Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Reverse (-)

8312986 .. 8314711

Gene Structure 1726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGAAAGCAATCCAACACTGCTGCATCTCCTGGAATAAAGAGAGGTCAATGGACTCCTGAGGAAGACGAGAAGCTCTTCTCTTTCGTTCAGAAACATGGCCATGGAAGCTGGCGTTCCTTGCCCCGGAAAGCTGGTCTCCAAAGATGTGGAAAGAGCTGCAGGCTACGATGGAAAAACTACCTAAACCCTGATATTAAGAGAGGAAATTTCAGTTTGCAGGAAGACCAGACCATCATTCAACTTCATGCACTTCTGGGCAACAGGTGGTCGGCCATAGCTGCACAGTTACCAAAGAGAACAGACAATGAAGTAAAGAACTACTGGAATACACATTTGAAGAAGAGGTTAGCCAAGAAAGGGTTTGATCCTGTAACCCACAAACCCAAGACCGCCATCCTTGCCTCTGCTAAGGGCGGCGACCCGAAAAACCTCTCAAACCTCAGTCACATAGCTCAGTGGGAAACCGCTCGGCTTCAAGCAGAAGCTAGGTTTGCCAGACAGTCAAAGCTACTCATCAATAATGACCAAGCTCCTGTATCTGACATGAACGAAAGAGCACGCGAAATCCTGCTACTGTTAAAGTCAGCATTAGCTGCAGGCAGCGGTGGTGGTATTTGTAGTGCCATCCAAGTTGGGCAGGAGATTGATTCATTTGGTAATGTTGACGTTGAGGGTTTGCTTAGTAACTATGATCAGTTTATGGCTCCGACAACCAGTACGTCAGTTCTGGATTTTAGTGAAGTTTTTGGGGATTATGGTACTCATAATGAATATGGTGAACTATTGGAGGCATTAATACTCCAGCACAATCATAACAGTGCTGGATTTGAGGTTGGGGATGCACGGAGTTTGGAACAGTATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

290

Amino Acids

32.13

Weight (kDa)

