SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 496 |
| AccB1I | GGYRCC | 1 cut(s) | 387 |
| AccI | GTMKAC | 2 cut(s) | 644, 1084 |
| AciI | CCGC | 5 cut(s) | 122, 408, 463, 593, 1044 |
| AclI | AACGTT | 1 cut(s) | 666 |
| AclWI | GGATC | 1 cut(s) | 359 |
| AcoI | YGGCCR | 3 cut(s) | 97, 409, 1020 |
| AfaI | GTAC | 1 cut(s) | 910 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 131, 418, 480, 1057 |
| AflIII | ACRYGT | 1 cut(s) | 574 |
| AgsI | TTSAA | 4 cut(s) | 37, 470, 739, 969 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 718 |
| AjnI | CCWGG | 1 cut(s) | 479 |
| AleI | CACNNNNGTG | 1 cut(s) | 889 |
| Alw21I | GWGCWC | 1 cut(s) | 621 |
| Alw26I | GTCTC | 2 cut(s) | 337, 726 |
| AlwI | GGATC | 1 cut(s) | 359 |
| Ama87I | CYCGRG | 1 cut(s) | 716 |
| AoxI | GGCC | 4 cut(s) | 97, 185, 409, 1020 |
| ApeKI | GCWGC | 6 cut(s) | 405, 425, 502, 546, 878, 1047 |
| AspLEI | GCGC | 1 cut(s) | 461 |
| AspS9I | GGNCC | 3 cut(s) | 44, 171, 186 |
| AsuC2I | CCSGG | 1 cut(s) | 597 |
| AsuHPI | GGTGA | 3 cut(s) | 3, 1098, 1108 |
| AvaI | CYCGRG | 1 cut(s) | 716 |
| AvaII | GGWCC | 2 cut(s) | 44, 171 |
| AxyI | CCTNAGG | 2 cut(s) | 57, 182 |
| BalI | TGGCCA | 1 cut(s) | 99 |
| BanI | GGYRCC | 1 cut(s) | 387 |
| BanII | GRGCYC | 2 cut(s) | 138, 801 |
| BbsI | GAAGAC | 1 cut(s) | 69 |
| Bbv12I | GWGCWC | 1 cut(s) | 621 |
| BbvI | GCAGC | 6 cut(s) | 412, 417, 489, 558, 865, 1059 |
| BccI | CCATC | 4 cut(s) | 22, 573, 829, 973 |
| BceAI | ACGGC | 4 cut(s) | 412, 589, 767, 1057 |
| BciT130I | CCWGG | 1 cut(s) | 481 |
| BclI | TGATCA | 1 cut(s) | 540 |
| BcnI | CCSGG | 1 cut(s) | 597 |
| BcoDI | GTCTC | 2 cut(s) | 337, 726 |
| BfmI | CTRYAG | 2 cut(s) | 273, 503 |
| BfoI | RGCGCY | 1 cut(s) | 462 |
| BfuAI | ACCTGC | 1 cut(s) | 496 |
| BglII | AGATCT | 1 cut(s) | 1029 |
| BisI | GCNGC | 9 cut(s) | 122, 406, 409, 426, 503, 547, 879, 1045, 1048 |
| BlsI | GCNGC | 9 cut(s) | 123, 407, 410, 427, 504, 548, 880, 1046, 1049 |
| Bme1390I | CCNGG | 2 cut(s) | 481, 597 |
| Bme18I | GGWCC | 2 cut(s) | 44, 171 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 718 |
| BmeT110I | CYCGRG | 1 cut(s) | 716 |
| BmgT120I | GGNCC | 3 cut(s) | 44, 171, 186 |
| BmiI | GGNNCC | 4 cut(s) | 137, 389, 400, 819 |
| BmrFI | CCNGG | 2 cut(s) | 481, 597 |
| BmrI | ACTGGG | 1 cut(s) | 1084 |
