI	TCCRAC	1 cut(s)	825
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	3 cut(s)	167, 198, 623
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	1 cut(s)	816
MspR9I	CCNGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	935
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	108
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	3 cut(s)	367, 413, 751
NlaIII	CATG	5 cut(s)	101, 107, 251, 542, 592
NlaIV	GGNNCC	2 cut(s)	57, 765
NmeAIII	GCCGAG	1 cut(s)	466
PagI	TCATGA	1 cut(s)	538
PctI	GAATGC	1 cut(s)	935
PfeI	GAWTC	1 cut(s)	507
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	3 cut(s)	161, 434, 640
PleI	GAGTC	1 cut(s)	820
PmaCI	CACGTG	1 cut(s)	267
PmlI	CACGTG	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	820
Ppu21I	YACGTR	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	31
PspCI	CACGTG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	57, 765
PstI	CTGCAG	2 cut(s)	164, 643
PsuI	RGATCY	1 cut(s)	413
RsaI	GTAC	5 cut(s)	285, 573, 778, 820, 877
RsaNI	GTAC	5 cut(s)	284, 572, 777, 819, 876
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	3 cut(s)	167, 198, 623
SatI	GCNGC	3 cut(s)	160, 433, 639
Sau3AI	GATC	3 cut(s)	367, 413, 751
ScaI	AGTACT	1 cut(s)	877
SchI	GAGTC	1 cut(s)	821
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	2 cut(s)	604, 655
SfaNI	GCATC	2 cut(s)	35, 886
SfcI	CTRYAG	3 cut(s)	160, 639, 857
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	5 cut(s)	115, 208, 609, 656, 745
SsiI	CCGC	3 cut(s)	393, 417, 432
SspI	AATATT	1 cut(s)	633
SspMI	CTAG	2 cut(s)	504, 552
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	8 cut(s)	22, 288, 519, 621, 647, 682, 843, 875
TaiI	ACGT	3 cut(s)	269, 693, 919
TaqI	TCGA	2 cut(s)	49, 891
TasI	AATT	5 cut(s)	115, 208, 609, 656, 745
TatI	WGTACW	3 cut(s)	283, 776, 875
TauI	GCSGC	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	507
Tru1I	TTAA	3 cut(s)	167, 198, 623
Tru9I	TTAA	3 cut(s)	167, 198, 623
TscAI	CASTG	2 cut(s)	479, 652
TseI	GCWGC	2 cut(s)	159, 638
TspDTI	ATGAA	4 cut(s)	236, 605, 699, 813
TspRI	CASTG	2 cut(s)	479, 652
XapI	RAATTY	3 cut(s)	115, 208, 609
XspI	CTAG	2 cut(s)	504, 552
ZrmI	AGTACT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.