Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010132.1

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Reverse (-)

106526 .. 107203

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010132.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atggagataggcatgtataaatgtaggtggtccgccatagctgcacagttaccaaagagaacagacaatgagataaagaactactggaacacacatctaaagaagaggttagccaagatagggtttgatcctgtaacccacaagcccaagaccgccatcctcgcctctgctgagggctgcgacccgaagaacctctcaaacctcagccacatagctcagtgggaaactgctcggcttcaagcagaagctagattctccagaccgtcaaaactactcatcagtcatgaccaacctcctagatttggacccgtgcctgtaccacaatgccttgacatgaacgcaagagcacgagaaatacagttactgttaaagtcaatattagctgcagacagtggtgccgccacccacgttgggcctgaggttgcttcatttggtacagttgatgttgagggcgtgcttactaattgtgatcagtttgaagctccaagaaccagtacatcagttctgggttttgatgaagtttttggggagtccggtactaataatgactatggtgaactgttggaggcattactacagcacaaccataacagtactggatttgaagttggggatgcttggagtttagaacaacgtgcaacagtaatgatgagcgagccgggaacaacgtacatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

225

Amino Acids

24.78

Weight (kDa)

5.81

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	395
AciI	CCGC	3 cut(s)	33, 153, 399
AclWI	GGATC	1 cut(s)	122
AfaI	GTAC	6 cut(s)	318, 436, 496, 538, 595, 671
AfiI	CCNNNNNNNGG	3 cut(s)	120, 302, 411
AgsI	TTSAA	3 cut(s)	239, 479, 605
AluBI	AGCT	5 cut(s)	41, 215, 248, 383, 482
AluI	AGCT	5 cut(s)	41, 215, 248, 383, 482
Alw21I	GWGCWC	1 cut(s)	349
AlwI	GGATC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	364
AoxI	GGCC	1 cut(s)	413
ApeKI	GCWGC	3 cut(s)	41, 177, 383
AspS9I	GGNCC	3 cut(s)	30, 305, 413
AsuC2I	CCSGG	1 cut(s)	660
AsuHPI	GGTGA	1 cut(s)	566
AvaII	GGWCC	2 cut(s)	30, 305
AxyI	CCTNAGG	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	395
BauI	CACGAG	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	349
BbvCI	CCTCAGC	2 cut(s)	171, 203
BbvI	GCAGC	3 cut(s)	28, 164, 370
BccI	CCATC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	660
BfaI	CTAG	2 cut(s)	249, 297
BfmI	CTRYAG	2 cut(s)	384, 575
BisI	GCNGC	4 cut(s)	42, 178, 384, 399
BlsI	GCNGC	4 cut(s)	43, 179, 385, 400
BmcAI	AGTACT	1 cut(s)	595
Bme1390I	CCNGG	1 cut(s)	660
Bme18I	GGWCC	2 cut(s)	30, 305
BmgT120I	GGNCC	3 cut(s)	30, 305, 413
BmiI	GGNNCC	2 cut(s)	307, 397
BmrFI	CCNGG	1 cut(s)	660
BmsI	GCATC	1 cut(s)	604
BpmI	CTGGAG	1 cut(s)	241
Bpu10I	CCTNAGC	2 cut(s)	171, 203
BpuMI	CCSGG	1 cut(s)	660
BsaWI	WCCGGW	1 cut(s)	533
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 302, 411
Bse1I	ACTGG	3 cut(s)	89, 492, 601
Bse21I	CCTNAGG	1 cut(s)	417
BseGI	GGATG	2 cut(s)	156, 619
BseLI	CCNNNNNNNGG	3 cut(s)	120, 302, 411
BseMII	CTCAG	4 cut(s)	162, 217, 230, 408
BseNI	ACTGG	3 cut(s)	89, 492, 601
BseXI	GCAGC	3 cut(s)	28, 164, 370
BsgI	GTGCAG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	415
BshNI	GGYRCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	2 cut(s)	534, 659
BslI	CCNNNNNNNGG	3 cut(s)	120, 302, 411
BsnI	GGCC	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	127, 469
BspACI	CCGC	3 cut(s)	33, 153, 399
BspANI	GGCC	1 cut(s)	415
BspCNI	CTCAG	4 cut(s)	163, 216, 229, 409
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	307, 397
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	395
BsrI	ACTGG	3 cut(s)	89, 492, 601
BssMI	GATC	2 cut(s)	127, 469
BssSI	CACGAG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	348
Bst4CI	ACNGT	9 cut(s)	48, 264, 360, 366, 392, 439, 561, 593, 643
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	455, 656
BstDEI	CTNAG	4 cut(s)	171, 203, 216, 417
BstF5I	GGATG	2 cut(s)	156, 619
BstKTI	GATC	2 cut(s)	130, 472
BstMBI	GATC	2 cut(s)	127, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 161
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	658
BstSFI	CTRYAG	2 cut(s)	384, 575
BstV1I	GCAGC	3 cut(s)	28, 164, 370
Bsu36I	CCTNAGG	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	415