| BmsI | GCATC | 2 cut(s) | 369, 859 |
| BmuI | ACTGGG | 1 cut(s) | 1084 |
| BpiI | GAAGAC | 1 cut(s) | 69 |
| BpmI | CTGGAG | 1 cut(s) | 981 |
| Bpu10I | CCTNAGC | 2 cut(s) | 417, 919 |
| BpuEI | CTTGAG | 1 cut(s) | 320 |
| BpuMI | CCSGG | 1 cut(s) | 597 |
| Bsa29I | ATCGAT | 1 cut(s) | 363 |
| BsaJI | CCNNGG | 8 cut(s) | 47, 94, 100, 383, 394, 654, 705, 825 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 383, 413, 896, 926 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 131, 418, 480, 1057 |
| Bse1I | ACTGG | 2 cut(s) | 326, 1079 |
| Bse21I | CCTNAGG | 2 cut(s) | 57, 182 |
| BseBI | CCWGG | 1 cut(s) | 481 |
| BseCI | ATCGAT | 1 cut(s) | 363 |
| BseDI | CCNNGG | 8 cut(s) | 47, 94, 100, 383, 394, 654, 705, 825 |
| BseGI | GGATG | 4 cut(s) | 619, 728, 821, 874 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 131, 418, 480, 1057 |
| BseMII | CTCAG | 6 cut(s) | 48, 155, 173, 461, 634, 933 |
| BseNI | ACTGG | 2 cut(s) | 326, 1079 |
| BseRI | GAGGAG | 4 cut(s) | 541, 917, 947, 1073 |
| BseXI | GCAGC | 6 cut(s) | 412, 417, 489, 558, 865, 1059 |
| BseYI | CCCAGC | 1 cut(s) | 355 |
| BshFI | GGCC | 4 cut(s) | 99, 187, 411, 1022 |
| BshNI | GGYRCC | 1 cut(s) | 387 |
| BshVI | ATCGAT | 1 cut(s) | 363 |
| BsiHKAI | GWGCWC | 1 cut(s) | 621 |
| BsiHKCI | CYCGRG | 1 cut(s) | 716 |
| BsiSI | CCGG | 3 cut(s) | 402, 596, 1023 |
| BslFI | GGGAC | 1 cut(s) | 1091 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 131, 418, 480, 1057 |
| BsmAI | GTCTC | 2 cut(s) | 337, 726 |
| BsmFI | GGGAC | 1 cut(s) | 1091 |
| BsnI | GGCC | 4 cut(s) | 99, 187, 411, 1022 |
| BsoBI | CYCGRG | 1 cut(s) | 716 |
| Bsp1286I | GDGCHC | 3 cut(s) | 138, 621, 801 |
| Bsp143I | GATC | 5 cut(s) | 223, 309, 364, 540, 1029 |
| Bsp19I | CCATGG | 4 cut(s) | 47, 94, 100, 705 |
| BspACI | CCGC | 5 cut(s) | 122, 408, 463, 593, 1044 |
| BspANI | GGCC | 4 cut(s) | 99, 187, 411, 1022 |
| BspCNI | CTCAG | 6 cut(s) | 49, 156, 174, 460, 633, 932 |
| BspDI | ATCGAT | 1 cut(s) | 363 |
| BspHI | TCATGA | 1 cut(s) | 975 |
| BspLI | GGNNCC | 4 cut(s) | 137, 389, 400, 819 |
| BspMAI | CTGCAG | 1 cut(s) | 507 |
| BspMI | ACCTGC | 1 cut(s) | 496 |
| BspPI | GGATC | 1 cut(s) | 359 |
| BspQI | GCTCTTC | 1 cut(s) | 146 |
| BspT107I | GGYRCC | 1 cut(s) | 387 |
| BsrI | ACTGG | 2 cut(s) | 326, 1079 |
