Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Reverse (-)

82741464 .. 82744153

Gene Structure 2690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG597400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGGAATCGATCCGGTTACCCACAAGCCCAAAAACGACGCCCTGCTCTCCACTCACGACGGTCAGTCCAAGAACGCCGCCAATCTCAGCCACATGGCTCAGTGGGAAAGCGCCAGGCTTGAAGCCGAAGCCCGGCTCGTTAGGGAATCAAAGCTCCGGTCGCACAACTCCCTCATCAATCAGCTGACCTCAGCAGCTGCGGCCGCTGCGGCGGCTGCTGCTTCAACTTCATCCTCATCAGCTCATCAGTTGCTTTTCATGAAGGGTCAAAGTCTTGAGTCTCCAACATCTACACTCACCACTTACAACTCTGAGAATGTGGTACCTGGGATTATGCCGTCGTCTATGATTGAGTTTGTGGGTTGTTCCGGTGCTTCTTCCGGTGATCATCAAGATCAGACGGCTGCAATTAACGCCAAAGAAGAAGGGGACGTACAAGTACAAGATTGGAAACTAGGGTTTGGGAACGTGCCGTCATCATCAACCCACTTTGGCCTTCATGATAATGTCACATGGACAAGTAATAATGAACAAGTTCATCATGATCGGGGAATTGGCAGCGTTGATGAGGTCGCGGATCAAGAAGGGTTTACCAATCTCTTGCTTAATAACTCCGTTGATCGTGATCAGAGTATGTCGGATGGAGGCGGTGGTGATTCAGAAAACGGTGGTAGTGCCGGGAGTGACTATTATGAAGATAACAAGAATTACTGGAACAGTATTCTGAATTTGGTGAATTCTTCTCCCTCTCATGATGATTCTCCAATATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008150 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009739 GO:0009751 GO:0009753 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010033 GO:0010035 GO:0010038 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0035017 GO:0042221 GO:0042335 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048468 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901957 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

257

Amino Acids

27.34

Weight (kDa)