9.02

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	3.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 77	1.6e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 113	1.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 123	1.9e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	470
AccII	CGCG	1 cut(s)	564
AciI	CCGC	4 cut(s)	393, 417, 468, 606
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	2 cut(s)	100, 273
AcsI	RAATTY	1 cut(s)	208
AfaI	GTAC	2 cut(s)	721, 763
AfiI	CCNNNNNNNGG	2 cut(s)	126, 360
AgsI	TTSAA	3 cut(s)	242, 340, 479
AjnI	CCWGG	1 cut(s)	31
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	362
AoxI	GGCC	2 cut(s)	100, 273
ApeKI	GCWGC	5 cut(s)	23, 159, 281, 596, 603
ApoI	RAATTY	1 cut(s)	208
AseI	ATTAAT	1 cut(s)	797
Asp700I	GAANNNNTTC	1 cut(s)	77
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	791
AxyI	CCTNAGG	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	102
BbsI	GAAGAC	2 cut(s)	72, 231
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	5 cut(s)	10, 146, 268, 583, 615
BccI	CCATC	4 cut(s)	165, 242, 404, 635
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	2 cut(s)	160, 597
BisI	GCNGC	6 cut(s)	24, 160, 282, 418, 597, 604
BlsI	GCNGC	6 cut(s)	25, 161, 283, 419, 598, 605
Bme1390I	CCNGG	2 cut(s)	33, 127
BmiI	GGNNCC	1 cut(s)	708
BmrFI	CCNGG	2 cut(s)	33, 127
BmsI	GCATC	2 cut(s)	35, 832
BpiI	GAAGAC	2 cut(s)	72, 231
BpmI	CTGGAG	1 cut(s)	788
Bpu10I	CCTNAGC	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	103, 125
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 360
Bse1I	ACTGG	2 cut(s)	329, 717
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	103, 125
BseGI	GGATG	3 cut(s)	396, 627, 847
BseLI	CCNNNNNNNGG	2 cut(s)	126, 360
BseMII	CTCAG	3 cut(s)	51, 457, 470
BseNI	ACTGG	2 cut(s)	329, 717
BseXI	GCAGC	5 cut(s)	10, 146, 268, 583, 615
BsgI	GTGCAG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	564
BshFI	GGCC	2 cut(s)	102, 275
BsiHKAI	GWGCWC	1 cut(s)	562
BsiSI	CCGG	1 cut(s)	127
BslI	CCNNNNNNNGG	2 cut(s)	126, 360
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	102, 275
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	2 cut(s)	367, 694
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	4 cut(s)	393, 417, 468, 606
BspANI	GGCC	2 cut(s)	102, 275
BspCNI	CTCAG	3 cut(s)	52, 456, 469
BspFNI	CGCG	1 cut(s)	564
BspLI	GGNNCC	1 cut(s)	708
BspMAI	CTGCAG	2 cut(s)	164, 601
BspPI	GGATC	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	143
BsrBI	CCGCTC	1 cut(s)	470
BsrI	ACTGG	2 cut(s)	329, 717
BssECI	CCNNGG	2 cut(s)	103, 125
BssMI	GATC	2 cut(s)	367, 694
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	5 cut(s)	288, 504, 579, 821, 861
Bst6I	CTCTTC	2 cut(s)	83, 338
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstC8I	GCNNGC	4 cut(s)	113, 164, 562, 601
BstDEI	CTNAG	5 cut(s)	60, 411, 443, 456, 683
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	3 cut(s)	396, 627, 847
BstFNI	CGCG	1 cut(s)	564
BstKTI	GATC	2 cut(s)	370, 697
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	367, 694
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 121, 281, 401, 494, 596
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	31, 125
BstSFI	CTRYAG	2 cut(s)	160, 597
BstUI	CGCG	1 cut(s)	564
BstV1I	GCAGC	5 cut(s)	10, 146, 268, 583, 615
BstV2I	GAAGAC	2 cut(s)	72, 231
BstXI	CCANNNNNNTGG	1 cut(s)	149
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	102, 275
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	3 cut(s)	396, 627, 847
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	3 cut(s)	18, 464, 826
Cac8I	GCNNGC	4 cut(s)	113, 164, 562, 601
Csp6I	GTAC	2 cut(s)	720, 762
CviAII	CATG	4 cut(s)	98, 104, 248, 547
CviQI	GTAC	2 cut(s)	720, 762
DdeI	CTNAG	5 cut(s)	60, 411, 443, 456, 683
DpnI	GATC	2 cut(s)	369, 696
DpnII	GATC	2 cut(s)	367, 694
EaeI	YGGCCR	2 cut(s)	100, 273
Eam1104I	CTCTTC	2 cut(s)	83, 338
EarI	CTCTTC	2 cut(s)	83, 338
