Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Forward (+)

4974671 .. 4976470

Gene Structure 1800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGGTAGATCACCGTGTTGTGACAAATTGGGTTTGAAGAAAGGACCTTGGACACCAGAGGAGGATCAGAAACTTTTAGCTTATATTGAAGAACATGGTCATGGAAGTTGGCGTTCATTGCCTGAGAAAGCTGGTCTCCATCGATGCGGAAAGAGTTGTAGACTAAGATGGACTAACTACCTAAGACCTGACATCAAAAGAGGCAAATTCAACTTACAAGAAGAACAAACCATTATCCAACTCCATGCTCTGTTAGGAAACAGATGGTCAGCGATTGCTACTCATTTGCCAAAGAGAACAGACAACGAGATCAAGAACTATTGGAACACTCATTTGAAGAAACGGTTAGTGAAAATGGGGATTGATCCAGTGACTCATAAACCCAAAAACGAGACTCCTTTATCTTCTCTTGGTCTATCCAAGAACGCAGCTATACTTAGCCACACTGCTCAATGGGAAAGTGCAAGGCTTGAAGCTGAAGCAAGACTAGCTAGAGAATCAAAGCTTCTTCATTTACAACATTACCAAACCAAAACATCATCTCAACCTCATCATCATCATGGATTCACTCACAAGTCATTGTTACCTAATTGGACAACAAAACCACACGAAGATCAACAACAGCTTGAATCTCCGACATCTACAGTGTCATTCTCTGAGATGAAGGAATCAATCCCGGCGAAGATAGAGTTTGTCGGATCATCAACTGGTGTGACTCTGATGAAAGAACCTGAACACGATTGGATCAATTCAACGATGCACGAGTTTGAAACTACGCAGATGGGAGAAGGAATCGAAGAAGGGTTCACGGGTCTCTTGCTCGGTGGTGATTCAATCGACCGGAGTTTCTCCGGCGATAAAAACGAGACGGCCGGCGAGAGTAGTGGTGGTGACTGCAACTACTATGAGGACAACAAGAACTACTTGGACAGCATTTTTAACTTTGTAGATCCTTCACCGTCGGATTCACCGATGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008150 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009739 GO:0009751 GO:0009753 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010033 GO:0010035 GO:0010038 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0035017 GO:0042221 GO:0042335 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048468 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901957 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

326

Amino Acids

36.94

Weight (kDa)

6.52

Isoelectric Point (pI)

