Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Forward (+)

57552161 .. 57555487

Gene Structure 3327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0444100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2790 bp

ATGGGGGTTGTTCTTGATGACCTTAACTCAGTGAGGGGCAAGATTTGGTTGAGCTGCATCAAAATGGCCCTGTCAGACTTCTATTTTTATCATCCTCACTACAAAACTTGGCTGGTCTTGAACACTAGGGACTCGAAGAAGAATGTTGTCGCTGCAGCTGCCTCAGCACTAGATCTGATAAAGAATCATGAAGTACCAGCCATCATCGGGCCAGTGACATCGATGGAGACAAGCTTTGTCATTAATCTCGGAGACCAAACTCATGTGCCCATCATATCATTTTCTGCAACAAGTCCTTCTCTTACTTCGCTCCGGAGCTCCTACTTTTTCCAATTTGCACAGAATGACACATCTCAAGTGAAAGCTATAAGTGCGGTTATCAAAAACTTTGGGTGGAGACTAGTTGTGCTCATATACATAGACACTTCGTATGGGGAGGCAATCATACCATTTTTAACCGATGCCTTACAAGAAGTGGGTATTGGTGTCTCCTACAGGAGTGTCATTTCCCCCTCTGCAGCCGATGATCAAATTGCAAACGAGCTTTACAAGTTGATGACCATGCAAACTAGAGTCTTCATTGTCCATATGACAACCAATCTATGCTCTAAGCTATTTGCCAAGGCAGAAGAGATTGGAATGATGGTTGAAGGCTATGTTTGGTTAACCACTAATGGGATTACTAATCGTTTAACTTCAATGAATTCTTCAGTCATCCATTCCATGAATGGAGTTATAGGTCTGCAAACTTATGTCCAGAAAACAAGAGAGCTGGAAGAATTCAATCTCCGGTGGAAAAGGCAGTTCCAAAAAGACTATCCACACATCGTTGGTGCTGAATTGGATGTTTTCGGATTTTGGGCTTATGATGCTACTTTTGCCATAGCAATGGCAATTGAACAAGTGATTGGGACTACAAGTAGTTTTGGTTTCCAAAAGCCAAATGCCTCCAACAAGTCCACAGATATTCTTGAAAGTTTTCCCATCTCTCCATATGGTCCAAAACTTTGCCAAGCCCTATCGACTACTAGATTCCCAGGCATTGCTGGAGATTTCATGCTCATTGATGGGCAACTTCAATCATCCAATTTTCGGATAATTAATGTCAACGGCCGTGGAGCGAGAACAATTGGATTTTGGACACCACTGCATGGACTTGTAAGCAAAATGAGTTCCACAAATTCCACATGCCATCTTGGACCGGTTATATGGCCAGGAGAGTCTCTCTCTGTTCCCAAAGGGTGGGAGATCCCAACAAAGGGGAAGAAGTTGAGAATAGGAGTTCCTGTTAGGGATGGGTTTACTGAGCTTGTTAAGGTAACAATAGATCCAACCACCAACACAACGGATGTTACCGGATTCAGTATCGATGTATTTAAGGCCGTAGTTGACATGTTACCATATGCTCTTCCTTATGAGTTCATTCCCTTTGCAAAGCCTGATGGCACCAAAGCTGGCACTTACAATGACTTGTGCTATCAAGTCTATCTTGGGAATTTTGATGCTGTAGTCGGAGATACAACAATTCGAGCAAACAGGTCTCTGTATGTGGACTTTACGATGCCATATGCAGAAGCCGGTGTAGTAATGGTTGTGCCCGTCATAGACACAAACAAAAGAAGTGCATGGGCTTTCTTCAAGCCATGGCAATGGGACCTTTGGCTTGCAACTCTTATTTCCTTGTTGTTAGTAGGTTTTGTGGTTTGGGTCGTTCAGCATCGAACTAATGAAGATTTTCAAGGCACTACCGCACAACAAGAAGTTGGCAATGTTATATGGTTCTCCTTCTCAACCATGGTTTTTGCTCAACGAGAGAGAGTGGATACCAACTTGGCTAGATTTGTTATGATAATATGGGTATTTGTTGTGCTAGTACTGACAATTAATTACCAAGCAAGTCTAACCTCTATATATACGGTCGAAATACTCGAGCCAACTGTTACCAATATCAAGGATCTATTGAGGAAGGGGGAAAACATCGGCTACATACCAACTGCTTATACTTACGAGATGTTGAAGCAAGTAGGTTTTGAAGATTCCAAGCTTATGGCTTTGGGAACTATGGAAGCAATTGATGAAGCTCTTTCGAAAGGGAGTGCAAACAGTGGCATTGCTGCTTTTGTTGATGAAACTCCCTACATGAAGCTTTTCCTTGCAAGATACTGCAACAAATATAGTATGATTGGCCCCATATTTAAAACCGATGGTCATGGCTTTGTATTTCCAAAACGCTCTCCTCTTCTACCCGATGTTTCCCAGGCAGTCCTAAATGTCACCGGAGGAGAGAAGATAATGAATATCGAAAACAAATGGTTCAAGAAAGACAGCAATTGTCAAGACTTTAGTAACCCAAAATTTTCTAGCAATAGACTTGATTTTAAAAACTTTCGGGTCCTATTTTTCATTACTTGGGTGGCTTCAGGAGTGGCTCTCATCCTATATTTAGTTCGGTTCAGTTACAAGTATAGGGACGTTTGGAATTCTGAAACCTCTACGCTTAGAAGGATTGGGGCCATGTTGGGAAAGTTTTATGAAATAGACCCTTCTAGAAGCAACCAGAAAGCGGATGTAGTACTTACAGCCTCTACAAACCTCAATGGCACAGAAAGTCCAGAACTCGGCCAGAATTGGAACCAAACAAATACGAATTCTGTGTTTTCTTCTGATTCTGAAGAGCAACGAGCACCCTCAACTGATCGAGCATCTCCAGAAATAGCTACTACATCTACTGAGTCTGCTGCTGCAGTTCAAGAAATGCATTCAATTACTCCAGCTGAAACAGCTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

929

Amino Acids

103.72

Weight (kDa)

6.18

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	17 - 371	2.6e-80	Receptor family ligand binding region
Peripla_BP_6	PF13458	40 - 307	7.5e-18	Periplasmic binding protein
Lig_chan-Glu_bd	PF10613	445 - 532	1.9e-06	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	447 - 773	7.4e-08	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	550 - 806	4.2e-32	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1445
AccB7I	CCANNNNNTGG	2 cut(s)	1151, 1242
AccIII	TCCGGA	1 cut(s)	312
AciI	CCGC	3 cut(s)	374, 1749, 2564
AclWI	GGATC	3 cut(s)	1243, 1322, 1962
AcoI	YGGCCR	3 cut(s)	1111, 1211, 2620
AcsI	RAATTY	7 cut(s)	703, 779, 1180, 1495, 2354, 2479, 2647
AcuI	CTGAAG	3 cut(s)	693, 2403, 2691
AfaI	GTAC	3 cut(s)	195, 1875, 2574
AfiI	CCNNNNNNNGG	9 cut(s)	207, 675, 1092, 1151, 1242, 1258, 1259, 2563, 2618
AflIII	ACRYGT	1 cut(s)	1392
AgeI	ACCGGT	1 cut(s)	1201
AhlI	ACTAGT	1 cut(s)	400
AjnI	CCWGG	3 cut(s)	1036, 1213, 2256
AjuI	GAANNNNNNNTTGG	4 cut(s)	465, 497, 891, 923
Alw21I	GWGCWC	3 cut(s)	320, 411, 2686
Alw26I	GTCTC	6 cut(s)	221, 246, 391, 493, 1227, 1545
AlwI	GGATC	3 cut(s)	1243, 1322, 1962
Ama87I	CYCGRG	1 cut(s)	1928
Aor13HI	TCCGGA	1 cut(s)	312
AoxI	GGCC	8 cut(s)	66, 209, 1111, 1211, 1380, 2185, 2511, 2620
ApeKI	GCWGC	8 cut(s)	54, 152, 155, 158, 518, 2114, 2738, 2741
