Transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Myb_DNA-binding | PF00249 | 15 - 62 | 2.5e-14 | Myb-like DNA-binding domain |
| Myb_DNA-bind_6 | PF13921 | 18 - 78 | 2.1e-12 | Myb-like DNA-binding domain |
| Myb_DNA-binding | PF00249 | 68 - 113 | 3e-16 | Myb-like DNA-binding domain |
| Myb_DNA-bind_6 | PF13921 | 71 - 123 | 3e-09 | Myb-like DNA-binding domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 635 |
| AciI | CCGC | 2 cut(s) | 393, 1284 |
| AclWI | GGATC | 2 cut(s) | 362, 1283 |
| AcoI | YGGCCR | 1 cut(s) | 1172 |
| AcsI | RAATTY | 2 cut(s) | 208, 594 |
| AcuI | CTGAAG | 1 cut(s) | 1107 |
| AfaI | GTAC | 3 cut(s) | 664, 763, 805 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 360, 542, 678, 1186, 1253 |
| AflIII | ACRYGT | 1 cut(s) | 97 |
| AgsI | TTSAA | 3 cut(s) | 92, 479, 872 |
| AjnI | CCWGG | 2 cut(s) | 31, 1162 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 922, 954 |
| Alw21I | GWGCWC | 1 cut(s) | 589 |
| Alw26I | GTCTC | 1 cut(s) | 143 |
| AlwI | GGATC | 2 cut(s) | 362, 1283 |
| AoxI | GGCC | 2 cut(s) | 1172, 1198 |
| ApeKI | GCWGC | 7 cut(s) | 159, 281, 623, 1073, 1154, 1243, 1281 |
| ApoI | RAATTY | 2 cut(s) | 208, 594 |
| AspLEI | GCGC | 1 cut(s) | 1243 |
| AspS9I | GGNCC | 3 cut(s) | 47, 270, 545 |
| AsuC2I | CCSGG | 3 cut(s) | 927, 1171, 1248 |
| AsuHPI | GGTGA | 1 cut(s) | 833 |
| AvaII | GGWCC | 3 cut(s) | 47, 270, 545 |
| AxyI | CCTNAGG | 1 cut(s) | 60 |
| BaeGI | GKGCMC | 1 cut(s) | 640 |
| BanI | GGYRCC | 1 cut(s) | 635 |
| BanII | GRGCYC | 1 cut(s) | 1369 |
| BauI | CACGAG | 1 cut(s) | 588 |
| BbsI | GAAGAC | 2 cut(s) | 231, 1198 |
| Bbv12I | GWGCWC | 1 cut(s) | 589 |
| BbvCI | CCTCAGC | 1 cut(s) | 443 |
| BbvI | GCAGC | 7 cut(s) | 146, 268, 610, 1060, 1166, 1230, 1293 |
| BccI | CCATC | 4 cut(s) | 165, 242, 404, 407 |
| BceAI | ACGGC | 2 cut(s) | 1213, 1213 |
| BciT130I | CCWGG | 2 cut(s) | 33, 1164 |
| BciVI | GTATCC | 1 cut(s) | 874 |
| BclI | TGATCA | 1 cut(s) | 736 |
| BcnI | CCSGG | 3 cut(s) | 927, 1171, 1248 |
| BcoDI | GTCTC | 1 cut(s) | 143 |
| BfaI | CTAG | 3 cut(s) | 489, 537, 1064 |
| BfmI | CTRYAG | 5 cut(s) | 160, 624, 842, 1152, 1279 |
| BfoI | RGCGCY | 1 cut(s) | 1244 |
| BfuI | GTATCC | 1 cut(s) | 874 |
| BisI | GCNGC | 8 cut(s) | 160, 282, 624, 1074, 1155, 1244, 1282, 1285 |
| BlsI | GCNGC | 8 cut(s) | 161, 283, 625, 1075, 1156, 1245, 1283, 1286 |
| Bme1390I | CCNGG | 5 cut(s) | 33, 927, 1164, 1171, 1248 |
| Bme18I | GGWCC | 3 cut(s) | 47, 270, 545 |
| BmgT120I | GGNCC | 3 cut(s) | 47, 270, 545 |
| BmiI | GGNNCC | 4 cut(s) | 547, 637, 750, 1168 |