54.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	6.5e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	5.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 114	3.5e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	5 cut(s)	72, 359, 706, 752, 944
AcoI	YGGCCR	1 cut(s)	870
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	498
AgsI	TTSAA	9 cut(s)	37, 89, 211, 337, 473, 629, 753, 770, 834
AluBI	AGCT	7 cut(s)	80, 131, 431, 476, 491, 505, 625
AluI	AGCT	7 cut(s)	80, 131, 431, 476, 491, 505, 625
Alw26I	GTCTC	4 cut(s)	140, 386, 818, 860
AlwI	GGATC	5 cut(s)	72, 359, 706, 752, 944
AoxI	GGCC	1 cut(s)	870
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	677
AsuHPI	GGTGA	5 cut(s)	3, 839, 902, 948, 960
AvaII	GGWCC	1 cut(s)	44
BauI	CACGAG	1 cut(s)	761
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	4 cut(s)	147, 162, 258, 775
BceAI	ACGGC	1 cut(s)	885
BcnI	CCSGG	1 cut(s)	677
BcoDI	GTCTC	4 cut(s)	140, 386, 818, 860
BfaI	CTAG	2 cut(s)	488, 492
BfmI	CTRYAG	1 cut(s)	642
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	677
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	677
BmsI	GCATC	2 cut(s)	134, 747
BpuMI	CCSGG	1 cut(s)	677
Bsa29I	ATCGAT	1 cut(s)	142
BsaI	GGTCTC	2 cut(s)	140, 818
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	840
Bse118I	RCCGGY	1 cut(s)	872
Bse1I	ACTGG	2 cut(s)	368, 712
Bse3DI	GCAATG	1 cut(s)	116
BseCI	ATCGAT	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	47
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	2 cut(s)	114, 648
BseNI	ACTGG	2 cut(s)	368, 712
BseRI	GAGGAG	1 cut(s)	74
BseX3I	CGGCCG	1 cut(s)	870
BseXI	GCAGC	1 cut(s)	440
Bsh1285I	CGRYCG	2 cut(s)	841, 873
BshFI	GGCC	1 cut(s)	872
BshVI	ATCGAT	1 cut(s)	142
BsiEI	CGRYCG	2 cut(s)	841, 873
BsiSI	CCGG	4 cut(s)	677, 841, 852, 873
BsmAI	GTCTC	4 cut(s)	140, 386, 818, 860
BsmBI	CGTCTC	1 cut(s)	860
BsnI	GGCC	1 cut(s)	872
Bso31I	GGTCTC	2 cut(s)	140, 818
Bsp143I	GATC	8 cut(s)	8, 64, 309, 364, 613, 698, 744, 949
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	872
BspCNI	CTCAG	2 cut(s)	115, 649
BspDI	ATCGAT	1 cut(s)	142
BspPI	GGATC	5 cut(s)	72, 359, 706, 752, 944
BspTNI	GGTCTC	2 cut(s)	140, 818
BsrDI	GCAATG	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	872
BsrI	ACTGG	2 cut(s)	368, 712
BssAI	RCCGGY	1 cut(s)	872
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	8 cut(s)	8, 64, 309, 364, 613, 698, 744, 949
BssSI	CACGAG	1 cut(s)	761
BssT1I	CCWWGG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	761
Bst4CI	ACNGT	4 cut(s)	15, 345, 646, 960
BstC8I	GCNNGC	1 cut(s)	874
BstDEI	CTNAG	5 cut(s)	123, 164, 182, 437, 657
BstKTI	GATC	8 cut(s)	11, 67, 312, 367, 616, 701, 747, 952
BstMAI	GTCTC	4 cut(s)	140, 386, 818, 860
BstMBI	GATC	8 cut(s)	8, 64, 309, 364, 613, 698, 744, 949
BstMCI	CGRYCG	2 cut(s)	841, 873
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 488
BstSCI	CCNGG	1 cut(s)	675
BstSFI	CTRYAG	1 cut(s)	642
BstV1I	GCAGC	1 cut(s)	440
BstX2I	RGATCY	1 cut(s)	949
BstYI	RGATCY	1 cut(s)	949
BstZI	CGGCCG	1 cut(s)	870
Bsu15I	ATCGAT	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	872
BsuTUI	ATCGAT	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	375, 444, 651
Cac8I	GCNNGC	1 cut(s)	874
Cfr10I	RCCGGY	1 cut(s)	872
Cfr13I	GGNCC	1 cut(s)	44
ClaI	ATCGAT	1 cut(s)	142
CviAII	CATG	4 cut(s)	95, 101, 245, 560
DdeI	CTNAG	5 cut(s)	123, 164, 182, 437, 657
DpnI	GATC	8 cut(s)	10, 66, 311, 366, 615, 700, 746, 951
DpnII	GATC	8 cut(s)	8, 64, 309, 364, 613, 698, 744, 949
EaeI	YGGCCR	1 cut(s)	870
EagI	CGGCCG	1 cut(s)	870
EclXI	CGGCCG	1 cut(s)	870
Eco130I	CCWWGG	1 cut(s)	47
Eco31I	GGTCTC	2 cut(s)	140, 818
