Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Forward (+)

33099174 .. 33100583

Gene Structure 1410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1196500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAGAAAGTATAGTTCCTATGCGGCGTCAGGGATAAAGAGAGGTGCATGGACTCCTGAAGAGGACAGAAAGCTTTTAGCTTACATTCAACTACATGGCCATGGAAGCTGGCGTTCCTTGTCCCAGAAAGCTGGCAAGTACTTATGGGATGAGTTTAGGGTTGTGGTTATTGCGAGTTGTCTAAAAAGATGCGGGAAGAGCTGTAGGCTAAGGTGGAGAAACTACCTCAGACCTGATATTAAGAGGGGAAATTTCAGTTTGCACGAAGACCAAACCATCATTCAACTCCATGCACTTCTTGGCAACAGGTGGTCGGCCATAGCTACACACTTACCAAAGAGAACAGACAACGAGATCAAGAATTACTGGAACACACATCTGAAGAAAAGGTTGGCAAAGATAGGGTTGGACCCTGCAACCCATAAGCCCAAGGCTGCCATTCTTGGCTCTGCAAATGGCGACCCCAAAAACTTGTCAAATCTCAGCCACATTGCTCAGTGGGAAAGTGCCAGGATTCAAGCCGAAGCAAGATTTGTCAAAGAATCCAAACTACGTATGCATGCATCTGCGCCAGCGGCGTCGCTTTCCGATGAGCACCATCAGTTTGCTCCACCACTAGTTCCACAGTGCCTGGACATTCTACGAGCATCCGCATGGGAAAGCCTAATATCCATGTCAAAGTCATCGTCAAGATCGGCTGCCCTAATCGACGATACAAACGGCCAGGGTAATGTTTCATTCGGTGATCATCATCATGTTCATGATCATGGTGTTAATATGGTCGGCCAAGATTATGGTCCTAATTTTGAGGATCCAACATCTGACCAACAATTATCAAGCCTGATGGGATATGATGATGCAACGCCCATGTCATCAGTGCCCACTGGATCGATGGATGTTTATGAACTTTTCGGTCAATACTGTGGTAATGAATGCAGTGAATCATTGGCGGCACTCCATCACAATATCGGGTCTGAATTCGAGGATGCTTGGAATAGTTTGGAACAAATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

339

Amino Acids

37.85

Weight (kDa)