| BmrFI | CCNGG | 5 cut(s) | 33, 927, 1164, 1171, 1248 |
| BmsI | GCATC | 1 cut(s) | 35 |
| BpiI | GAAGAC | 2 cut(s) | 231, 1198 |
| BpmI | CTGGAG | 2 cut(s) | 481, 1050 |
| Bpu10I | CCTNAGC | 1 cut(s) | 443 |
| BpuMI | CCSGG | 3 cut(s) | 927, 1171, 1248 |
| BsaI | GGTCTC | 1 cut(s) | 143 |
| BsaJI | CCNNGG | 5 cut(s) | 50, 103, 1162, 1229, 1247 |
| BsaWI | WCCGGW | 1 cut(s) | 800 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 360, 542, 678, 1186, 1253 |
| Bse1I | ACTGG | 4 cut(s) | 329, 759, 868, 1103 |
| Bse21I | CCTNAGG | 1 cut(s) | 60 |
| BseBI | CCWGG | 2 cut(s) | 33, 1164 |
| BseDI | CCNNGG | 5 cut(s) | 50, 103, 1162, 1229, 1247 |
| BseGI | GGATG | 2 cut(s) | 396, 1240 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 360, 542, 678, 1186, 1253 |
| BseMII | CTCAG | 3 cut(s) | 74, 457, 470 |
| BseNI | ACTGG | 4 cut(s) | 329, 759, 868, 1103 |
| BseRI | GAGGAG | 2 cut(s) | 48, 1169 |
| BseSI | GKGCMC | 1 cut(s) | 640 |
| BseXI | GCAGC | 7 cut(s) | 146, 268, 610, 1060, 1166, 1230, 1293 |
| BseYI | CCCAGC | 1 cut(s) | 1362 |
| BsgI | GTGCAG | 2 cut(s) | 267, 540 |
| BshFI | GGCC | 2 cut(s) | 1174, 1200 |
| BshNI | GGYRCC | 1 cut(s) | 635 |
| BsiHKAI | GWGCWC | 1 cut(s) | 589 |
| BsiSI | CCGG | 4 cut(s) | 801, 926, 1171, 1247 |
| BslFI | GGGAC | 1 cut(s) | 978 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 360, 542, 678, 1186, 1253 |
| BsmAI | GTCTC | 1 cut(s) | 143 |
| BsmFI | GGGAC | 1 cut(s) | 978 |
| BsmI | GAATGC | 1 cut(s) | 1157 |
| BsnI | GGCC | 2 cut(s) | 1174, 1200 |
| Bso31I | GGTCTC | 1 cut(s) | 143 |
| Bsp1286I | GDGCHC | 3 cut(s) | 589, 640, 1369 |
| Bsp143I | GATC | 4 cut(s) | 367, 736, 1090, 1275 |
| Bsp19I | CCATGG | 2 cut(s) | 50, 103 |
| BspACI | CCGC | 2 cut(s) | 393, 1284 |
| BspANI | GGCC | 2 cut(s) | 1174, 1200 |
| BspCNI | CTCAG | 3 cut(s) | 73, 456, 469 |
| BspHI | TCATGA | 1 cut(s) | 523 |
| BspLI | GGNNCC | 4 cut(s) | 547, 637, 750, 1168 |
| BspMAI | CTGCAG | 4 cut(s) | 164, 628, 1156, 1283 |
| BspPI | GGATC | 2 cut(s) | 362, 1283 |
| BspT107I | GGYRCC | 1 cut(s) | 635 |
| BspTNI | GGTCTC | 1 cut(s) | 143 |
| BsrI | ACTGG | 4 cut(s) | 329, 759, 868, 1103 |
| BssECI | CCNNGG | 5 cut(s) | 50, 103, 1162, 1229, 1247 |
| BssMI | GATC | 4 cut(s) | 367, 736, 1090, 1275 |
| BssSI | CACGAG | 1 cut(s) | 588 |
| BssT1I | CCWWGG | 2 cut(s) | 50, 103 |
| Bst2BI | CACGAG | 1 cut(s) | 588 |
| Bst2UI | CCWGG | 2 cut(s) | 33, 1164 |
| Bst4CI | ACNGT | 7 cut(s) | 288, 504, 606, 632, 821, 828, 910 |
| Bst6I | CTCTTC | 1 cut(s) | 338 |
| BstC8I | GCNNGC | 6 cut(s) | 113, 164, 555, 722, 923, 1071 |