| BssECI | CCNNGG | 8 cut(s) | 47, 94, 100, 383, 394, 654, 705, 825 |
| BssMI | GATC | 5 cut(s) | 223, 309, 364, 540, 1029 |
| BssNAI | GTATAC | 1 cut(s) | 1085 |
| BssT1I | CCWWGG | 4 cut(s) | 47, 94, 100, 705 |
| Bst1107I | GTATAC | 1 cut(s) | 1085 |
| Bst2UI | CCWGG | 1 cut(s) | 481 |
| Bst4CI | ACNGT | 3 cut(s) | 658, 1082, 1110 |
| Bst6I | CTCTTC | 2 cut(s) | 146, 335 |
| BstC8I | GCNNGC | 5 cut(s) | 110, 114, 463, 957, 1020 |
| BstDEI | CTNAG | 8 cut(s) | 57, 164, 182, 291, 417, 447, 620, 919 |
| BstDSI | CCRYGG | 6 cut(s) | 47, 94, 100, 394, 654, 705 |
| BstEII | GGTNACC | 1 cut(s) | 9 |
| BstF5I | GGATG | 4 cut(s) | 619, 728, 821, 874 |
| BstH2I | RGCGCY | 1 cut(s) | 462 |
| BstHHI | GCGC | 1 cut(s) | 461 |
| BstKTI | GATC | 5 cut(s) | 226, 312, 367, 543, 1032 |
| BstMAI | GTCTC | 2 cut(s) | 337, 726 |
| BstMBI | GATC | 5 cut(s) | 223, 309, 364, 540, 1029 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 105, 118, 405, 422, 601, 878, 887 |
| BstNI | CCWGG | 1 cut(s) | 481 |
| BstNSI | RCATGY | 1 cut(s) | 578 |
| BstPI | GGTNACC | 1 cut(s) | 9 |
| BstSCI | CCNGG | 2 cut(s) | 479, 595 |
| BstSFI | CTRYAG | 2 cut(s) | 273, 503 |
| BstV1I | GCAGC | 6 cut(s) | 412, 417, 489, 558, 865, 1059 |
| BstV2I | GAAGAC | 1 cut(s) | 69 |
| BstX2I | RGATCY | 1 cut(s) | 1029 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 101, 146 |
| BstYI | RGATCY | 1 cut(s) | 1029 |
| BstZ17I | GTATAC | 1 cut(s) | 1085 |
| Bsu15I | ATCGAT | 1 cut(s) | 363 |
| Bsu36I | CCTNAGG | 2 cut(s) | 57, 182 |
| BsuRI | GGCC | 4 cut(s) | 99, 187, 411, 1022 |
| BsuTUI | ATCGAT | 1 cut(s) | 363 |
| BtgI | CCRYGG | 6 cut(s) | 47, 94, 100, 394, 654, 705 |
| BtsCI | GGATG | 4 cut(s) | 619, 728, 821, 874 |
| BtsIMutI | CAGTG | 2 cut(s) | 455, 990 |
| BveI | ACCTGC | 1 cut(s) | 496 |
| Cac8I | GCNNGC | 5 cut(s) | 110, 114, 463, 957, 1020 |
| CciI | TCATGA | 1 cut(s) | 975 |
| CfoI | GCGC | 1 cut(s) | 461 |
| Cfr13I | GGNCC | 3 cut(s) | 44, 171, 186 |
| ClaI | ATCGAT | 1 cut(s) | 363 |
| CseI | GACGC | 2 cut(s) | 431, 566 |
| Csp6I | GTAC | 1 cut(s) | 909 |
| CviQI | GTAC | 1 cut(s) | 909 |
| DdeI | CTNAG | 8 cut(s) | 57, 164, 182, 291, 417, 447, 620, 919 |
| DpnI | GATC | 5 cut(s) | 225, 311, 366, 542, 1031 |
| DpnII | GATC | 5 cut(s) | 223, 309, 364, 540, 1029 |