4.7

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	322
AccB1I	GGYRCC	1 cut(s)	322
AccII	CGCG	1 cut(s)	575
AciI	CCGC	7 cut(s)	78, 200, 204, 209, 212, 575, 648
AclWI	GGATC	2 cut(s)	5, 585
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	2 cut(s)	727, 736
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	3 cut(s)	324, 435, 441
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	2 cut(s)	122, 225
AhdI	GACNNNNNGTC	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	113, 325
AluBI	AGCT	4 cut(s)	154, 184, 197, 242
AluI	AGCT	4 cut(s)	154, 184, 197, 242
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	2 cut(s)	5, 585
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	201, 493
ApeKI	GCWGC	7 cut(s)	194, 197, 206, 215, 218, 404, 558
ApoI	RAATTY	2 cut(s)	727, 736
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
Asp700I	GAANNNNTTC	1 cut(s)	534
Asp718I	GGTACC	1 cut(s)	322
AspLEI	GCGC	1 cut(s)	113
AsuC2I	CCSGG	2 cut(s)	133, 679
AsuHPI	GGTGA	4 cut(s)	289, 395, 665, 745
BanI	GGYRCC	1 cut(s)	322
BarI	GAAGNNNNNNTAC	2 cut(s)	417, 449
BbvCI	CCTCAGC	1 cut(s)	190
BbvI	GCAGC	7 cut(s)	184, 193, 202, 205, 206, 391, 570
BccI	CCATC	1 cut(s)	635
BceAI	ACGGC	3 cut(s)	322, 417, 457
BciT130I	CCWGG	2 cut(s)	115, 327
BclI	TGATCA	2 cut(s)	385, 625
BcnI	CCSGG	2 cut(s)	133, 679
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	455
BfoI	RGCGCY	1 cut(s)	114
BglI	GCCNNNNNGGC	1 cut(s)	209
Bme1390I	CCNGG	4 cut(s)	115, 133, 327, 679
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	4 cut(s)	115, 133, 327, 679
Bpu10I	CCTNAGC	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	2 cut(s)	133, 679
Bsa29I	ATCGAT	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	624
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	326
BsaWI	WCCGGW	4 cut(s)	13, 156, 368, 380
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	716
Bse8I	GATNNNNATC	1 cut(s)	624
BseBI	CCWGG	2 cut(s)	115, 327
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	2 cut(s)	230, 646
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMII	CTCAG	4 cut(s)	100, 113, 204, 303
BseNI	ACTGG	1 cut(s)	716
BseX3I	CGGCCG	1 cut(s)	201
BseXI	GCAGC	7 cut(s)	184, 193, 202, 205, 206, 391, 570
Bsh1236I	CGCG	1 cut(s)	575
Bsh1285I	CGRYCG	2 cut(s)	161, 204
BshFI	GGCC	2 cut(s)	203, 495
BshNI	GGYRCC	1 cut(s)	322
BshVI	ATCGAT	1 cut(s)	9
BsiEI	CGRYCG	2 cut(s)	161, 204
BsiSI	CCGG	6 cut(s)	14, 133, 157, 369, 381, 678
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	2 cut(s)	203, 495
Bsp143I	GATC	7 cut(s)	10, 385, 394, 544, 577, 619, 625
BspACI	CCGC	7 cut(s)	78, 200, 204, 209, 212, 575, 648
BspANI	GGCC	2 cut(s)	203, 495
BspCNI	CTCAG	4 cut(s)	99, 112, 203, 304
BspDI	ATCGAT	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	575
BspHI	TCATGA	4 cut(s)	258, 499, 541, 751
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	2 cut(s)	5, 585
BspT107I	GGYRCC	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	716
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	7 cut(s)	10, 385, 394, 544, 577, 619, 625
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	115, 327
Bst4CI	ACNGT	3 cut(s)	62, 668, 719
BstACI	GRCGYC	1 cut(s)	39
BstDEI	CTNAG	4 cut(s)	86, 99, 190, 312
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	230, 646
BstFNI	CGCG	1 cut(s)	575
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	7 cut(s)	13, 388, 397, 547, 580, 622, 628
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	7 cut(s)	10, 385, 394, 544, 577, 619, 625
BstMCI	CGRYCG	2 cut(s)	161, 204
BstMWI	GCNNNNNNNGC	9 cut(s)	160, 200, 203, 206, 209, 212, 215, 218, 413
BstNI	CCWGG	2 cut(s)	115, 327
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	4 cut(s)	113, 131, 325, 677
BstUI	CGCG	1 cut(s)	575
BstV1I	GCAGC	7 cut(s)	184, 193, 202, 205, 206, 391, 570
BstZI	CGGCCG	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	2 cut(s)	203, 495
BsuTUI	ATCGAT	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	230, 646
BtsIMutI	CAGTG	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	197
CciI	TCATGA	4 cut(s)	258, 499, 541, 751
CciNI	GCGGCCGC	1 cut(s)	201
CfoI	GCGC	1 cut(s)	113
ClaI	ATCGAT	1 cut(s)	9
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	3 cut(s)	323, 434, 440
CviAII	CATG	6 cut(s)	94, 259, 500, 513, 542, 752
CviQI	GTAC	3 cut(s)	323, 434, 440
DdeI	CTNAG	4 cut(s)	86, 99, 190, 312
