Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Reverse (-)

31280041 .. 31281679

Gene Structure 1639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG298200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGAAGGCAATCTAATACTGTTGCATCTCCTGGAATAAGGAGAGGTCCATGGACTCCTCAGGAGGACAAGAAGCTCTTTGCTTTCGTTCAACAACATGGCCATGGAAGCTGGCGTTCCTTACCCCAGAAAGCTGGCATGTATAAATGTAGGTGGTCCGCCATAGCTGCACAGTTACCAAAGAGAACAGACAATGAGATAAAGAACTACTGGAACACACATCTAAAGAAGAGGTTGGCCAAGATAGGGTTTGATCCTGTAACCCACAAGCCCAAGACCGCCATCCTCGCCTCTGCTGAAGGTGGCGACCCAAAGAACCTCTCAAACCTCAGCCACATAGCTCAGTGGGAAACTGCTCGGCTTCAAGCCGAAGCTAGATTCTCCAGACAGTCAAAACTACTCATCAGTCATGACCAACCTCCTAGATTTGGACCCGTGCCTGTACCACAATGCCTTGACATGAATGAAAGAGCACGAGAAATTCGATTACTGTTAAACTCAATATTAGCTGCAGACAGTGGTGCCCAATTAGGTGGTGGTATTGGTATTACAGCCACCCACGTTGGGCAGGAGGTTGGTTCATTTGGTAAAGTTGATGTTGAGGGCTTGCTTACTAATTGTGATCAGTTTGAGGCTCCAAAAACCAGTACATCAGTTCTGGGTTTTGATGAAGTTTTTGGGGAGTCCGGTACTAATAATGACTACGGTGAACTGTTGGAGGCACTACTACAGCACAACCATAACAATACTGGATTTGAAGTTGGGGATGCTTGGAGTTTGGAACAACGTGAAACAGTAATGATGAGCGAGCCGGGAACAACGTACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

276

Amino Acids

30.43

Weight (kDa)