| DriI | GACNNNNNGTC | 1 cut(s) | 718 |
| EaeI | YGGCCR | 3 cut(s) | 97, 409, 1020 |
| Eam1104I | CTCTTC | 2 cut(s) | 146, 335 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 718 |
| EarI | CTCTTC | 2 cut(s) | 146, 335 |
| EciI | GGCGGA | 1 cut(s) | 582 |
| Eco130I | CCWWGG | 4 cut(s) | 47, 94, 100, 705 |
| Eco24I | GRGCYC | 2 cut(s) | 138, 801 |
| Eco47I | GGWCC | 2 cut(s) | 44, 171 |
| Eco81I | CCTNAGG | 2 cut(s) | 57, 182 |
| Eco88I | CYCGRG | 1 cut(s) | 716 |
| Eco91I | GGTNACC | 1 cut(s) | 9 |
| EcoO65I | GGTNACC | 1 cut(s) | 9 |
| EcoRII | CCWGG | 1 cut(s) | 479 |
| EcoT14I | CCWWGG | 4 cut(s) | 47, 94, 100, 705 |
| EcoT38I | GRGCYC | 2 cut(s) | 138, 801 |
| ErhI | CCWWGG | 4 cut(s) | 47, 94, 100, 705 |
| FaqI | GGGAC | 1 cut(s) | 1091 |
| FauI | CCCGC | 1 cut(s) | 470 |
| FbaI | TGATCA | 1 cut(s) | 540 |
| FblI | GTMKAC | 2 cut(s) | 644, 1084 |
| Fnu4HI | GCNGC | 9 cut(s) | 122, 406, 409, 426, 503, 547, 879, 1045, 1048 |
| FokI | GGATG | 4 cut(s) | 626, 715, 808, 881 |
| FriOI | GRGCYC | 2 cut(s) | 138, 801 |
| Fsp4HI | GCNGC | 9 cut(s) | 122, 406, 409, 426, 503, 547, 879, 1045, 1048 |
| GlaI | GCGC | 1 cut(s) | 460 |
| GluI | GCNGC | 9 cut(s) | 122, 406, 409, 426, 503, 547, 879, 1045, 1048 |
| GsaI | CCCAGC | 1 cut(s) | 359 |
| GsuI | CTGGAG | 1 cut(s) | 981 |
| HaeII | RGCGCY | 1 cut(s) | 462 |
| HaeIII | GGCC | 4 cut(s) | 99, 187, 411, 1022 |
| HapII | CCGG | 3 cut(s) | 402, 596, 1023 |
| HgaI | GACGC | 2 cut(s) | 431, 566 |
| HhaI | GCGC | 1 cut(s) | 461 |
| Hin6I | GCGC | 1 cut(s) | 459 |
| HinP1I | GCGC | 1 cut(s) | 459 |
| HincII | GTYRAC | 3 cut(s) | 645, 670, 787 |
| HindII | GTYRAC | 3 cut(s) | 645, 670, 787 |
| HinfI | GANTC | 3 cut(s) | 52, 494, 719 |
| HpaI | GTTAAC | 2 cut(s) | 670, 787 |
| HpaII | CCGG | 3 cut(s) | 402, 596, 1023 |
| HphI | GGTGA | 3 cut(s) | 3, 1098, 1108 |
| Hpy166II | GTNNAC | 7 cut(s) | 171, 645, 670, 787, 1006, 1085, 1099 |
| Hpy188I | TCNGA | 7 cut(s) | 165, 228, 257, 556, 623, 826, 1036 |
| Hpy188III | TCNNGA | 7 cut(s) | 56, 76, 313, 337, 538, 940, 976 |
| Hpy8I | GTNNAC | 7 cut(s) | 171, 645, 670, 787, 1006, 1085, 1099 |
| Hpy99I | CGWCG | 2 cut(s) | 560, 1018 |
| HpyCH4III | ACNGT | 3 cut(s) | 658, 1082, 1110 |
| HpyCH4IV | ACGT | 2 cut(s) | 666, 911 |