Eco47I	GGWCC	1 cut(s)	44
Eco52I	CGGCCG	1 cut(s)	870
Eco57I	CTGAAG	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
Esp3I	CGTCTC	1 cut(s)	860
FaeI	CATG	4 cut(s)	98, 104, 248, 563
FaiI	YATR	8 cut(s)	84, 96, 102, 246, 378, 434, 561, 906
FalI	AAGNNNNNCTT	2 cut(s)	908, 940
FatI	CATG	4 cut(s)	94, 100, 244, 559
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	2 cut(s)	488, 492
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	872
HapII	CCGG	4 cut(s)	677, 841, 852, 873
Hin1II	CATG	4 cut(s)	98, 104, 248, 563
HindIII	AAGCTT	1 cut(s)	503
HpaII	CCGG	4 cut(s)	677, 841, 852, 873
HphI	GGTGA	5 cut(s)	3, 839, 902, 948, 960
Hpy166II	GTNNAC	2 cut(s)	161, 807
Hpy188I	TCNGA	7 cut(s)	69, 636, 658, 698, 720, 964, 980
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	2 cut(s)	161, 807
Hpy99I	CGWCG	1 cut(s)	964
HpyAV	CCTTC	4 cut(s)	658, 782, 794, 963
HpyCH4III	ACNGT	4 cut(s)	15, 345, 646, 960
HpyCH4V	TGCA	3 cut(s)	464, 760, 897
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 488
HpyF3I	CTNAG	5 cut(s)	123, 164, 182, 437, 657
Hsp92II	CATG	4 cut(s)	98, 104, 248, 563
KroI	GCCGGC	1 cut(s)	872
KroNI	GCCGGC	1 cut(s)	874
Kzo9I	GATC	8 cut(s)	8, 64, 309, 364, 613, 698, 744, 949
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	2 cut(s)	134, 747
MaeI	CTAG	2 cut(s)	488, 492
MaeIII	GTNAC	5 cut(s)	20, 370, 582, 712, 890
MalI	GATC	8 cut(s)	10, 66, 311, 366, 615, 700, 746, 951
MboI	GATC	8 cut(s)	8, 64, 309, 364, 613, 698, 744, 949
MboII	GAAGA	9 cut(s)	49, 101, 233, 349, 396, 500, 623, 694, 809
MflI	RGATCY	1 cut(s)	949
MluCI	AATT	4 cut(s)	26, 206, 589, 748
MlyI	GAGTC	3 cut(s)	367, 388, 709
MmeI	TCCRAC	4 cut(s)	262, 659, 676, 942
MnlI	CCTC	5 cut(s)	52, 55, 194, 558, 901
MroNI	GCCGGC	1 cut(s)	872
MseI	TTAA	1 cut(s)	939
MslI	CAYNNNNRTG	2 cut(s)	99, 558
MspI	CCGG	4 cut(s)	677, 841, 852, 873
MspR9I	CCNGG	1 cut(s)	677
MwoI	GCNNNNNNNGC	2 cut(s)	118, 488
NaeI	GCCGGC	1 cut(s)	874
NciI	CCSGG	1 cut(s)	677
NdeII	GATC	8 cut(s)	8, 64, 309, 364, 613, 698, 744, 949
NgoMIV	GCCGGC	1 cut(s)	872
NlaIII	CATG	4 cut(s)	98, 104, 248, 563
NmuCI	GTSAC	4 cut(s)	20, 370, 712, 890
PcsI	WCGNNNNNNNCGW	1 cut(s)	968
PdiI	GCCGGC	1 cut(s)	874
PfeI	GAWTC	7 cut(s)	497, 564, 629, 668, 792, 830, 965
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	3 cut(s)	367, 388, 709
PpsI	GAGTC	3 cut(s)	367, 388, 709
PpuMI	RGGWCCY	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	44
PspPPI	RGGWCCY	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	949
RseI	CAYNNNNRTG	2 cut(s)	99, 558
SaqAI	TTAA	1 cut(s)	939
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	8 cut(s)	8, 64, 309, 364, 613, 698, 744, 949
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	3 cut(s)	367, 388, 709
ScrFI	CCNGG	1 cut(s)	677
SfaNI	GCATC	2 cut(s)	134, 747
SfcI	CTRYAG	1 cut(s)	642
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	2 cut(s)	99, 558
Sse9I	AATT	4 cut(s)	26, 206, 589, 748
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	2 cut(s)	488, 492
StyD4I	CCNGG	1 cut(s)	675
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	4 cut(s)	15, 345, 646, 960
TaqI	TCGA	3 cut(s)	142, 795, 837
TasI	AATT	4 cut(s)	26, 206, 589, 748
TfiI	GAWTC	7 cut(s)	497, 564, 629, 668, 792, 830, 965
Tru1I	TTAA	1 cut(s)	939
Tru9I	TTAA	1 cut(s)	939
TscAI	CASTG	3 cut(s)	375, 451, 651
TseFI	GTSAC	4 cut(s)	20, 370, 712, 890
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	4 cut(s)	20, 370, 712, 890
TspDTI	ATGAA	4 cut(s)	105, 500, 677, 737
TspRI	CASTG	3 cut(s)	375, 451, 651
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	2 cut(s)	488, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.