7.74

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 76	1.5e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 92	1.2e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	82 - 127	4.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	86 - 133	5.4e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	23, 192, 575, 651, 950
AclWI	GGATC	3 cut(s)	806, 819, 895
AcoI	YGGCCR	4 cut(s)	97, 315, 721, 784
AcsI	RAATTY	2 cut(s)	250, 977
AcuI	CTGAAG	2 cut(s)	78, 401
AcyI	GRCGYC	2 cut(s)	26, 578
AfaI	GTAC	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	89, 284, 518
AhlI	ACTAGT	1 cut(s)	616
AjnI	CCWGG	3 cut(s)	509, 630, 723
AjuI	GAANNNNNNNTTGG	4 cut(s)	264, 296, 374, 406
AluBI	AGCT	6 cut(s)	73, 80, 108, 131, 201, 323
AluI	AGCT	6 cut(s)	73, 80, 108, 131, 201, 323
Alw21I	GWGCWC	1 cut(s)	597
AlwI	GGATC	3 cut(s)	806, 819, 895
AlwNI	CAGNNNCTG	1 cut(s)	631
AoxI	GGCC	4 cut(s)	97, 315, 721, 784
ApeKI	GCWGC	2 cut(s)	434, 698
ApoI	RAATTY	2 cut(s)	250, 977
ArsI	GACNNNNNNTTYG	2 cut(s)	671, 703
AspLEI	GCGC	1 cut(s)	571
AspS9I	GGNCC	2 cut(s)	409, 797
AsuHPI	GGTGA	1 cut(s)	755
AvaII	GGWCC	2 cut(s)	409, 797
BaeGI	GKGCMC	1 cut(s)	882
BalI	TGGCCA	1 cut(s)	99
BamHI	GGATCC	1 cut(s)	811
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	597
BbvI	GCAGC	2 cut(s)	421, 685
BccI	CCATC	5 cut(s)	284, 606, 838, 886, 966
BceAI	ACGGC	1 cut(s)	736
BciT130I	CCWGG	3 cut(s)	511, 632, 725
BclI	TGATCA	2 cut(s)	745, 763
BcuI	ACTAGT	1 cut(s)	616
BfaI	CTAG	1 cut(s)	617
BfmI	CTRYAG	1 cut(s)	202
BisI	GCNGC	5 cut(s)	24, 435, 576, 699, 951
BlsI	GCNGC	5 cut(s)	25, 436, 577, 700, 952
BmcAI	AGTACT	1 cut(s)	140
Bme1390I	CCNGG	3 cut(s)	511, 632, 725
Bme18I	GGWCC	2 cut(s)	409, 797
BmgT120I	GGNCC	2 cut(s)	409, 797
BmiI	GGNNCC	2 cut(s)	411, 813
BmrFI	CCNGG	3 cut(s)	511, 632, 725
BmsI	GCATC	5 cut(s)	179, 572, 656, 847, 976
BpiI	GAAGAC	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	209
Bsa29I	ATCGAT	1 cut(s)	890
BsaAI	YACGTR	1 cut(s)	554
BsaBI	GATNNNNATC	1 cut(s)	750
BsaHI	GRCGYC	2 cut(s)	26, 578
BsaJI	CCNNGG	3 cut(s)	100, 429, 724
Bse1I	ACTGG	2 cut(s)	371, 889
Bse3DI	GCAATG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	750
BseBI	CCWGG	3 cut(s)	511, 632, 725
BseCI	ATCGAT	1 cut(s)	890
BseDI	CCNNGG	3 cut(s)	100, 429, 724
BseGI	GGATG	4 cut(s)	154, 647, 901, 991
BseJI	GATNNNNATC	1 cut(s)	750
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	3 cut(s)	241, 496, 509
BseNI	ACTGG	2 cut(s)	371, 889
BseSI	GKGCMC	1 cut(s)	882
BseXI	GCAGC	2 cut(s)	421, 685
BshFI	GGCC	4 cut(s)	99, 317, 723, 786
BshVI	ATCGAT	1 cut(s)	890
BsiHKAI	GWGCWC	1 cut(s)	597
BslFI	GGGAC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	938
BsnI	GGCC	4 cut(s)	99, 317, 723, 786
Bsp1286I	GDGCHC	2 cut(s)	597, 882
Bsp143I	GATC	6 cut(s)	354, 692, 745, 763, 811, 887
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	5 cut(s)	23, 192, 575, 651, 950
BspANI	GGCC	4 cut(s)	99, 317, 723, 786
BspCNI	CTCAG	3 cut(s)	240, 495, 508
BspDI	ATCGAT	1 cut(s)	890
BspHI	TCATGA	1 cut(s)	760
BspLI	GGNNCC	2 cut(s)	411, 813
BspPI	GGATC	3 cut(s)	806, 819, 895
BspQI	GCTCTTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	489
BsrI	ACTGG	2 cut(s)	371, 889
BssECI	CCNNGG	3 cut(s)	100, 429, 724