ApoI	RAATTY	7 cut(s)	703, 779, 1180, 1495, 2354, 2479, 2647
AseI	ATTAAT	3 cut(s)	243, 1101, 1884
AsiGI	ACCGGT	1 cut(s)	1201
Asp700I	GAANNNNTTC	3 cut(s)	978, 1734, 2147
AspS9I	GGNCC	8 cut(s)	67, 209, 998, 1199, 1654, 2186, 2392, 2511
AsuHPI	GGTGA	1 cut(s)	2266
AsuII	TTCGAA	1 cut(s)	2087
AvaI	CYCGRG	1 cut(s)	1928
AvaII	GGWCC	4 cut(s)	998, 1199, 1654, 2392
BaeGI	GKGCMC	2 cut(s)	270, 1599
BalI	TGGCCA	1 cut(s)	1213
BanI	GGYRCC	1 cut(s)	1445
BanII	GRGCYC	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	568
Bbv12I	GWGCWC	3 cut(s)	320, 411, 2686
BbvCI	CCTCAGC	1 cut(s)	163
BbvI	GCAGC	8 cut(s)	41, 139, 145, 167, 530, 2101, 2725, 2728
BceAI	ACGGC	3 cut(s)	1098, 1126, 1367
BciT130I	CCWGG	3 cut(s)	1038, 1215, 2258
BciVI	GTATCC	1 cut(s)	1816
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	6 cut(s)	221, 246, 391, 493, 1227, 1545
BcuI	ACTAGT	1 cut(s)	400
BfaI	CTAG	9 cut(s)	126, 170, 401, 570, 1029, 1836, 1871, 2361, 2547
BfmI	CTRYAG	5 cut(s)	153, 493, 516, 1506, 2742
BfuI	GTATCC	1 cut(s)	1816
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	8 cut(s)	55, 153, 156, 159, 519, 2115, 2739, 2742
BlsI	GCNGC	8 cut(s)	56, 154, 157, 160, 520, 2116, 2740, 2743
BmcAI	AGTACT	2 cut(s)	1875, 2574
Bme1390I	CCNGG	3 cut(s)	1038, 1215, 2258
Bme18I	GGWCC	4 cut(s)	998, 1199, 1654, 2392
BmeT110I	CYCGRG	1 cut(s)	1928
BmgT120I	GGNCC	8 cut(s)	67, 209, 998, 1199, 1654, 2186, 2392, 2511
BmiI	GGNNCC	6 cut(s)	1447, 1655, 2188, 2393, 2512, 2633
BmrFI	CCNGG	3 cut(s)	1038, 1215, 2258
BmsI	GCATC	7 cut(s)	66, 451, 859, 1492, 1551, 1726, 2711
BpiI	GAAGAC	1 cut(s)	568
BplI	GAGNNNNNCTC	6 cut(s)	1209, 1241, 1211, 1243, 2415, 2447
BpmI	CTGGAG	3 cut(s)	1068, 2691, 2754
Bpu10I	CCTNAGC	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	2087
BpuEI	CTTGAG	1 cut(s)	339
Bsa29I	ATCGAT	2 cut(s)	221, 1368
BsaI	GGTCTC	2 cut(s)	246, 1545
BsaJI	CCNNGG	6 cut(s)	621, 1036, 1114, 1643, 1794, 2256
BsaWI	WCCGGW	5 cut(s)	312, 789, 1201, 1355, 2276
BsaXI	ACNNNNNCTCC	2 cut(s)	1272, 1302
Bsc4I	CCNNNNNNNGG	9 cut(s)	207, 675, 1092, 1151, 1242, 1258, 1259, 2563, 2618
Bse118I	RCCGGY	2 cut(s)	1201, 1577
Bse1I	ACTGG	1 cut(s)	212
Bse3DI	GCAATG	5 cut(s)	894, 1041, 1655, 1774, 2109
BseAI	TCCGGA	1 cut(s)	312
BseBI	CCWGG	3 cut(s)	1038, 1215, 2258