| BstDEI | CTNAG | 5 cut(s) | 60, 167, 443, 456, 1115 |
| BstDSI | CCRYGG | 3 cut(s) | 50, 103, 1229 |
| BstF5I | GGATG | 2 cut(s) | 396, 1240 |
| BstH2I | RGCGCY | 1 cut(s) | 1244 |
| BstHHI | GCGC | 1 cut(s) | 1243 |
| BstKTI | GATC | 4 cut(s) | 370, 739, 1093, 1278 |
| BstMAI | GTCTC | 1 cut(s) | 143 |
| BstMBI | GATC | 4 cut(s) | 367, 736, 1090, 1275 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 401, 1249 |
| BstNI | CCWGG | 2 cut(s) | 33, 1164 |
| BstNSI | RCATGY | 2 cut(s) | 101, 986 |
| BstSCI | CCNGG | 5 cut(s) | 31, 925, 1162, 1169, 1246 |
| BstSFI | CTRYAG | 5 cut(s) | 160, 624, 842, 1152, 1279 |
| BstSLI | GKGCMC | 1 cut(s) | 640 |
| BstV1I | GCAGC | 7 cut(s) | 146, 268, 610, 1060, 1166, 1230, 1293 |
| BstV2I | GAAGAC | 2 cut(s) | 231, 1198 |
| BstX2I | RGATCY | 1 cut(s) | 1275 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 134, 149, 647 |
| BstYI | RGATCY | 1 cut(s) | 1275 |
| Bsu36I | CCTNAGG | 1 cut(s) | 60 |
| BsuI | GTATCC | 1 cut(s) | 874 |
| BsuRI | GGCC | 2 cut(s) | 1174, 1200 |
| BtgI | CCRYGG | 3 cut(s) | 50, 103, 1229 |
| BtsCI | GGATG | 2 cut(s) | 396, 1240 |
| BtsIMutI | CAGTG | 2 cut(s) | 464, 637 |
| Cac8I | GCNNGC | 6 cut(s) | 113, 164, 555, 722, 923, 1071 |
| CciI | TCATGA | 1 cut(s) | 523 |
| CfoI | GCGC | 1 cut(s) | 1243 |
| Cfr13I | GGNCC | 3 cut(s) | 47, 270, 545 |
| Csp6I | GTAC | 3 cut(s) | 663, 762, 804 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 658, 693 |
| CviAII | CATG | 7 cut(s) | 51, 98, 104, 248, 524, 574, 983 |
| CviQI | GTAC | 3 cut(s) | 663, 762, 804 |
| DdeI | CTNAG | 5 cut(s) | 60, 167, 443, 456, 1115 |
| DpnI | GATC | 4 cut(s) | 369, 738, 1092, 1277 |
| DpnII | GATC | 4 cut(s) | 367, 736, 1090, 1275 |
| EaeI | YGGCCR | 1 cut(s) | 1172 |
| Eam1104I | CTCTTC | 1 cut(s) | 338 |
| EarI | CTCTTC | 1 cut(s) | 338 |
| Eco130I | CCWWGG | 2 cut(s) | 50, 103 |
| Eco24I | GRGCYC | 1 cut(s) | 1369 |
| Eco31I | GGTCTC | 1 cut(s) | 143 |
| Eco47I | GGWCC | 3 cut(s) | 47, 270, 545 |
| Eco57I | CTGAAG | 1 cut(s) | 1107 |
| Eco81I | CCTNAGG | 1 cut(s) | 60 |
| EcoRII | CCWGG | 2 cut(s) | 31, 1162 |
| EcoT14I | CCWWGG | 2 cut(s) | 50, 103 |
| EcoT38I | GRGCYC | 1 cut(s) | 1369 |
| ErhI | CCWWGG | 2 cut(s) | 50, 103 |
| FaeI | CATG | 7 cut(s) | 54, 101, 107, 251, 527, 577, 986 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 62, 94 |
| FaqI | GGGAC | 1 cut(s) | 978 |
| FatI | CATG | 7 cut(s) | 50, 97, 103, 247, 523, 573, 982 |
| FbaI | TGATCA | 1 cut(s) | 736 |
| Fnu4HI | GCNGC | 8 cut(s) | 160, 282, 624, 1074, 1155, 1244, 1282, 1285 |
