Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Reverse (-)

32145613 .. 32146664

Gene Structure 1052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45004

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGTCTGTTTTTCCCTCCCATATTTGAGAGAACTTCTCCATATTTTGTGTAATATATTGTGGTCCACCATAGCTGCACAGTTACCAAAGAGAACAGACAATGAGATAAAGAACTACTGGAACACACATCTAAAGAAGAGGTTAGCCAAGATAGGGTTTGATCCTGTAACCCACAAGCCCAAGACCGCCATCCTCGCCTCTGCTGATGGTGGCGACCCGAAGAAGCTCTCAAACCTCAGCCACATAGCTCAGTGGGAAACTGCTCGGCTTCAAGCAGAAGCTAGATTCTCCAGACAGTCAAAACTACTCATCAGTCATGACCAACCTCCTAGATTTGGACCCGTGCCTGCACCACAATGCCTTGACATGAATGAAAGAGCACGAGAAATTCGATTACTGTTAAAGTCAATATTAGCTGCAGACAGTGGTGCCCAATTAGGTGGTGGTATTGGTAGTACAGCCACCCACGTTGGGCAGGAGGTTGGTTCATTTGGTAAAGTTGATGTTGAGGGCTTGCTTACTAATTGTGATCAGTTTGAGGCTCCAAGAACCAGTACATCAGTTCTGGGTTTTGATGAAGTTTTTGGGGAGTCCGGTACTAATAATGACTACGGTGAACTGTTGGAGGCATTACTACAGCACAACCATAACAATACTGGATTTGAAGTTGGGGATACTTGGACTTTGGAACAACGTGAAACAGTAATGATGAGCGAGCCGGGAACAACGTACATTTGGAATAATAACAATTATAATGTCCTTACCGGCCACCCGTCTGGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

261

Amino Acids

28.85

Weight (kDa)