BseCI	ATCGAT	2 cut(s)	221, 1368
BseDI	CCNNGG	6 cut(s)	621, 1036, 1114, 1643, 1794, 2256
BseGI	GGATG	8 cut(s)	91, 714, 850, 1082, 1300, 1354, 2433, 2572
BseLI	CCNNNNNNNGG	9 cut(s)	207, 675, 1092, 1151, 1242, 1258, 1259, 2563, 2618
BseMI	GCAATG	5 cut(s)	894, 1041, 1655, 1774, 2109
BseMII	CTCAG	4 cut(s)	42, 177, 1296, 2721
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	2 cut(s)	2226, 2295
BseSI	GKGCMC	2 cut(s)	270, 1599
BseX3I	CGGCCG	1 cut(s)	1111
BseXI	GCAGC	8 cut(s)	41, 139, 145, 167, 530, 2101, 2725, 2728
Bsh1285I	CGRYCG	2 cut(s)	1114, 1920
BshFI	GGCC	8 cut(s)	68, 211, 1113, 1213, 1382, 2187, 2513, 2622
BshNI	GGYRCC	1 cut(s)	1445
BshTI	ACCGGT	1 cut(s)	1201
BshVI	ATCGAT	2 cut(s)	221, 1368
BsiEI	CGRYCG	2 cut(s)	1114, 1920
BsiHKAI	GWGCWC	3 cut(s)	320, 411, 2686
BsiHKCI	CYCGRG	1 cut(s)	1928
BsiSI	CCGG	6 cut(s)	313, 790, 1202, 1356, 1578, 2277
BslFI	GGGAC	4 cut(s)	143, 925, 1667, 2483
BslI	CCNNNNNNNGG	9 cut(s)	207, 675, 1092, 1151, 1242, 1258, 1259, 2563, 2618
BsmAI	GTCTC	6 cut(s)	221, 246, 391, 493, 1227, 1545
BsmFI	GGGAC	4 cut(s)	143, 925, 1667, 2483
BsmI	GAATGC	1 cut(s)	2758
BsnI	GGCC	8 cut(s)	68, 211, 1113, 1213, 1382, 2187, 2513, 2622
Bso31I	GGTCTC	2 cut(s)	246, 1545
BsoBI	CYCGRG	1 cut(s)	1928
Bsp119I	TTCGAA	1 cut(s)	2087
Bsp1286I	GDGCHC	5 cut(s)	270, 320, 411, 1599, 2686
Bsp13I	TCCGGA	1 cut(s)	312
Bsp143I	GATC	6 cut(s)	172, 526, 1248, 1327, 1954, 2695
Bsp19I	CCATGG	2 cut(s)	1643, 1794
BspACI	CCGC	3 cut(s)	374, 1749, 2564
BspANI	GGCC	8 cut(s)	68, 211, 1113, 1213, 1382, 2187, 2513, 2622
BspCNI	CTCAG	4 cut(s)	41, 176, 1297, 2722
BspDI	ATCGAT	2 cut(s)	221, 1368
BspEI	TCCGGA	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	6 cut(s)	1447, 1655, 2188, 2393, 2512, 2633
BspMAI	CTGCAG	3 cut(s)	157, 520, 2746
BspPI	GGATC	3 cut(s)	1243, 1322, 1962
BspQI	GCTCTTC	2 cut(s)	1413, 2667
BspT104I	TTCGAA	1 cut(s)	2087
BspT107I	GGYRCC	1 cut(s)	1445
BspTNI	GGTCTC	2 cut(s)	246, 1545
BsrDI	GCAATG	5 cut(s)	894, 1041, 1655, 1774, 2109
BsrFI	RCCGGY	2 cut(s)	1201, 1577
BsrI	ACTGG	1 cut(s)	212
BssAI	RCCGGY	2 cut(s)	1201, 1577
BssECI	CCNNGG	6 cut(s)	621, 1036, 1114, 1643, 1794, 2256
BssMI	GATC	6 cut(s)	172, 526, 1248, 1327, 1954, 2695
BssT1I	CCWWGG	3 cut(s)	621, 1643, 1794