| HpyCH4V | TGCA | 4 cut(s) | 217, 505, 775, 835 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 105, 118, 405, 422, 601, 878, 887 |
| HpyF3I | CTNAG | 8 cut(s) | 57, 164, 182, 291, 417, 447, 620, 919 |
| HpySE526I | ACGT | 2 cut(s) | 666, 911 |
| HspAI | GCGC | 1 cut(s) | 459 |
| Ksp22I | TGATCA | 1 cut(s) | 540 |
| KspAI | GTTAAC | 2 cut(s) | 670, 787 |
| Kzo9I | GATC | 5 cut(s) | 223, 309, 364, 540, 1029 |
| LguI | GCTCTTC | 1 cut(s) | 146 |
| LmnI | GCTCC | 6 cut(s) | 141, 246, 404, 554, 595, 1068 |
| Lsp1109I | GCAGC | 6 cut(s) | 412, 417, 489, 558, 865, 1059 |
| LweI | GCATC | 2 cut(s) | 369, 859 |
| MaeII | ACGT | 2 cut(s) | 666, 911 |
| MaeIII | GTNAC | 2 cut(s) | 9, 850 |
| MalI | GATC | 5 cut(s) | 225, 311, 366, 542, 1031 |
| MboI | GATC | 5 cut(s) | 223, 309, 364, 540, 1029 |
| MboII | GAAGA | 5 cut(s) | 37, 74, 163, 233, 352 |
| MflI | RGATCY | 1 cut(s) | 1029 |
| MhlI | GDGCHC | 3 cut(s) | 138, 621, 801 |
| MlsI | TGGCCA | 1 cut(s) | 99 |
| MluCI | AATT | 3 cut(s) | 175, 678, 1090 |
| MluNI | TGGCCA | 1 cut(s) | 99 |
| MlyI | GAGTC | 2 cut(s) | 46, 728 |
| MmeI | TCCRAC | 2 cut(s) | 579, 749 |
| Mox20I | TGGCCA | 1 cut(s) | 99 |
| MscI | TGGCCA | 1 cut(s) | 99 |
| MseI | TTAA | 6 cut(s) | 669, 753, 762, 786, 792, 846 |
| MslI | CAYNNNNRTG | 2 cut(s) | 99, 889 |
| Msp20I | TGGCCA | 1 cut(s) | 99 |
| MspA1I | CMGCKG | 2 cut(s) | 408, 959 |
| MspI | CCGG | 3 cut(s) | 402, 596, 1023 |
| MspR9I | CCNGG | 2 cut(s) | 481, 597 |
| MvaI | CCWGG | 1 cut(s) | 481 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 105, 118, 405, 422, 601, 878, 887 |
| NciI | CCSGG | 1 cut(s) | 597 |
| NcoI | CCATGG | 4 cut(s) | 47, 94, 100, 705 |
| NdeII | GATC | 5 cut(s) | 223, 309, 364, 540, 1029 |
| NlaIV | GGNNCC | 4 cut(s) | 137, 389, 400, 819 |
| NmeAIII | GCCGAG | 1 cut(s) | 408 |
| NmuCI | GTSAC | 1 cut(s) | 9 |
| NspI | RCATGY | 1 cut(s) | 578 |
| OliI | CACNNNNGTG | 1 cut(s) | 889 |
| PaeR7I | CTCGAG | 1 cut(s) | 716 |
| PagI | TCATGA | 1 cut(s) | 975 |
| PciI | ACATGT | 1 cut(s) | 574 |
| PciSI | GCTCTTC | 1 cut(s) | 146 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 801 |
| PfeI | GAWTC | 1 cut(s) | 494 |
| PkrI | GCNGC | 9 cut(s) | 123, 407, 410, 427, 504, 548, 880, 1046, 1049 |
| PleI | GAGTC | 2 cut(s) | 46, 727 |
| PpsI | GAGTC | 2 cut(s) | 46, 727 |
| PscI | ACATGT | 1 cut(s) | 574 |