DpnI	GATC	7 cut(s)	12, 387, 396, 546, 579, 621, 627
DpnII	GATC	7 cut(s)	10, 385, 394, 544, 577, 619, 625
DriI	GACNNNNNGTC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	201
EagI	CGGCCG	1 cut(s)	201
Eam1105I	GACNNNNNGTC	1 cut(s)	64
EclXI	CGGCCG	1 cut(s)	201
Eco52I	CGGCCG	1 cut(s)	201
Eco91I	GGTNACC	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	736
EcoRII	CCWGG	2 cut(s)	113, 325
FaeI	CATG	6 cut(s)	97, 262, 503, 516, 545, 755
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	6 cut(s)	93, 258, 499, 512, 541, 751
FbaI	TGATCA	2 cut(s)	385, 625
FokI	GGATG	2 cut(s)	217, 653
FspBI	CTAG	1 cut(s)	455
GlaI	GCGC	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	203, 495
HapII	CCGG	6 cut(s)	14, 133, 157, 369, 381, 678
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	6 cut(s)	97, 262, 503, 516, 545, 755
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	5 cut(s)	6, 146, 278, 656, 758
HpaII	CCGG	6 cut(s)	14, 133, 157, 369, 381, 678
HphI	GGTGA	4 cut(s)	289, 395, 665, 745
Hpy166II	GTNNAC	1 cut(s)	591
Hpy188I	TCNGA	6 cut(s)	313, 399, 630, 640, 661, 726
Hpy188III	TCNNGA	9 cut(s)	56, 259, 275, 392, 500, 542, 581, 623, 752
Hpy8I	GTNNAC	1 cut(s)	591
Hpy99I	CGWCG	3 cut(s)	41, 62, 343
HpyAV	CCTTC	4 cut(s)	256, 419, 506, 578
HpyCH4III	ACNGT	3 cut(s)	62, 668, 719
HpyCH4IV	ACGT	2 cut(s)	432, 468
HpyCH4V	TGCA	1 cut(s)	407
HpyF10VI	GCNNNNNNNGC	9 cut(s)	160, 200, 203, 206, 209, 212, 215, 218, 413
HpyF3I	CTNAG	4 cut(s)	86, 99, 190, 312
HpySE526I	ACGT	2 cut(s)	432, 468
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	6 cut(s)	97, 262, 503, 516, 545, 755
HspAI	GCGC	1 cut(s)	111
KpnI	GGTACC	1 cut(s)	326
Ksp22I	TGATCA	2 cut(s)	385, 625
Kzo9I	GATC	7 cut(s)	10, 385, 394, 544, 577, 619, 625
LmnI	GCTCC	1 cut(s)	159
Lsp1109I	GCAGC	7 cut(s)	184, 193, 202, 205, 206, 391, 570
MaeI	CTAG	1 cut(s)	455
MaeII	ACGT	2 cut(s)	432, 468
MaeIII	GTNAC	3 cut(s)	16, 508, 683
MalI	GATC	7 cut(s)	12, 387, 396, 546, 579, 621, 627
MboI	GATC	7 cut(s)	10, 385, 394, 544, 577, 619, 625
MboII	GAAGA	4 cut(s)	369, 434, 707, 732
MluCI	AATT	5 cut(s)	408, 552, 706, 727, 736
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	2 cut(s)	308, 618
MnlI	CCTC	6 cut(s)	182, 199, 244, 562, 638, 757
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	2 cut(s)	411, 606
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	3 cut(s)	184, 197, 206
MspI	CCGG	6 cut(s)	14, 133, 157, 369, 381, 678
MspR9I	CCNGG	4 cut(s)	115, 133, 327, 679
MvaI	CCWGG	2 cut(s)	115, 327
MvnI	CGCG	1 cut(s)	575
MwoI	GCNNNNNNNGC	9 cut(s)	160, 200, 203, 206, 209, 212, 215, 218, 413
NciI	CCSGG	2 cut(s)	133, 679
NdeII	GATC	7 cut(s)	10, 385, 394, 544, 577, 619, 625
NlaIII	CATG	6 cut(s)	97, 262, 503, 516, 545, 755
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	2 cut(s)	508, 683
NotI	GCGGCCGC	1 cut(s)	201
PagI	TCATGA	4 cut(s)	258, 499, 541, 751
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	4 cut(s)	6, 146, 656, 758
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp6I	CCWGG	2 cut(s)	113, 325
PspEI	GGTNACC	1 cut(s)	16
PspGI	CCWGG	2 cut(s)	113, 325
PspN4I	GGNNCC	1 cut(s)	324
PstNI	CAGNNNCTG	1 cut(s)	197
PvuII	CAGCTG	2 cut(s)	184, 197
RsaI	GTAC	3 cut(s)	324, 435, 441
RsaNI	GTAC	3 cut(s)	323, 434, 440
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	411, 606
Sau3AI	GATC	7 cut(s)	10, 385, 394, 544, 577, 619, 625
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	4 cut(s)	115, 133, 327, 679
SetI	ASST	9 cut(s)	156, 186, 191, 199, 244, 328, 435, 471, 573
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	5 cut(s)	408, 552, 706, 727, 736
SsiI	CCGC	7 cut(s)	78, 200, 204, 209, 212, 575, 648
SspI	AATATT	1 cut(s)	768
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	4 cut(s)	113, 131, 325, 677
TaaI	ACNGT	3 cut(s)	62, 668, 719
TaiI	ACGT	2 cut(s)	435, 471
TaqI	TCGA	1 cut(s)	9
TasI	AATT	5 cut(s)	408, 552, 706, 727, 736
TatI	WGTACW	1 cut(s)	439
TauI	GCSGC	5 cut(s)	80, 203, 206, 212, 215
TfiI	GAWTC	4 cut(s)	6, 146, 656, 758
Tru1I	TTAA	2 cut(s)	411, 606
Tru9I	TTAA	2 cut(s)	411, 606
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	2 cut(s)	508, 683
TseI	GCWGC	7 cut(s)	194, 197, 206, 215, 218, 404, 558
Tsp45I	GTSAC	2 cut(s)	508, 683
TspDTI	ATGAA	7 cut(s)	219, 247, 275, 488, 527, 543, 708
TspGWI	ACGGA	1 cut(s)	604
TspRI	CASTG	1 cut(s)	107
XapI	RAATTY	2 cut(s)	727, 736
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.