Bst2UI	CCWGG	3 cut(s)	1038, 1215, 2258
Bst4CI	ACNGT	3 cut(s)	1918, 1939, 2105
Bst6I	CTCTTC	4 cut(s)	624, 1413, 2244, 2667
BstBI	TTCGAA	1 cut(s)	2087
BstC8I	GCNNGC	2 cut(s)	1456, 1665
BstDEI	CTNAG	6 cut(s)	28, 163, 609, 1305, 2498, 2730
BstDSI	CCRYGG	3 cut(s)	1114, 1643, 1794
BstF5I	GGATG	8 cut(s)	91, 714, 850, 1082, 1300, 1354, 2433, 2572
BstKTI	GATC	6 cut(s)	175, 529, 1251, 1330, 1957, 2698
BstMAI	GTCTC	6 cut(s)	221, 246, 391, 493, 1227, 1545
BstMBI	GATC	6 cut(s)	172, 526, 1248, 1327, 1954, 2695
BstMCI	CGRYCG	2 cut(s)	1114, 1920
BstMWI	GCNNNNNNNGC	6 cut(s)	158, 164, 371, 869, 878, 2780
BstNI	CCWGG	3 cut(s)	1038, 1215, 2258
BstNSI	RCATGY	2 cut(s)	1191, 1396
BstSCI	CCNGG	3 cut(s)	1036, 1213, 2256
BstSFI	CTRYAG	5 cut(s)	153, 493, 516, 1506, 2742
BstSLI	GKGCMC	2 cut(s)	270, 1599
BstV1I	GCAGC	8 cut(s)	41, 139, 145, 167, 530, 2101, 2725, 2728
BstV2I	GAAGAC	1 cut(s)	568
BstX2I	RGATCY	4 cut(s)	172, 1248, 1327, 1954
BstXI	CCANNNNNNTGG	3 cut(s)	889, 1650, 2047
BstYI	RGATCY	4 cut(s)	172, 1248, 1327, 1954
BstZI	CGGCCG	1 cut(s)	1111
Bsu15I	ATCGAT	2 cut(s)	221, 1368
BsuI	GTATCC	1 cut(s)	1816
BsuRI	GGCC	8 cut(s)	68, 211, 1113, 1213, 1382, 2187, 2513, 2622
BsuTUI	ATCGAT	2 cut(s)	221, 1368
BtgI	CCRYGG	3 cut(s)	1114, 1643, 1794
BtsCI	GGATG	8 cut(s)	91, 714, 850, 1082, 1300, 1354, 2433, 2572
BtsI	GCAGTG	1 cut(s)	1145
BtsIMutI	CAGTG	4 cut(s)	36, 219, 1145, 2110
Cac8I	GCNNGC	2 cut(s)	1456, 1665
CciI	TCATGA	1 cut(s)	187
Cfr10I	RCCGGY	2 cut(s)	1201, 1577
Cfr13I	GGNCC	8 cut(s)	67, 209, 998, 1199, 1654, 2186, 2392, 2511
ClaI	ATCGAT	2 cut(s)	221, 1368
Csp6I	GTAC	3 cut(s)	194, 1874, 2573
CspAI	ACCGGT	1 cut(s)	1201
CspCI	CAANNNNNGTGG	2 cut(s)	1096, 1131
CviQI	GTAC	3 cut(s)	194, 1874, 2573
DdeI	CTNAG	6 cut(s)	28, 163, 609, 1305, 2498, 2730
DpnI	GATC	6 cut(s)	174, 528, 1250, 1329, 1956, 2697
DpnII	GATC	6 cut(s)	172, 526, 1248, 1327, 1954, 2695
DraI	TTTAAA	2 cut(s)	2197, 2380
EaeI	YGGCCR	3 cut(s)	1111, 1211, 2620
EagI	CGGCCG	1 cut(s)	1111
Eam1104I	CTCTTC	4 cut(s)	624, 1413, 2244, 2667
EarI	CTCTTC	4 cut(s)	624, 1413, 2244, 2667
Ecl136II	GAGCTC	1 cut(s)	318
EclXI	CGGCCG	1 cut(s)	1111
Eco130I	CCWWGG	3 cut(s)	621, 1643, 1794
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	2 cut(s)	246, 1545