| Psp1406I | AACGTT | 1 cut(s) | 666 |
| Psp6I | CCWGG | 1 cut(s) | 479 |
| PspEI | GGTNACC | 1 cut(s) | 9 |
| PspFI | CCCAGC | 1 cut(s) | 355 |
| PspGI | CCWGG | 1 cut(s) | 479 |
| PspN4I | GGNNCC | 4 cut(s) | 137, 389, 400, 819 |
| PspPI | GGNCC | 3 cut(s) | 44, 171, 186 |
| PspXI | VCTCGAGB | 1 cut(s) | 716 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1055, 1087 |
| PstI | CTGCAG | 1 cut(s) | 507 |
| PsuI | RGATCY | 1 cut(s) | 1029 |
| PvuII | CAGCTG | 1 cut(s) | 959 |
| RsaI | GTAC | 1 cut(s) | 910 |
| RsaNI | GTAC | 1 cut(s) | 909 |
| RseI | CAYNNNNRTG | 2 cut(s) | 99, 889 |
| SalI | GTCGAC | 1 cut(s) | 643 |
| SapI | GCTCTTC | 1 cut(s) | 146 |
| SaqAI | TTAA | 6 cut(s) | 669, 753, 762, 786, 792, 846 |
| SatI | GCNGC | 9 cut(s) | 122, 406, 409, 426, 503, 547, 879, 1045, 1048 |
| Sau3AI | GATC | 5 cut(s) | 223, 309, 364, 540, 1029 |
| Sau96I | GGNCC | 3 cut(s) | 44, 171, 186 |
| SchI | GAGTC | 2 cut(s) | 46, 728 |
| ScrFI | CCNGG | 2 cut(s) | 481, 597 |
| SduI | GDGCHC | 3 cut(s) | 138, 621, 801 |
| SfaNI | GCATC | 2 cut(s) | 369, 859 |
| SfcI | CTRYAG | 2 cut(s) | 273, 503 |
| Sfr274I | CTCGAG | 1 cut(s) | 716 |
| SinI | GGWCC | 2 cut(s) | 44, 171 |
| SlaI | CTCGAG | 1 cut(s) | 716 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 99, 889 |
| SmlI | CTYRAG | 2 cut(s) | 335, 716 |
| SmoI | CTYRAG | 2 cut(s) | 335, 716 |
| Sse9I | AATT | 3 cut(s) | 175, 678, 1090 |
| SsiI | CCGC | 5 cut(s) | 122, 408, 463, 593, 1044 |
| StyD4I | CCNGG | 2 cut(s) | 479, 595 |
| StyI | CCWWGG | 4 cut(s) | 47, 94, 100, 705 |
| TaaI | ACNGT | 3 cut(s) | 658, 1082, 1110 |
| TaiI | ACGT | 2 cut(s) | 669, 914 |
| TaqI | TCGA | 4 cut(s) | 87, 363, 644, 717 |
| TasI | AATT | 3 cut(s) | 175, 678, 1090 |
| TauI | GCSGC | 3 cut(s) | 124, 411, 1047 |
| TfiI | GAWTC | 1 cut(s) | 494 |
| Tru1I | TTAA | 6 cut(s) | 669, 753, 762, 786, 792, 846 |
| Tru9I | TTAA | 6 cut(s) | 669, 753, 762, 786, 792, 846 |
| TscAI | CASTG | 2 cut(s) | 455, 997 |
| TseFI | GTSAC | 1 cut(s) | 9 |
| TseI | GCWGC | 6 cut(s) | 405, 425, 502, 546, 878, 1047 |
| Tsp45I | GTSAC | 1 cut(s) | 9 |
| TspGWI | ACGGA | 1 cut(s) | 314 |
| TspRI | CASTG | 2 cut(s) | 455, 997 |
| VpaK11BI | GGWCC | 2 cut(s) | 44, 171 |
| XceI | RCATGY | 1 cut(s) | 578 |
| XhoI | CTCGAG | 1 cut(s) | 716 |
| XmiI | GTMKAC | 2 cut(s) | 644, 1084 |