Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Forward (+)

53500673 .. 53501616

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00259110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGATTATTTTCTATTCCAAGTGGTCAGCCATAGCTGCGAACTTACCAAGGAGAACAGACAATGAGATAAAGAACTACTGGAACACACATCTAAAGAAGAGGTTAGCCAAGACAGGGTTTGATCCTGTAACCCACAAACCCAAAACCGCCATCCTTGCCTCTGCTAATGGCGACCCAAAGAACCTGTCAAACCTCAGCCACATAGCTCAGTGGGAAAGTGCTAGGCTTCAAGCAGAAGCTAGATTTGTGAGACAGTCAAAACTACTCAAACCAGCACCACCAGCACCACCAGCACCACAGTGCCTTGACTTCAATTTAAGAACATGGGAAACCCTAATGATGTCAAAGTCATTAGCTGCAGGCGGTGGTGGTGGCGACGAAGCCGGTAGTGTTGGTCGTGCCACTAATGTTGTTCAAGAGGTTGGTTCATTCGGTAATTTTGACGGTGTACTTGGTAATAATGGTAGACAGTTTGAAGTTCCAAAATTAACCATACCAGCAGCTCCGGATTTCAATGAAGTTTCAGAGGAGAGTGGTACTGATGAATACGGTGACCTATTTGAGGCACTACTACTCCAGCAGAGCTACAATAATACTGGGTTTGATGTCGTGGATGCTTGGACTTTGGAACAATGTAATGATATCAGTGCAGACTATCAAAATGTGACCATGAGCGCGCGGGGGTTGAAAAACCTATTTATGTTCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

236

Amino Acids

25.99

Weight (kDa)