Eco47I	GGWCC	4 cut(s)	998, 1199, 1654, 2392
Eco52I	CGGCCG	1 cut(s)	1111
Eco53kI	GAGCTC	1 cut(s)	318
Eco57I	CTGAAG	3 cut(s)	693, 2403, 2691
Eco88I	CYCGRG	1 cut(s)	1928
EcoICRI	GAGCTC	1 cut(s)	318
EcoO109I	RGGNCCY	2 cut(s)	1654, 2392
EcoRI	GAATTC	4 cut(s)	703, 779, 2479, 2647
EcoRII	CCWGG	3 cut(s)	1036, 1213, 2256
EcoT14I	CCWWGG	3 cut(s)	621, 1643, 1794
EcoT22I	ATGCAT	1 cut(s)	2760
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	3 cut(s)	621, 1643, 1794
FalI	AAGNNNNNCTT	2 cut(s)	1473, 1505
FaqI	GGGAC	4 cut(s)	143, 925, 1667, 2483
FauNDI	CATATG	4 cut(s)	588, 994, 1402, 1567
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	8 cut(s)	55, 153, 156, 159, 519, 2115, 2739, 2742
FokI	GGATG	8 cut(s)	78, 701, 857, 1069, 1307, 1361, 2420, 2579
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	8 cut(s)	55, 153, 156, 159, 519, 2115, 2739, 2742
FspBI	CTAG	9 cut(s)	126, 170, 401, 570, 1029, 1836, 1871, 2361, 2547
GluI	GCNGC	8 cut(s)	55, 153, 156, 159, 519, 2115, 2739, 2742
GsuI	CTGGAG	3 cut(s)	1068, 2691, 2754
HaeIII	GGCC	8 cut(s)	68, 211, 1113, 1213, 1382, 2187, 2513, 2622
HapII	CCGG	6 cut(s)	313, 790, 1202, 1356, 1578, 2277
HincII	GTYRAC	3 cut(s)	666, 1108, 1390
HindII	GTYRAC	3 cut(s)	666, 1108, 1390
HindIII	AAGCTT	3 cut(s)	232, 2042, 2144
HinfI	GANTC	9 cut(s)	131, 184, 573, 1032, 1220, 1359, 2036, 2666, 2732
HpaI	GTTAAC	1 cut(s)	666
HpaII	CCGG	6 cut(s)	313, 790, 1202, 1356, 1578, 2277
HphI	GGTGA	1 cut(s)	2266
Hpy166II	GTNNAC	6 cut(s)	666, 960, 1108, 1302, 1390, 1552
Hpy188I	TCNGA	9 cut(s)	76, 177, 251, 854, 1095, 1514, 2485, 2665, 2671
Hpy8I	GTNNAC	6 cut(s)	666, 960, 1108, 1302, 1390, 1552
HpyAV	CCTTC	6 cut(s)	306, 644, 1795, 1960, 2496, 2553
HpyCH4III	ACNGT	3 cut(s)	1918, 1939, 2105
HpyCH4IV	ACGT	1 cut(s)	2472
HpyF10VI	GCNNNNNNNGC	6 cut(s)	158, 164, 371, 869, 878, 2780
HpyF3I	CTNAG	6 cut(s)	28, 163, 609, 1305, 2498, 2730
HpySE526I	ACGT	1 cut(s)	2472
Kpn2I	TCCGGA	1 cut(s)	312
Ksp22I	TGATCA	1 cut(s)	526
KspAI	GTTAAC	1 cut(s)	666
Kzo9I	GATC	6 cut(s)	172, 526, 1248, 1327, 1954, 2695
LguI	GCTCTTC	2 cut(s)	1413, 2667
LmnI	GCTCC	4 cut(s)	315, 315, 323, 1118
Lsp1109I	GCAGC	8 cut(s)	41, 139, 145, 167, 530, 2101, 2725, 2728
LweI	GCATC	7 cut(s)	66, 451, 859, 1492, 1551, 1726, 2711