BssMI	GATC	6 cut(s)	354, 692, 745, 763, 811, 887
BssNI	GRCGYC	2 cut(s)	26, 578
BssT1I	CCWWGG	2 cut(s)	100, 429
Bst2UI	CCWGG	3 cut(s)	511, 632, 725
Bst4CI	ACNGT	2 cut(s)	627, 923
Bst6I	CTCTTC	2 cut(s)	54, 191
BstACI	GRCGYC	2 cut(s)	26, 578
BstBAI	YACGTR	1 cut(s)	554
BstC8I	GCNNGC	4 cut(s)	110, 133, 561, 573
BstDEI	CTNAG	4 cut(s)	209, 227, 482, 495
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	4 cut(s)	154, 647, 901, 991
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	6 cut(s)	357, 695, 748, 766, 814, 890
BstMBI	GATC	6 cut(s)	354, 692, 745, 763, 811, 887
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 198, 575
BstNI	CCWGG	3 cut(s)	511, 632, 725
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	3 cut(s)	509, 630, 723
BstSFI	CTRYAG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	882
BstSNI	TACGTA	1 cut(s)	554
BstV1I	GCAGC	2 cut(s)	421, 685
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	811
BstXI	CCANNNNNNTGG	2 cut(s)	131, 794
BstYI	RGATCY	1 cut(s)	811
Bsu15I	ATCGAT	1 cut(s)	890
BsuRI	GGCC	4 cut(s)	99, 317, 723, 786
BsuTUI	ATCGAT	1 cut(s)	890
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	4 cut(s)	154, 647, 901, 991
BtsI	GCAGTG	1 cut(s)	943
BtsIMutI	CAGTG	5 cut(s)	503, 632, 882, 882, 943
Cac8I	GCNNGC	4 cut(s)	110, 133, 561, 573
CaiI	CAGNNNCTG	1 cut(s)	631
CciI	TCATGA	1 cut(s)	760
CfoI	GCGC	1 cut(s)	571
Cfr13I	GGNCC	2 cut(s)	409, 797
ClaI	ATCGAT	1 cut(s)	890
CseI	GACGC	2 cut(s)	15, 567
Csp6I	GTAC	1 cut(s)	139
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	4 cut(s)	209, 227, 482, 495
DpnI	GATC	6 cut(s)	356, 694, 747, 765, 813, 889
DpnII	GATC	6 cut(s)	354, 692, 745, 763, 811, 887
EaeI	YGGCCR	4 cut(s)	97, 315, 721, 784
Eam1104I	CTCTTC	2 cut(s)	54, 191
EarI	CTCTTC	2 cut(s)	54, 191
Eco105I	TACGTA	1 cut(s)	554
Eco130I	CCWWGG	2 cut(s)	100, 429
Eco47I	GGWCC	2 cut(s)	409, 797
Eco57I	CTGAAG	2 cut(s)	78, 401
EcoRI	GAATTC	1 cut(s)	977
EcoRII	CCWGG	3 cut(s)	509, 630, 723
EcoT14I	CCWWGG	2 cut(s)	100, 429
EcoT22I	ATGCAT	2 cut(s)	561, 565
ErhI	CCWWGG	2 cut(s)	100, 429
FaqI	GGGAC	1 cut(s)	106
FauI	CCCGC	1 cut(s)	185
FbaI	TGATCA	2 cut(s)	745, 763
Fnu4HI	GCNGC	5 cut(s)	24, 435, 576, 699, 951
FokI	GGATG	4 cut(s)	161, 634, 908, 998
Fsp4HI	GCNGC	5 cut(s)	24, 435, 576, 699, 951
FspBI	CTAG	1 cut(s)	617
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	5 cut(s)	24, 435, 576, 699, 951
HaeIII	GGCC	4 cut(s)	99, 317, 723, 786
HgaI	GACGC	2 cut(s)	15, 567
HhaI	GCGC	1 cut(s)	571
Hin1I	GRCGYC	2 cut(s)	26, 578
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	4 cut(s)	52, 514, 542, 941
HphI	GGTGA	1 cut(s)	755
Hpy188I	TCNGA	5 cut(s)	230, 381, 589, 823, 976
Hpy188III	TCNNGA	4 cut(s)	56, 358, 690, 761
Hpy99I	CGWCG	2 cut(s)	583, 713
HpyCH4III	ACNGT	2 cut(s)	627, 923
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	9 cut(s)	47, 262, 293, 416, 452, 559, 563, 860, 936
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 198, 575
HpyF3I	CTNAG	4 cut(s)	209, 227, 482, 495
HpySE526I	ACGT	1 cut(s)	553
Hsp92I	GRCGYC	2 cut(s)	26, 578
HspAI	GCGC	1 cut(s)	569
Ksp22I	TGATCA	2 cut(s)	745, 763
Kzo9I	GATC	6 cut(s)	354, 692, 745, 763, 811, 887
