Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Forward (+)

18674449 .. 18676078

Gene Structure 1630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAAAAGCAATCTCATACTGTTGCATTTCCTGGAATAAGGAGAGGTGCATGGACTCCTGAGGAGGACAAGAAGCTCCTTGCTTTCGTTCAACAACATGGCCATGGAAGCTGGCGTTCCTTCCCCAGAAAGCTGCTGCTAATGGAGATAGGCATGTGTAAATGTAGGTGGTCCGCCATAGCTGCACAGTTACCAAAGAGAACAGACAATGAGATAAAGAACTACTGGAACACACATCTAAAGAAGAGGTTAGCCAAGATAGGGTTTGATCCTGTAACCCACAAGCCCAAGACCGCCATCCTCGCCTCTGCTGATGGCGGCGACCCGAAGAACCTCTCAAACCTCAGCCACATAGCTCAGTGGGAAACTGCTCGGCTTCAAGCAGAAGCTAGATTCTCCAGACCGTCAAAACTACTCATCAGTCATGACCAACCTCCTAGATTTGGACCCGTGCCTGTACCACAATGCCTTGACATGAACGAAAGAGCACGAGAAATACAGTTACTGTTAAAGTCAATATTAGCTGCAGACAGTGGTGCCCAACTAGGTGGTGGTATTGGTAGTACCGCCACCCACGTTCGGCATGAGGTTCCTTCATTTGGTACAGTTGATGTTGAGGGCGTGCTTACTAATTGTGATCAGTTTGAGGCTCCAAGAACCAGTACATCAGTTCTGGGTTTTGATGAAGTTTTTGGGAAGTCCGGTACTAATAATGACTATGGTGAACTGTTGGAGGCATTACTACAGCACAACCATAACAGTACTGGATTTGAAGTTGGGGATGCTTGGAGTTTAGAACAACGTGCAACAGTAATGATGAGCGAGCCGGGAACAACGTACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

281

Amino Acids

31.11

Weight (kDa)