MaeI	CTAG	9 cut(s)	126, 170, 401, 570, 1029, 1836, 1871, 2361, 2547
MaeII	ACGT	1 cut(s)	2472
MaeIII	GTNAC	8 cut(s)	214, 1318, 1351, 1395, 1939, 2272, 2345, 2456
MalI	GATC	6 cut(s)	174, 528, 1250, 1329, 1956, 2697
MboI	GATC	6 cut(s)	172, 526, 1248, 1327, 1954, 2695
MfeI	CAATTG	4 cut(s)	894, 1128, 2070, 2329
MflI	RGATCY	4 cut(s)	172, 1248, 1327, 1954
MhlI	GDGCHC	5 cut(s)	270, 320, 411, 1599, 2686
MlsI	TGGCCA	1 cut(s)	1213
MluNI	TGGCCA	1 cut(s)	1213
MlyI	GAGTC	4 cut(s)	125, 582, 1229, 2741
MmeI	TCCRAC	3 cut(s)	975, 1355, 1492
Mox20I	TGGCCA	1 cut(s)	1213
Mph1103I	ATGCAT	1 cut(s)	2760
MroI	TCCGGA	1 cut(s)	312
MroXI	GAANNNNTTC	3 cut(s)	978, 1734, 2147
MscI	TGGCCA	1 cut(s)	1213
MslI	CAYNNNNRTG	3 cut(s)	62, 887, 1648
Msp20I	TGGCCA	1 cut(s)	1213
MspA1I	CMGCKG	2 cut(s)	158, 2774
MspI	CCGG	6 cut(s)	313, 790, 1202, 1356, 1578, 2277
MspR9I	CCNGG	3 cut(s)	1038, 1215, 2258
MunI	CAATTG	4 cut(s)	894, 1128, 2070, 2329
Mva1269I	GAATGC	1 cut(s)	2758
MvaI	CCWGG	3 cut(s)	1038, 1215, 2258
MwoI	GCNNNNNNNGC	6 cut(s)	158, 164, 371, 869, 878, 2780
NcoI	CCATGG	2 cut(s)	1643, 1794
NdeI	CATATG	4 cut(s)	588, 994, 1402, 1567
NdeII	GATC	6 cut(s)	172, 526, 1248, 1327, 1954, 2695
NlaIV	GGNNCC	6 cut(s)	1447, 1655, 2188, 2393, 2512, 2633
NmeAIII	GCCGAG	1 cut(s)	2598
NmuCI	GTSAC	2 cut(s)	214, 2272
NsiI	ATGCAT	1 cut(s)	2760
NspI	RCATGY	2 cut(s)	1191, 1396
NspV	TTCGAA	1 cut(s)	2087
PaeR7I	CTCGAG	1 cut(s)	1928
PagI	TCATGA	1 cut(s)	187
PciI	ACATGT	1 cut(s)	1392
PciSI	GCTCTTC	2 cut(s)	1413, 2667
PcsI	WCGNNNNNNNCGW	1 cut(s)	1926
PctI	GAATGC	1 cut(s)	2758
PdmI	GAANNNNTTC	3 cut(s)	978, 1734, 2147
PfeI	GAWTC	5 cut(s)	184, 1032, 1359, 2036, 2666
PflMI	CCANNNNNTGG	2 cut(s)	1151, 1242
PinAI	ACCGGT	1 cut(s)	1201
PkrI	GCNGC	8 cut(s)	56, 154, 157, 160, 520, 2116, 2740, 2743
PleI	GAGTC	4 cut(s)	125, 581, 1228, 2740
PpsI	GAGTC	4 cut(s)	125, 581, 1228, 2740
PpuMI	RGGWCCY	2 cut(s)	1654, 2392
PscI	ACATGT	1 cut(s)	1392
PshBI	ATTAAT	3 cut(s)	243, 1101, 1884
Psp124BI	GAGCTC	1 cut(s)	320
Psp5II	RGGWCCY	2 cut(s)	1654, 2392
Psp6I	CCWGG	3 cut(s)	1036, 1213, 2256
PspGI	CCWGG	3 cut(s)	1036, 1213, 2256
PspN4I	GGNNCC	6 cut(s)	1447, 1655, 2188, 2393, 2512, 2633
PspPI	GGNCC	8 cut(s)	67, 209, 998, 1199, 1654, 2186, 2392, 2511