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	613
Lsp1109I	GCAGC	2 cut(s)	421, 685
LweI	GCATC	5 cut(s)	179, 572, 656, 847, 976
MaeI	CTAG	1 cut(s)	617
MaeII	ACGT	1 cut(s)	553
MalI	GATC	6 cut(s)	356, 694, 747, 765, 813, 889
MboI	GATC	6 cut(s)	354, 692, 745, 763, 811, 887
MboII	GAAGA	4 cut(s)	71, 208, 278, 394
MflI	RGATCY	1 cut(s)	811
MhlI	GDGCHC	2 cut(s)	597, 882
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	6 cut(s)	250, 361, 802, 830, 977, 1008
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	2 cut(s)	387, 839
MnlI	CCTC	6 cut(s)	35, 55, 236, 237, 802, 976
Mox20I	TGGCCA	1 cut(s)	99
Mph1103I	ATGCAT	2 cut(s)	561, 565
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	2 cut(s)	240, 774
MslI	CAYNNNNRTG	5 cut(s)	99, 652, 753, 759, 765
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	575
MspR9I	CCNGG	3 cut(s)	511, 632, 725
Mva1269I	GAATGC	1 cut(s)	938
MvaI	CCWGG	3 cut(s)	511, 632, 725
MwoI	GCNNNNNNNGC	3 cut(s)	105, 198, 575
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	6 cut(s)	354, 692, 745, 763, 811, 887
NlaIV	GGNNCC	2 cut(s)	411, 813
NsiI	ATGCAT	2 cut(s)	561, 565
NspI	RCATGY	1 cut(s)	563
PaeI	GCATGC	1 cut(s)	563
PagI	TCATGA	1 cut(s)	760
PciSI	GCTCTTC	1 cut(s)	191
PctI	GAATGC	1 cut(s)	938
PfeI	GAWTC	3 cut(s)	514, 542, 941
PkrI	GCNGC	5 cut(s)	25, 436, 577, 700, 952
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Ppu21I	YACGTR	1 cut(s)	554
Psp6I	CCWGG	3 cut(s)	509, 630, 723
PspGI	CCWGG	3 cut(s)	509, 630, 723
PspN4I	GGNNCC	2 cut(s)	411, 813
PspPI	GGNCC	2 cut(s)	409, 797
PstNI	CAGNNNCTG	1 cut(s)	631
PsuI	RGATCY	1 cut(s)	811
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	5 cut(s)	99, 652, 753, 759, 765
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	240, 774
SatI	GCNGC	5 cut(s)	24, 435, 576, 699, 951
Sau3AI	GATC	6 cut(s)	354, 692, 745, 763, 811, 887
Sau96I	GGNCC	2 cut(s)	409, 797
ScaI	AGTACT	1 cut(s)	140
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	3 cut(s)	511, 632, 725
SduI	GDGCHC	2 cut(s)	597, 882
SfaNI	GCATC	5 cut(s)	179, 572, 656, 847, 976
SfcI	CTRYAG	1 cut(s)	202
SinI	GGWCC	2 cut(s)	409, 797
SmiMI	CAYNNNNRTG	5 cut(s)	99, 652, 753, 759, 765
SnaBI	TACGTA	1 cut(s)	554
SpeI	ACTAGT	1 cut(s)	616
SphI	GCATGC	1 cut(s)	563
Sse9I	AATT	6 cut(s)	250, 361, 802, 830, 977, 1008
SsiI	CCGC	5 cut(s)	23, 192, 575, 651, 950
SspMI	CTAG	1 cut(s)	617
StyD4I	CCNGG	3 cut(s)	509, 630, 723
StyI	CCWWGG	2 cut(s)	100, 429
TaaI	ACNGT	2 cut(s)	627, 923
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	3 cut(s)	708, 890, 981
TaqII	GACCGA	1 cut(s)	902
TasI	AATT	6 cut(s)	250, 361, 802, 830, 977, 1008
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	3 cut(s)	26, 578, 953
TfiI	GAWTC	3 cut(s)	514, 542, 941
Tru1I	TTAA	2 cut(s)	240, 774
Tru9I	TTAA	2 cut(s)	240, 774
TscAI	CASTG	5 cut(s)	503, 632, 882, 889, 943
TseI	GCWGC	2 cut(s)	434, 698
TspDTI	ATGAA	4 cut(s)	726, 749, 918, 945
TspRI	CASTG	5 cut(s)	503, 632, 882, 889, 943
VpaK11BI	GGWCC	2 cut(s)	409, 797
XapI	RAATTY	2 cut(s)	250, 977
XceI	RCATGY	1 cut(s)	563
XcmI	CCANNNNNNNNNTGG	2 cut(s)	296, 889
XspI	CTAG	1 cut(s)	617
ZrmI	AGTACT	1 cut(s)	140
Zsp2I	ATGCAT	2 cut(s)	561, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.