Eco130I	CCWWGG	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	4 cut(s)	101, 107, 251, 550
FatI	CATG	4 cut(s)	97, 103, 247, 546
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	6 cut(s)	24, 160, 282, 418, 597, 604
FokI	GGATG	3 cut(s)	383, 614, 854
Fsp4HI	GCNGC	6 cut(s)	24, 160, 282, 418, 597, 604
FspBI	CTAG	1 cut(s)	489
GluI	GCNGC	6 cut(s)	24, 160, 282, 418, 597, 604
GsuI	CTGGAG	1 cut(s)	788
HaeIII	GGCC	2 cut(s)	102, 275
HapII	CCGG	1 cut(s)	127
Hin1II	CATG	4 cut(s)	101, 107, 251, 550
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	2 cut(s)	55, 650
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	1 cut(s)	791
Hpy166II	GTNNAC	2 cut(s)	667, 782
Hpy188I	TCNGA	3 cut(s)	93, 544, 711
Hpy188III	TCNNGA	2 cut(s)	59, 731
Hpy8I	GTNNAC	2 cut(s)	667, 782
HpyCH4III	ACNGT	5 cut(s)	288, 504, 579, 821, 861
HpyCH4IV	ACGT	2 cut(s)	669, 722
HpyCH4V	TGCA	7 cut(s)	26, 162, 220, 251, 284, 599, 845
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 121, 281, 401, 494, 596
HpyF3I	CTNAG	5 cut(s)	60, 411, 443, 456, 683
HpySE526I	ACGT	2 cut(s)	669, 722
Hsp92II	CATG	4 cut(s)	101, 107, 251, 550
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	2 cut(s)	367, 694
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	2 cut(s)	538, 712
Lsp1109I	GCAGC	5 cut(s)	10, 146, 268, 583, 615
LweI	GCATC	2 cut(s)	35, 832
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	2 cut(s)	669, 722
MaeIII	GTNAC	4 cut(s)	288, 373, 446, 686
MalI	GATC	2 cut(s)	369, 696
MbiI	CCGCTC	1 cut(s)	470
MboI	GATC	2 cut(s)	367, 694
MboII	GAAGA	5 cut(s)	70, 77, 236, 352, 355
MhlI	GDGCHC	1 cut(s)	562
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	1 cut(s)	208
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	2 cut(s)	39, 734
Mox20I	TGGCCA	1 cut(s)	102
MroXI	GAANNNNTTC	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	3 cut(s)	198, 581, 797
MslI	CAYNNNNRTG	2 cut(s)	102, 819
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	606
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	2 cut(s)	33, 127
MvaI	CCWGG	1 cut(s)	33
MvnI	CGCG	1 cut(s)	564
MwoI	GCNNNNNNNGC	6 cut(s)	108, 121, 281, 401, 494, 596
NciI	CCSGG	1 cut(s)	127
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	367, 694
NlaIII	CATG	4 cut(s)	101, 107, 251, 550
NlaIV	GGNNCC	1 cut(s)	708
NmeAIII	GCCGAG	1 cut(s)	451
NmuCI	GTSAC	1 cut(s)	446
PciSI	GCTCTTC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	650
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	6 cut(s)	25, 161, 283, 419, 598, 605
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PshBI	ATTAAT	1 cut(s)	797
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	708
PstI	CTGCAG	2 cut(s)	164, 601
RsaI	GTAC	2 cut(s)	721, 763
RsaNI	GTAC	2 cut(s)	720, 762
RseI	CAYNNNNRTG	2 cut(s)	102, 819
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	198, 581, 797
SatI	GCNGC	6 cut(s)	24, 160, 282, 418, 597, 604
Sau3AI	GATC	2 cut(s)	367, 694
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	33, 127
SduI	GDGCHC	1 cut(s)	562
SfaNI	GCATC	2 cut(s)	35, 832
SfcI	CTRYAG	2 cut(s)	160, 597
SmiMI	CAYNNNNRTG	2 cut(s)	102, 819
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	4 cut(s)	393, 417, 468, 606
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	2 cut(s)	31, 125
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	5 cut(s)	288, 504, 579, 821, 861
TaiI	ACGT	2 cut(s)	672, 725
TasI	AATT	1 cut(s)	208
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	650
Tru1I	TTAA	3 cut(s)	198, 581, 797
Tru9I	TTAA	3 cut(s)	198, 581, 797
TscAI	CASTG	3 cut(s)	25, 464, 826
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	5 cut(s)	23, 159, 281, 596, 603
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	5 cut(s)	236, 324, 563, 642, 786
TspGWI	ACGGA	1 cut(s)	862
TspRI	CASTG	3 cut(s)	25, 464, 826
VspI	ATTAAT	1 cut(s)	797
XapI	RAATTY	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	77
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.