PspPPI	RGGWCCY	2 cut(s)	1654, 2392
PspXI	VCTCGAGB	1 cut(s)	1928
PstI	CTGCAG	3 cut(s)	157, 520, 2746
PsuI	RGATCY	4 cut(s)	172, 1248, 1327, 1954
PvuII	CAGCTG	2 cut(s)	158, 2774
RsaI	GTAC	3 cut(s)	195, 1875, 2574
RsaNI	GTAC	3 cut(s)	194, 1874, 2573
RseI	CAYNNNNRTG	3 cut(s)	62, 887, 1648
SacI	GAGCTC	1 cut(s)	320
SapI	GCTCTTC	2 cut(s)	1413, 2667
SatI	GCNGC	8 cut(s)	55, 153, 156, 159, 519, 2115, 2739, 2742
Sau3AI	GATC	6 cut(s)	172, 526, 1248, 1327, 1954, 2695
Sau96I	GGNCC	8 cut(s)	67, 209, 998, 1199, 1654, 2186, 2392, 2511
ScaI	AGTACT	2 cut(s)	1875, 2574
SchI	GAGTC	4 cut(s)	125, 582, 1229, 2741
ScrFI	CCNGG	3 cut(s)	1038, 1215, 2258
SduI	GDGCHC	5 cut(s)	270, 320, 411, 1599, 2686
SfaNI	GCATC	7 cut(s)	66, 451, 859, 1492, 1551, 1726, 2711
SfcI	CTRYAG	5 cut(s)	153, 493, 516, 1506, 2742
Sfr274I	CTCGAG	1 cut(s)	1928
SfuI	TTCGAA	1 cut(s)	2087
SinI	GGWCC	4 cut(s)	998, 1199, 1654, 2392
SlaI	CTCGAG	1 cut(s)	1928
SmiMI	CAYNNNNRTG	3 cut(s)	62, 887, 1648
SmlI	CTYRAG	2 cut(s)	354, 1928
SmoI	CTYRAG	2 cut(s)	354, 1928
SpeI	ACTAGT	1 cut(s)	400
SsiI	CCGC	3 cut(s)	374, 1749, 2564
SspMI	CTAG	9 cut(s)	126, 170, 401, 570, 1029, 1836, 1871, 2361, 2547
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	3 cut(s)	1036, 1213, 2256
StyI	CCWWGG	3 cut(s)	621, 1643, 1794
TaaI	ACNGT	3 cut(s)	1918, 1939, 2105
TaiI	ACGT	1 cut(s)	2475
TatI	WGTACW	2 cut(s)	1873, 2572
TfiI	GAWTC	5 cut(s)	184, 1032, 1359, 2036, 2666
TscAI	CASTG	4 cut(s)	36, 219, 1152, 2110
TseFI	GTSAC	2 cut(s)	214, 2272
TseI	GCWGC	8 cut(s)	54, 152, 155, 158, 518, 2114, 2738, 2741
Tsp45I	GTSAC	2 cut(s)	214, 2272
TspGWI	ACGGA	1 cut(s)	1361
TspRI	CASTG	4 cut(s)	36, 219, 1152, 2110
Van91I	CCANNNNNTGG	2 cut(s)	1151, 1242
VpaK11BI	GGWCC	4 cut(s)	998, 1199, 1654, 2392
VspI	ATTAAT	3 cut(s)	243, 1101, 1884
XapI	RAATTY	7 cut(s)	703, 779, 1180, 1495, 2354, 2479, 2647
XbaI	TCTAGA	1 cut(s)	2546
XceI	RCATGY	2 cut(s)	1191, 1396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	725
XhoI	CTCGAG	1 cut(s)	1928
XmnI	GAANNNNTTC	3 cut(s)	978, 1734, 2147
XspI	CTAG	9 cut(s)	126, 170, 401, 570, 1029, 1836, 1871, 2361, 2547
ZrmI	AGTACT	2 cut(s)	1875, 2574
Zsp2I	ATGCAT	1 cut(s)	2760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.