7.77

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 40	1.7e-07	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 90	3.8e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	47 - 80	1.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	536
AciI	CCGC	4 cut(s)	174, 294, 318, 567
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	100
AfaI	GTAC	7 cut(s)	459, 565, 604, 664, 706, 763, 839
AfiI	CCNNNNNNNGG	4 cut(s)	261, 443, 579, 599
AgsI	TTSAA	3 cut(s)	92, 380, 773
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	7 cut(s)	76, 111, 133, 182, 356, 389, 524
AluI	AGCT	7 cut(s)	76, 111, 133, 182, 356, 389, 524
Alw21I	GWGCWC	1 cut(s)	490
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	1 cut(s)	505
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	4 cut(s)	133, 136, 182, 524
AspS9I	GGNCC	2 cut(s)	171, 446
AsuC2I	CCSGG	1 cut(s)	828
AsuHPI	GGTGA	1 cut(s)	734
AvaII	GGWCC	2 cut(s)	171, 446
AxyI	CCTNAGG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	541
BalI	TGGCCA	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	536
BauI	CACGAG	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	490
BbvCI	CCTCAGC	1 cut(s)	344
BbvI	GCAGC	4 cut(s)	120, 123, 169, 511
BccI	CCATC	2 cut(s)	305, 308
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	637
BcnI	CCSGG	1 cut(s)	828
BfaI	CTAG	3 cut(s)	390, 438, 545
BfmI	CTRYAG	2 cut(s)	525, 743
BisI	GCNGC	5 cut(s)	134, 137, 183, 319, 525
BlsI	GCNGC	5 cut(s)	135, 138, 184, 320, 526
BmcAI	AGTACT	1 cut(s)	763
Bme1390I	CCNGG	2 cut(s)	33, 828
Bme18I	GGWCC	2 cut(s)	171, 446
BmgT120I	GGNCC	2 cut(s)	171, 446
BmiI	GGNNCC	4 cut(s)	448, 538, 591, 651
BmrFI	CCNGG	2 cut(s)	33, 828
BmsI	GCATC	1 cut(s)	772
BpmI	CTGGAG	1 cut(s)	382
Bpu10I	CCTNAGC	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	828
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	4 cut(s)	261, 443, 579, 599
Bse1I	ACTGG	3 cut(s)	230, 660, 769
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	2 cut(s)	297, 787
BseLI	CCNNNNNNNGG	4 cut(s)	261, 443, 579, 599
BseMII	CTCAG	3 cut(s)	51, 358, 371
BseNI	ACTGG	3 cut(s)	230, 660, 769
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	4 cut(s)	120, 123, 169, 511
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	490
BsiSI	CCGG	2 cut(s)	702, 827
BslI	CCNNNNNNNGG	4 cut(s)	261, 443, 579, 599
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	490, 541
Bsp143I	GATC	2 cut(s)	268, 637
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	4 cut(s)	174, 294, 318, 567
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	3 cut(s)	52, 357, 370
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	4 cut(s)	448, 538, 591, 651
BspMAI	CTGCAG	1 cut(s)	529
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	536
BsrI	ACTGG	3 cut(s)	230, 660, 769
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	268, 637
BssSI	CACGAG	1 cut(s)	489
BssT1I	CCWWGG	1 cut(s)	103
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	239
BstC8I	GCNNGC	3 cut(s)	113, 623, 824
BstDEI	CTNAG	3 cut(s)	60, 344, 357
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	297, 787
BstKTI	GATC	2 cut(s)	271, 640
BstMBI	GATC	2 cut(s)	268, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 182, 302
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	2 cut(s)	31, 826
BstSFI	CTRYAG	2 cut(s)	525, 743
BstSLI	GKGCMC	1 cut(s)	541
BstV1I	GCAGC	4 cut(s)	120, 123, 169, 511
BstXI	CCANNNNNNTGG	1 cut(s)	548
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	297, 787
BtsIMutI	CAGTG	2 cut(s)	365, 538
Cac8I	GCNNGC	3 cut(s)	113, 623, 824
CaiI	CAGNNNCTG	1 cut(s)	505
CciI	TCATGA	1 cut(s)	424
Cfr13I	GGNCC	2 cut(s)	171, 446
Csp6I	GTAC	7 cut(s)	458, 564, 603, 663, 705, 762, 838
CviAII	CATG	7 cut(s)	51, 98, 104, 154, 425, 475, 584
CviQI	GTAC	7 cut(s)	458, 564, 603, 663, 705, 762, 838
DdeI	CTNAG	3 cut(s)	60, 344, 357
DpnI	GATC	2 cut(s)	270, 639
DpnII	GATC	2 cut(s)	268, 637
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
EciI	GGCGGA	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	171, 446
Eco81I	CCTNAGG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	7 cut(s)	54, 101, 107, 157, 428, 478, 587
FatI	CATG	7 cut(s)	50, 97, 103, 153, 424, 474, 583
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	5 cut(s)	134, 137, 183, 319, 525
FokI	GGATG	2 cut(s)	284, 794
Fsp4HI	GCNGC	5 cut(s)	134, 137, 183, 319, 525
FspBI	CTAG	3 cut(s)	390, 438, 545
GluI	GCNGC	5 cut(s)	134, 137, 183, 319, 525
GsuI	CTGGAG	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	702, 827
Hin1II	CATG	7 cut(s)	54, 101, 107, 157, 428, 478, 587
HinfI	GANTC	2 cut(s)	55, 393
HpaII	CCGG	2 cut(s)	702, 827
HphI	GGTGA	1 cut(s)	734
Hpy166II	GTNNAC	1 cut(s)	725
Hpy188III	TCNNGA	3 cut(s)	59, 399, 425
Hpy8I	GTNNAC	1 cut(s)	725
HpyAV	CCTTC	2 cut(s)	130, 603
HpyCH4IV	ACGT	3 cut(s)	576, 802, 836
HpyCH4V	TGCA	5 cut(s)	26, 50, 185, 527, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 182, 302
HpyF3I	CTNAG	3 cut(s)	60, 344, 357
HpySE526I	ACGT	3 cut(s)	576, 802, 836
Hsp92II	CATG	7 cut(s)	54, 101, 107, 157, 428, 478, 587
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	2 cut(s)	268, 637
LmnI	GCTCC	2 cut(s)	81, 655
Lsp1109I	GCAGC	4 cut(s)	120, 123, 169, 511
LweI	GCATC	1 cut(s)	772
MaeI	CTAG	3 cut(s)	390, 438, 545
MaeII	ACGT	3 cut(s)	576, 802, 836
MaeIII	GTNAC	3 cut(s)	189, 274, 501
MalI	GATC	2 cut(s)	270, 639
MboI	GATC	2 cut(s)	268, 637
MboII	GAAGA	2 cut(s)	256, 340
MhlI	GDGCHC	2 cut(s)	490, 541
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	1 cut(s)	631
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	711
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	509
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	2 cut(s)	702, 827
MspR9I	CCNGG	2 cut(s)	33, 828
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	108, 182, 302
NciI	CCSGG	1 cut(s)	828
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	268, 637
NlaIII	CATG	7 cut(s)	54, 101, 107, 157, 428, 478, 587
NlaIV	GGNNCC	4 cut(s)	448, 538, 591, 651
NmeAIII	GCCGAG	1 cut(s)	352
NspI	RCATGY	1 cut(s)	157
PagI	TCATGA	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	393
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	135, 138, 184, 320, 526
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	4 cut(s)	448, 538, 591, 651
PspPI	GGNCC	2 cut(s)	171, 446
PstI	CTGCAG	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	505
RsaI	GTAC	7 cut(s)	459, 565, 604, 664, 706, 763, 839
RsaNI	GTAC	7 cut(s)	458, 564, 603, 663, 705, 762, 838
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	5 cut(s)	134, 137, 183, 319, 525
Sau3AI	GATC	2 cut(s)	268, 637
Sau96I	GGNCC	2 cut(s)	171, 446
ScaI	AGTACT	1 cut(s)	763
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	33, 828
SduI	GDGCHC	2 cut(s)	490, 541
SfaNI	GCATC	1 cut(s)	772
SfcI	CTRYAG	2 cut(s)	525, 743
SinI	GGWCC	2 cut(s)	171, 446
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	1 cut(s)	631
SsiI	CCGC	4 cut(s)	174, 294, 318, 567
SspI	AATATT	1 cut(s)	519
SspMI	CTAG	3 cut(s)	390, 438, 545
StyD4I	CCNGG	2 cut(s)	31, 826
StyI	CCWWGG	1 cut(s)	103
TaiI	ACGT	3 cut(s)	579, 805, 839
TasI	AATT	1 cut(s)	631
TatI	WGTACW	2 cut(s)	662, 761
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	393
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	2 cut(s)	365, 538
TseI	GCWGC	4 cut(s)	133, 136, 182, 524
TspDTI	ATGAA	3 cut(s)	491, 585, 699
TspRI	CASTG	2 cut(s)	365, 538
VpaK11BI	GGWCC	2 cut(s)	171, 446
XceI	RCATGY	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	2 cut(s)	548, 761
XspI	CTAG	3 cut(s)	390, 438, 545
ZrmI	AGTACT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.