7.13

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 50	2.1e-08	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 85	2.7e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	48 - 75	2.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	521
AciI	CCGC	2 cut(s)	159, 279
AclWI	GGATC	1 cut(s)	248
AcoI	YGGCCR	2 cut(s)	100, 237
AcsI	RAATTY	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	4 cut(s)	444, 649, 691, 824
AfiI	CCNNNNNNNGG	3 cut(s)	246, 428, 564
AgsI	TTSAA	3 cut(s)	92, 365, 758
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	7 cut(s)	76, 111, 134, 167, 341, 374, 509
AluI	AGCT	7 cut(s)	76, 111, 134, 167, 341, 374, 509
Alw21I	GWGCWC	1 cut(s)	475
AlwI	GGATC	1 cut(s)	248
AoxI	GGCC	2 cut(s)	100, 237
ApeKI	GCWGC	2 cut(s)	167, 509
ApoI	RAATTY	1 cut(s)	480
AspS9I	GGNCC	3 cut(s)	47, 156, 431
AsuC2I	CCSGG	1 cut(s)	813
AsuHPI	GGTGA	1 cut(s)	719
AvaII	GGWCC	3 cut(s)	47, 156, 431
AxyI	CCTNAGG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	526
BalI	TGGCCA	2 cut(s)	102, 239
BanI	GGYRCC	1 cut(s)	521
BauI	CACGAG	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	475
BbvCI	CCTCAGC	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	154, 496
BccI	CCATC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	813
BfaI	CTAG	2 cut(s)	375, 423
BfmI	CTRYAG	2 cut(s)	510, 728
BisI	GCNGC	2 cut(s)	168, 510
BlsI	GCNGC	2 cut(s)	169, 511
Bme1390I	CCNGG	2 cut(s)	33, 813
Bme18I	GGWCC	3 cut(s)	47, 156, 431
BmgT120I	GGNCC	3 cut(s)	47, 156, 431
BmiI	GGNNCC	3 cut(s)	433, 523, 636
BmrFI	CCNGG	2 cut(s)	33, 813
BmsI	GCATC	2 cut(s)	35, 757
BpmI	CTGGAG	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	813
BsaJI	CCNNGG	2 cut(s)	50, 103
BsaWI	WCCGGW	1 cut(s)	686
Bsc4I	CCNNNNNNNGG	3 cut(s)	246, 428, 564
Bse1I	ACTGG	3 cut(s)	215, 645, 754
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	50, 103
BseGI	GGATG	2 cut(s)	282, 772
BseLI	CCNNNNNNNGG	3 cut(s)	246, 428, 564
BseMII	CTCAG	3 cut(s)	74, 343, 356
BseNI	ACTGG	3 cut(s)	215, 645, 754
BseRI	GAGGAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	2 cut(s)	154, 496
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	102, 239
BshNI	GGYRCC	1 cut(s)	521
BsiHKAI	GWGCWC	1 cut(s)	475
BsiSI	CCGG	2 cut(s)	687, 812
BslI	CCNNNNNNNGG	3 cut(s)	246, 428, 564
BsnI	GGCC	2 cut(s)	102, 239
Bsp1286I	GDGCHC	2 cut(s)	475, 526
Bsp143I	GATC	2 cut(s)	253, 622
Bsp19I	CCATGG	2 cut(s)	50, 103
BspACI	CCGC	2 cut(s)	159, 279
BspANI	GGCC	2 cut(s)	102, 239
BspCNI	CTCAG	3 cut(s)	73, 342, 355
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	3 cut(s)	433, 523, 636
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	521
BsrI	ACTGG	3 cut(s)	215, 645, 754
BssECI	CCNNGG	2 cut(s)	50, 103
BssMI	GATC	2 cut(s)	253, 622
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	2 cut(s)	50, 103
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	8 cut(s)	22, 174, 390, 492, 518, 707, 714, 796
Bst6I	CTCTTC	1 cut(s)	224
BstC8I	GCNNGC	4 cut(s)	113, 136, 608, 809
BstDEI	CTNAG	3 cut(s)	60, 329, 342
BstDSI	CCRYGG	2 cut(s)	50, 103
BstF5I	GGATG	2 cut(s)	282, 772
BstKTI	GATC	2 cut(s)	256, 625
BstMBI	GATC	2 cut(s)	253, 622
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 167, 287
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	2 cut(s)	31, 811
BstSFI	CTRYAG	2 cut(s)	510, 728
BstSLI	GKGCMC	1 cut(s)	526
BstV1I	GCAGC	2 cut(s)	154, 496
BstXI	CCANNNNNNTGG	2 cut(s)	134, 533
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	102, 239
BtgI	CCRYGG	2 cut(s)	50, 103
BtsCI	GGATG	2 cut(s)	282, 772
BtsIMutI	CAGTG	2 cut(s)	350, 523
Cac8I	GCNNGC	4 cut(s)	113, 136, 608, 809
CciI	TCATGA	1 cut(s)	409
Cfr13I	GGNCC	3 cut(s)	47, 156, 431
Csp6I	GTAC	4 cut(s)	443, 648, 690, 823
CspCI	CAANNNNNGTGG	2 cut(s)	544, 579
CviAII	CATG	6 cut(s)	51, 98, 104, 139, 410, 460
CviQI	GTAC	4 cut(s)	443, 648, 690, 823
DdeI	CTNAG	3 cut(s)	60, 329, 342
DpnI	GATC	2 cut(s)	255, 624
DpnII	GATC	2 cut(s)	253, 622
EaeI	YGGCCR	2 cut(s)	100, 237