5.96

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	7 - 31	1.4e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	466
AccII	CGCG	2 cut(s)	677, 679
AccIII	TCCGGA	1 cut(s)	505
AciI	CCGC	3 cut(s)	147, 363, 679
AclWI	GGATC	1 cut(s)	116
AfaI	GTAC	2 cut(s)	450, 538
AfiI	CCNNNNNNNGG	2 cut(s)	114, 562
AgsI	TTSAA	6 cut(s)	230, 313, 416, 476, 514, 688
AleI	CACNNNNGTG	1 cut(s)	298
AluBI	AGCT	6 cut(s)	35, 206, 239, 356, 503, 585
AluI	AGCT	6 cut(s)	35, 206, 239, 356, 503, 585
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	505
ApeKI	GCWGC	3 cut(s)	35, 356, 500
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspLEI	GCGC	2 cut(s)	677, 679
AsuHPI	GGTGA	1 cut(s)	563
BbvCI	CCTCAGC	1 cut(s)	194
BbvI	GCAGC	3 cut(s)	22, 343, 512
BccI	CCATC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	2 cut(s)	222, 240
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	3 cut(s)	36, 357, 501
BlsI	GCNGC	3 cut(s)	37, 358, 502
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	1 cut(s)	604
BmuI	ACTGGG	1 cut(s)	606
BpmI	CTGGAG	1 cut(s)	560
Bpu10I	CCTNAGC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	2 cut(s)	505, 705
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 562
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	2 cut(s)	83, 601
BseAI	TCCGGA	1 cut(s)	505
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	2 cut(s)	150, 619
BseLI	CCNNNNNNNGG	2 cut(s)	114, 562
BseMII	CTCAG	2 cut(s)	208, 221
BseNI	ACTGG	2 cut(s)	83, 601
BsePI	GCGCGC	1 cut(s)	675
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	3 cut(s)	22, 343, 512
BsgI	GTGCAG	1 cut(s)	669
Bsh1236I	CGCG	2 cut(s)	677, 679
BsiSI	CCGG	3 cut(s)	384, 506, 706
BslI	CCNNNNNNNGG	2 cut(s)	114, 562
BsmAI	GTCTC	1 cut(s)	244
Bsp13I	TCCGGA	1 cut(s)	505
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	3 cut(s)	147, 363, 679
BspCNI	CTCAG	2 cut(s)	207, 220
BspEI	TCCGGA	1 cut(s)	505
BspFNI	CGCG	2 cut(s)	677, 679
BspMAI	CTGCAG	1 cut(s)	361
BspPI	GGATC	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	383
BsrI	ACTGG	2 cut(s)	83, 601
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	47
BssHII	GCGCGC	1 cut(s)	675
BssMI	GATC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	47
Bst4CI	ACNGT	5 cut(s)	255, 300, 446, 471, 551
Bst6I	CTCTTC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	361, 677
BstDEI	CTNAG	2 cut(s)	194, 207
BstEII	GGTNACC	1 cut(s)	551
BstENI	CCTNNNNNAGG	1 cut(s)	560
BstF5I	GGATG	2 cut(s)	150, 619
BstFNI	CGCG	2 cut(s)	677, 679
BstHHI	GCGC	2 cut(s)	677, 679
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 155, 281, 290
BstPI	GGTNACC	1 cut(s)	551
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	2 cut(s)	677, 679
BstV1I	GCAGC	3 cut(s)	22, 343, 512
BtsCI	GGATG	2 cut(s)	150, 619
BtsIMutI	CAGTG	3 cut(s)	215, 305, 652
Cac8I	GCNNGC	2 cut(s)	361, 677
CfoI	GCGC	2 cut(s)	677, 679
Cfr10I	RCCGGY	1 cut(s)	383
Csp6I	GTAC	2 cut(s)	449, 537
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	2 cut(s)	324, 670
CviQI	GTAC	2 cut(s)	449, 537
DdeI	CTNAG	2 cut(s)	194, 207
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	47
Eco32I	GATATC	1 cut(s)	643
Eco91I	GGTNACC	1 cut(s)	551
EcoNI	CCTNNNNNAGG	1 cut(s)	560
EcoO65I	GGTNACC	1 cut(s)	551
EcoRV	GATATC	1 cut(s)	643
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	2 cut(s)	327, 673
FaiI	YATR	6 cut(s)	32, 203, 325, 494, 671, 701
FatI	CATG	2 cut(s)	323, 669
FauI	CCCGC	1 cut(s)	672
FblI	GTMKAC	1 cut(s)	466
Fnu4HI	GCNGC	3 cut(s)	36, 357, 501
FokI	GGATG	2 cut(s)	137, 626
Fsp4HI	GCNGC	3 cut(s)	36, 357, 501
FspBI	CTAG	2 cut(s)	222, 240
GlaI	GCGC	2 cut(s)	676, 678
GluI	GCNGC	3 cut(s)	36, 357, 501
GsuI	CTGGAG	1 cut(s)	560
HapII	CCGG	3 cut(s)	384, 506, 706
HhaI	GCGC	2 cut(s)	677, 679
Hin1II	CATG	2 cut(s)	327, 673
Hin6I	GCGC	2 cut(s)	675, 677
HinP1I	GCGC	2 cut(s)	675, 677
HpaII	CCGG	3 cut(s)	384, 506, 706
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	2 cut(s)	449, 467
Hpy188I	TCNGA	1 cut(s)	526
Hpy188III	TCNNGA	2 cut(s)	416, 506
Hpy8I	GTNNAC	2 cut(s)	449, 467
Hpy99I	CGWCG	1 cut(s)	380
HpyCH4III	ACNGT	5 cut(s)	255, 300, 446, 471, 551
HpyCH4V	TGCA	2 cut(s)	359, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 155, 281, 290
HpyF3I	CTNAG	2 cut(s)	194, 207
Hsp92II	CATG	2 cut(s)	327, 673
HspAI	GCGC	2 cut(s)	675, 677
Kpn2I	TCCGGA	1 cut(s)	505
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	3 cut(s)	22, 343, 512
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	2 cut(s)	222, 240
MaeIII	GTNAC	3 cut(s)	127, 551, 664
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	109
MluCI	AATT	3 cut(s)	313, 436, 485
MnlI	CCTC	6 cut(s)	93, 169, 203, 412, 520, 556
MroI	TCCGGA	1 cut(s)	505
MseI	TTAA	2 cut(s)	317, 488
MslI	CAYNNNNRTG	1 cut(s)	298
MspI	CCGG	3 cut(s)	384, 506, 706
MvnI	CGCG	2 cut(s)	677, 679
MwoI	GCNNNNNNNGC	4 cut(s)	35, 155, 281, 290
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	2 cut(s)	327, 673
NmuCI	GTSAC	2 cut(s)	551, 664
OliI	CACNNNNGTG	1 cut(s)	298
PauI	GCGCGC	1 cut(s)	675
PkrI	GCNGC	3 cut(s)	37, 358, 502
PspEI	GGTNACC	1 cut(s)	551
PstI	CTGCAG	1 cut(s)	361
PteI	GCGCGC	1 cut(s)	675
RsaI	GTAC	2 cut(s)	450, 538
RsaNI	GTAC	2 cut(s)	449, 537
RseI	CAYNNNNRTG	1 cut(s)	298
SaqAI	TTAA	2 cut(s)	317, 488
SatI	GCNGC	3 cut(s)	36, 357, 501
Sau3AI	GATC	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	298
Sse9I	AATT	3 cut(s)	313, 436, 485
SsiI	CCGC	3 cut(s)	147, 363, 679
SspMI	CTAG	2 cut(s)	222, 240
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	5 cut(s)	255, 300, 446, 471, 551
TasI	AATT	3 cut(s)	313, 436, 485
TatI	WGTACW	1 cut(s)	448
Tru1I	TTAA	2 cut(s)	317, 488
Tru9I	TTAA	2 cut(s)	317, 488
TscAI	CASTG	3 cut(s)	215, 305, 652
TseFI	GTSAC	2 cut(s)	551, 664
TseI	GCWGC	3 cut(s)	35, 356, 500
Tsp45I	GTSAC	2 cut(s)	551, 664
TspDTI	ATGAA	3 cut(s)	417, 531, 558
TspRI	CASTG	3 cut(s)	215, 305, 652
XagI	CCTNNNNNAGG	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	466
XspI	CTAG	2 cut(s)	222, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.