BtsCI	GGATG	2 cut(s)	156, 619
BtsIMutI	CAGTG	2 cut(s)	224, 397
Cac8I	GCNNGC	2 cut(s)	455, 656
CaiI	CAGNNNCTG	1 cut(s)	364
CciI	TCATGA	1 cut(s)	283
Cfr13I	GGNCC	3 cut(s)	30, 305, 413
Csp6I	GTAC	6 cut(s)	317, 435, 495, 537, 594, 670
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	3 cut(s)	13, 284, 334
CviQI	GTAC	6 cut(s)	317, 435, 495, 537, 594, 670
DdeI	CTNAG	4 cut(s)	171, 203, 216, 417
DpnI	GATC	2 cut(s)	129, 471
DpnII	GATC	2 cut(s)	127, 469
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	22
Eco47I	GGWCC	2 cut(s)	30, 305
Eco81I	CCTNAGG	1 cut(s)	417
FaeI	CATG	3 cut(s)	16, 287, 337
FaiI	YATR	8 cut(s)	14, 18, 38, 212, 285, 335, 552, 588
FatI	CATG	3 cut(s)	12, 283, 333
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	4 cut(s)	42, 178, 384, 399
FokI	GGATG	2 cut(s)	143, 626
Fsp4HI	GCNGC	4 cut(s)	42, 178, 384, 399
FspBI	CTAG	2 cut(s)	249, 297
GluI	GCNGC	4 cut(s)	42, 178, 384, 399
GsuI	CTGGAG	1 cut(s)	241
HaeIII	GGCC	1 cut(s)	415
HapII	CCGG	2 cut(s)	534, 659
Hin1II	CATG	3 cut(s)	16, 287, 337
HinfI	GANTC	2 cut(s)	252, 530
HpaII	CCGG	2 cut(s)	534, 659
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	1 cut(s)	557
Hpy188III	TCNNGA	2 cut(s)	258, 284
Hpy8I	GTNNAC	1 cut(s)	557
HpyCH4III	ACNGT	9 cut(s)	48, 264, 360, 366, 392, 439, 561, 593, 643
HpyCH4IV	ACGT	3 cut(s)	408, 634, 668
HpyCH4V	TGCA	3 cut(s)	44, 386, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 161
HpyF3I	CTNAG	4 cut(s)	171, 203, 216, 417
HpySE526I	ACGT	3 cut(s)	408, 634, 668
Hsp92II	CATG	3 cut(s)	16, 287, 337
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	127, 469
LmnI	GCTCC	1 cut(s)	487
Lsp1109I	GCAGC	3 cut(s)	28, 164, 370
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	2 cut(s)	249, 297
MaeII	ACGT	3 cut(s)	408, 634, 668
MaeIII	GTNAC	3 cut(s)	48, 133, 360
MalI	GATC	2 cut(s)	129, 471
MboI	GATC	2 cut(s)	127, 469
MboII	GAAGA	2 cut(s)	115, 199
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	1 cut(s)	463
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	1 cut(s)	543
MseI	TTAA	1 cut(s)	368
MspI	CCGG	2 cut(s)	534, 659
MspR9I	CCNGG	1 cut(s)	660
MwoI	GCNNNNNNNGC	2 cut(s)	41, 161
NciI	CCSGG	1 cut(s)	660
NdeII	GATC	2 cut(s)	127, 469
NlaIII	CATG	3 cut(s)	16, 287, 337
NlaIV	GGNNCC	2 cut(s)	307, 397
NmeAIII	GCCGAG	1 cut(s)	211
NspI	RCATGY	1 cut(s)	16
PagI	TCATGA	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	252
PkrI	GCNGC	4 cut(s)	43, 179, 385, 400
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
PspN4I	GGNNCC	2 cut(s)	307, 397
PspPI	GGNCC	3 cut(s)	30, 305, 413
PstI	CTGCAG	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	364
RsaI	GTAC	6 cut(s)	318, 436, 496, 538, 595, 671
RsaNI	GTAC	6 cut(s)	317, 435, 495, 537, 594, 670
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	4 cut(s)	42, 178, 384, 399
Sau3AI	GATC	2 cut(s)	127, 469
Sau96I	GGNCC	3 cut(s)	30, 305, 413
ScaI	AGTACT	1 cut(s)	595
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	1 cut(s)	660
SduI	GDGCHC	1 cut(s)	349
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	2 cut(s)	384, 575
SinI	GGWCC	2 cut(s)	30, 305
Sse9I	AATT	1 cut(s)	463
SsiI	CCGC	3 cut(s)	33, 153, 399
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	2 cut(s)	249, 297
StyD4I	CCNGG	1 cut(s)	658
TaaI	ACNGT	9 cut(s)	48, 264, 360, 366, 392, 439, 561, 593, 643
TaiI	ACGT	3 cut(s)	411, 637, 671
TasI	AATT	1 cut(s)	463
TatI	WGTACW	2 cut(s)	494, 593
TauI	GCSGC	1 cut(s)	401
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	2 cut(s)	224, 397
TseI	GCWGC	3 cut(s)	41, 177, 383
TspDTI	ATGAA	3 cut(s)	350, 417, 531
TspRI	CASTG	2 cut(s)	224, 397
VpaK11BI	GGWCC	2 cut(s)	30, 305
XceI	RCATGY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XspI	CTAG	2 cut(s)	249, 297
ZrmI	AGTACT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.