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
EciI	GGCGGA	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	50, 103
Eco47I	GGWCC	3 cut(s)	47, 156, 431
Eco57I	CTGAAG	1 cut(s)	318
Eco81I	CCTNAGG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	2 cut(s)	50, 103
ErhI	CCWWGG	2 cut(s)	50, 103
FaeI	CATG	6 cut(s)	54, 101, 107, 142, 413, 463
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	6 cut(s)	50, 97, 103, 138, 409, 459
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	2 cut(s)	168, 510
FokI	GGATG	2 cut(s)	269, 779
Fsp4HI	GCNGC	2 cut(s)	168, 510
FspBI	CTAG	2 cut(s)	375, 423
GluI	GCNGC	2 cut(s)	168, 510
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	2 cut(s)	102, 239
HapII	CCGG	2 cut(s)	687, 812
Hin1II	CATG	6 cut(s)	54, 101, 107, 142, 413, 463
HinfI	GANTC	3 cut(s)	55, 378, 683
HpaII	CCGG	2 cut(s)	687, 812
HphI	GGTGA	1 cut(s)	719
Hpy166II	GTNNAC	1 cut(s)	710
Hpy188III	TCNNGA	3 cut(s)	62, 384, 410
Hpy8I	GTNNAC	1 cut(s)	710
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	8 cut(s)	22, 174, 390, 492, 518, 707, 714, 796
HpyCH4IV	ACGT	3 cut(s)	561, 787, 821
HpyCH4V	TGCA	3 cut(s)	26, 170, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 167, 287
HpyF3I	CTNAG	3 cut(s)	60, 329, 342
HpySE526I	ACGT	3 cut(s)	561, 787, 821
Hsp92II	CATG	6 cut(s)	54, 101, 107, 142, 413, 463
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	2 cut(s)	253, 622
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	2 cut(s)	154, 496
LweI	GCATC	2 cut(s)	35, 757
MaeI	CTAG	2 cut(s)	375, 423
MaeII	ACGT	3 cut(s)	561, 787, 821
MaeIII	GTNAC	2 cut(s)	174, 259
MalI	GATC	2 cut(s)	255, 624
MboI	GATC	2 cut(s)	253, 622
MboII	GAAGA	1 cut(s)	241
MhlI	GDGCHC	2 cut(s)	475, 526
MlsI	TGGCCA	2 cut(s)	102, 239
MluCI	AATT	3 cut(s)	480, 527, 616
MluNI	TGGCCA	2 cut(s)	102, 239
MlyI	GAGTC	2 cut(s)	49, 692
MmeI	TCCRAC	1 cut(s)	696
Mox20I	TGGCCA	2 cut(s)	102, 239
MscI	TGGCCA	2 cut(s)	102, 239
MseI	TTAA	1 cut(s)	494
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	2 cut(s)	102, 239
MspI	CCGG	2 cut(s)	687, 812
MspR9I	CCNGG	2 cut(s)	33, 813
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	108, 167, 287
NciI	CCSGG	1 cut(s)	813
NcoI	CCATGG	2 cut(s)	50, 103
NdeII	GATC	2 cut(s)	253, 622
NlaIII	CATG	6 cut(s)	54, 101, 107, 142, 413, 463
NlaIV	GGNNCC	3 cut(s)	433, 523, 636
NmeAIII	GCCGAG	1 cut(s)	337
NspI	RCATGY	1 cut(s)	142
PagI	TCATGA	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	378
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	169, 511
PleI	GAGTC	2 cut(s)	49, 691
PpsI	GAGTC	2 cut(s)	49, 691
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	3 cut(s)	433, 523, 636
PspPI	GGNCC	3 cut(s)	47, 156, 431
PstI	CTGCAG	1 cut(s)	514
RsaI	GTAC	4 cut(s)	444, 649, 691, 824
RsaNI	GTAC	4 cut(s)	443, 648, 690, 823
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	2 cut(s)	168, 510
Sau3AI	GATC	2 cut(s)	253, 622
Sau96I	GGNCC	3 cut(s)	47, 156, 431
SchI	GAGTC	2 cut(s)	49, 692
ScrFI	CCNGG	2 cut(s)	33, 813
SduI	GDGCHC	2 cut(s)	475, 526
SfaNI	GCATC	2 cut(s)	35, 757
SfcI	CTRYAG	2 cut(s)	510, 728
SinI	GGWCC	3 cut(s)	47, 156, 431
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	3 cut(s)	480, 527, 616
SsiI	CCGC	2 cut(s)	159, 279
SspI	AATATT	1 cut(s)	504
SspMI	CTAG	2 cut(s)	375, 423
StyD4I	CCNGG	2 cut(s)	31, 811
StyI	CCWWGG	2 cut(s)	50, 103
TaaI	ACNGT	8 cut(s)	22, 174, 390, 492, 518, 707, 714, 796
TaiI	ACGT	3 cut(s)	564, 790, 824
TaqI	TCGA	1 cut(s)	484
TasI	AATT	3 cut(s)	480, 527, 616
TatI	WGTACW	1 cut(s)	647
TfiI	GAWTC	1 cut(s)	378
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	2 cut(s)	350, 523
TseI	GCWGC	2 cut(s)	167, 509
TspDTI	ATGAA	4 cut(s)	476, 480, 570, 684
TspRI	CASTG	2 cut(s)	350, 523
VpaK11BI	GGWCC	3 cut(s)	47, 156, 431
XapI	RAATTY	1 cut(s)	480
XceI	RCATGY	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	2 cut(s)	533, 746
XspI	CTAG	2 cut(s)	375, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.