5.99

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	21 - 44	3.6e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	753
AccB1I	GGYRCC	1 cut(s)	428
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	766
AcsI	RAATTY	1 cut(s)	387
AfaI	GTAC	4 cut(s)	457, 556, 598, 731
AfiI	CCNNNNNNNGG	3 cut(s)	153, 335, 471
AgsI	TTSAA	2 cut(s)	272, 665
AluBI	AGCT	5 cut(s)	74, 226, 248, 281, 416
AluI	AGCT	5 cut(s)	74, 226, 248, 281, 416
Alw21I	GWGCWC	1 cut(s)	382
AlwI	GGATC	1 cut(s)	155
AoxI	GGCC	1 cut(s)	766
ApeKI	GCWGC	2 cut(s)	74, 416
ApoI	RAATTY	1 cut(s)	387
AspS9I	GGNCC	2 cut(s)	63, 338
AsuC2I	CCSGG	1 cut(s)	720
AsuHPI	GGTGA	1 cut(s)	626
AvaII	GGWCC	2 cut(s)	63, 338
BaeGI	GKGCMC	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	428
BauI	CACGAG	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	382
BbvCI	CCTCAGC	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	61, 403
BccI	CCATC	2 cut(s)	197, 200
BciVI	GTATCC	1 cut(s)	667
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	720
BfaI	CTAG	2 cut(s)	282, 330
BfmI	CTRYAG	2 cut(s)	417, 635
BfuI	GTATCC	1 cut(s)	667
BisI	GCNGC	2 cut(s)	75, 417
BlsI	GCNGC	2 cut(s)	76, 418
Bme1390I	CCNGG	1 cut(s)	720
Bme18I	GGWCC	2 cut(s)	63, 338
BmgT120I	GGNCC	2 cut(s)	63, 338
BmiI	GGNNCC	3 cut(s)	340, 430, 543
BmrFI	CCNGG	1 cut(s)	720
BplI	GAGNNNNNCTC	2 cut(s)	21, 53
BpmI	CTGGAG	1 cut(s)	274
Bpu10I	CCTNAGC	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	720
BsaWI	WCCGGW	1 cut(s)	593
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 335, 471
Bse118I	RCCGGY	1 cut(s)	764
Bse1I	ACTGG	3 cut(s)	122, 552, 661
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	3 cut(s)	153, 335, 471
BseMII	CTCAG	2 cut(s)	250, 263
BseNI	ACTGG	3 cut(s)	122, 552, 661
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	2 cut(s)	61, 403
BsgI	GTGCAG	2 cut(s)	60, 333
BshFI	GGCC	1 cut(s)	768
BshNI	GGYRCC	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	382
BsiSI	CCGG	3 cut(s)	594, 719, 765
BslI	CCNNNNNNNGG	3 cut(s)	153, 335, 471
BsnI	GGCC	1 cut(s)	768
Bsp1286I	GDGCHC	2 cut(s)	382, 433
Bsp143I	GATC	2 cut(s)	160, 529
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	768
BspCNI	CTCAG	2 cut(s)	249, 262
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	3 cut(s)	340, 430, 543
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	428
BsrFI	RCCGGY	1 cut(s)	764
BsrI	ACTGG	3 cut(s)	122, 552, 661
BssAI	RCCGGY	1 cut(s)	764
BssMI	GATC	2 cut(s)	160, 529
BssSI	CACGAG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	381
Bst4CI	ACNGT	7 cut(s)	81, 297, 399, 425, 614, 621, 703
Bst6I	CTCTTC	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	348, 515, 716
BstDEI	CTNAG	2 cut(s)	236, 249
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	2 cut(s)	163, 532
BstMBI	GATC	2 cut(s)	160, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	718
BstSFI	CTRYAG	2 cut(s)	417, 635
BstSLI	GKGCMC	1 cut(s)	433
BstV1I	GCAGC	2 cut(s)	61, 403
BstXI	CCANNNNNNTGG	2 cut(s)	440, 776
BsuI	GTATCC	1 cut(s)	667
BsuRI	GGCC	1 cut(s)	768
BtsCI	GGATG	1 cut(s)	189
BtsIMutI	CAGTG	2 cut(s)	257, 430
Cac8I	GCNNGC	3 cut(s)	348, 515, 716
CciI	TCATGA	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	2 cut(s)	63, 338
Csp6I	GTAC	4 cut(s)	456, 555, 597, 730
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviAII	CATG	2 cut(s)	317, 367
CviQI	GTAC	4 cut(s)	456, 555, 597, 730
DdeI	CTNAG	2 cut(s)	236, 249
DpnI	GATC	2 cut(s)	162, 531
DpnII	GATC	2 cut(s)	160, 529
EaeI	YGGCCR	1 cut(s)	766
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	63, 338
FaeI	CATG	2 cut(s)	320, 370
FatI	CATG	2 cut(s)	316, 366
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	2 cut(s)	75, 417
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	75, 417
FspBI	CTAG	2 cut(s)	282, 330
GluI	GCNGC	2 cut(s)	75, 417
GsuI	CTGGAG	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	768
HapII	CCGG	3 cut(s)	594, 719, 765
Hin1II	CATG	2 cut(s)	320, 370
HinfI	GANTC	2 cut(s)	285, 590
HpaII	CCGG	3 cut(s)	594, 719, 765
HphI	GGTGA	1 cut(s)	626
Hpy166II	GTNNAC	2 cut(s)	66, 617
Hpy188III	TCNNGA	3 cut(s)	291, 317, 777
Hpy8I	GTNNAC	2 cut(s)	66, 617
HpyCH4III	ACNGT	7 cut(s)	81, 297, 399, 425, 614, 621, 703
HpyCH4IV	ACGT	3 cut(s)	468, 694, 728
HpyCH4V	TGCA	3 cut(s)	77, 350, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	2 cut(s)	236, 249
HpySE526I	ACGT	3 cut(s)	468, 694, 728
Hsp92II	CATG	2 cut(s)	320, 370
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	2 cut(s)	160, 529
LmnI	GCTCC	1 cut(s)	547
Lsp1109I	GCAGC	2 cut(s)	61, 403
MaeI	CTAG	2 cut(s)	282, 330
MaeII	ACGT	3 cut(s)	468, 694, 728
MaeIII	GTNAC	2 cut(s)	81, 166
MalI	GATC	2 cut(s)	162, 531
MboI	GATC	2 cut(s)	160, 529
MboII	GAAGA	2 cut(s)	148, 232
MhlI	GDGCHC	2 cut(s)	382, 433
MluCI	AATT	4 cut(s)	387, 434, 523, 748
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	603
MseI	TTAA	1 cut(s)	401
MslI	CAYNNNNRTG	1 cut(s)	355
MspI	CCGG	3 cut(s)	594, 719, 765
MspR9I	CCNGG	1 cut(s)	720
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	720
NdeII	GATC	2 cut(s)	160, 529
NlaIII	CATG	2 cut(s)	320, 370
NlaIV	GGNNCC	3 cut(s)	340, 430, 543
NmeAIII	GCCGAG	1 cut(s)	244
PagI	TCATGA	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	2 cut(s)	76, 418
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
PsiI	TTATAA	1 cut(s)	753
PspN4I	GGNNCC	3 cut(s)	340, 430, 543
PspPI	GGNCC	2 cut(s)	63, 338
PstI	CTGCAG	1 cut(s)	421
RsaI	GTAC	4 cut(s)	457, 556, 598, 731
RsaNI	GTAC	4 cut(s)	456, 555, 597, 730
RseI	CAYNNNNRTG	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	2 cut(s)	75, 417
Sau3AI	GATC	2 cut(s)	160, 529
Sau96I	GGNCC	2 cut(s)	63, 338
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	1 cut(s)	720
SduI	GDGCHC	2 cut(s)	382, 433
SfcI	CTRYAG	2 cut(s)	417, 635
SinI	GGWCC	2 cut(s)	63, 338
SmiMI	CAYNNNNRTG	1 cut(s)	355
Sse9I	AATT	4 cut(s)	387, 434, 523, 748
SsiI	CCGC	1 cut(s)	186
SspI	AATATT	1 cut(s)	411
SspMI	CTAG	2 cut(s)	282, 330
StyD4I	CCNGG	1 cut(s)	718
TaaI	ACNGT	7 cut(s)	81, 297, 399, 425, 614, 621, 703
TaiI	ACGT	3 cut(s)	471, 697, 731
TaqI	TCGA	1 cut(s)	391
TasI	AATT	4 cut(s)	387, 434, 523, 748
TatI	WGTACW	2 cut(s)	455, 554
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TscAI	CASTG	2 cut(s)	257, 430
TseI	GCWGC	2 cut(s)	74, 416
TspDTI	ATGAA	4 cut(s)	383, 387, 477, 591
TspRI	CASTG	2 cut(s)	257, 430
VpaK11BI	GGWCC	2 cut(s)	63, 338
XapI	RAATTY	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	2 cut(s)	440, 653
XspI	CTAG	2 cut(s)	282, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.