| FokI | GGATG | 2 cut(s) | 383, 1247 |
| FriOI | GRGCYC | 1 cut(s) | 1369 |
| Fsp4HI | GCNGC | 8 cut(s) | 160, 282, 624, 1074, 1155, 1244, 1282, 1285 |
| FspBI | CTAG | 3 cut(s) | 489, 537, 1064 |
| GlaI | GCGC | 1 cut(s) | 1242 |
| GluI | GCNGC | 8 cut(s) | 160, 282, 624, 1074, 1155, 1244, 1282, 1285 |
| GsaI | CCCAGC | 1 cut(s) | 1366 |
| GsuI | CTGGAG | 2 cut(s) | 481, 1050 |
| HaeII | RGCGCY | 1 cut(s) | 1244 |
| HaeIII | GGCC | 2 cut(s) | 1174, 1200 |
| HapII | CCGG | 4 cut(s) | 801, 926, 1171, 1247 |
| HhaI | GCGC | 1 cut(s) | 1243 |
| Hin1II | CATG | 7 cut(s) | 54, 101, 107, 251, 527, 577, 986 |
| Hin6I | GCGC | 1 cut(s) | 1241 |
| HinP1I | GCGC | 1 cut(s) | 1241 |
| HindIII | AAGCTT | 1 cut(s) | 1036 |
| HinfI | GANTC | 6 cut(s) | 55, 492, 797, 956, 1082, 1375 |
| HpaII | CCGG | 4 cut(s) | 801, 926, 1171, 1247 |
| HphI | GGTGA | 1 cut(s) | 833 |
| Hpy166II | GTNNAC | 3 cut(s) | 273, 824, 1217 |
| Hpy188I | TCNGA | 2 cut(s) | 1087, 1385 |
| Hpy188III | TCNNGA | 5 cut(s) | 62, 498, 524, 1125, 1138 |
| Hpy8I | GTNNAC | 3 cut(s) | 273, 824, 1217 |
| Hpy99I | CGWCG | 1 cut(s) | 1214 |
| HpyAV | CCTTC | 3 cut(s) | 1064, 1109, 1348 |
| HpyCH4III | ACNGT | 7 cut(s) | 288, 504, 606, 632, 821, 828, 910 |
| HpyCH4IV | ACGT | 3 cut(s) | 675, 901, 1132 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 401, 1249 |
| HpyF3I | CTNAG | 5 cut(s) | 60, 167, 443, 456, 1115 |
| HpySE526I | ACGT | 3 cut(s) | 675, 901, 1132 |
| Hsp92II | CATG | 7 cut(s) | 54, 101, 107, 251, 527, 577, 986 |
| HspAI | GCGC | 1 cut(s) | 1241 |
| Ksp22I | TGATCA | 1 cut(s) | 736 |
| Kzo9I | GATC | 4 cut(s) | 367, 736, 1090, 1275 |
| LmnI | GCTCC | 2 cut(s) | 754, 1172 |
| Lsp1109I | GCAGC | 7 cut(s) | 146, 268, 610, 1060, 1166, 1230, 1293 |
| LweI | GCATC | 1 cut(s) | 35 |
| MaeI | CTAG | 3 cut(s) | 489, 537, 1064 |
| MaeII | ACGT | 3 cut(s) | 675, 901, 1132 |
| MaeIII | GTNAC | 2 cut(s) | 288, 373 |
| MalI | GATC | 4 cut(s) | 369, 738, 1092, 1277 |
| MboI | GATC | 4 cut(s) | 367, 736, 1090, 1275 |
| MboII | GAAGA | 5 cut(s) | 236, 355, 439, 1100, 1198 |
| MflI | RGATCY | 1 cut(s) | 1275 |
| MhlI | GDGCHC | 3 cut(s) | 589, 640, 1369 |
| MluCI | AATT | 6 cut(s) | 208, 594, 641, 730, 1002, 1316 |
| MlyI | GAGTC | 4 cut(s) | 49, 806, 965, 1384 |
| MmeI | TCCRAC | 1 cut(s) | 810 |
| MseI | TTAA | 2 cut(s) | 198, 608 |
| MslI | CAYNNNNRTG | 2 cut(s) | 102, 562 |
| MspA1I | CMGCKG | 1 cut(s) | 1284 |
| MspI | CCGG | 4 cut(s) | 801, 926, 1171, 1247 |
| MspR9I | CCNGG | 5 cut(s) | 33, 927, 1164, 1171, 1248 |
| Mva1269I | GAATGC | 1 cut(s) | 1157 |
| MvaI | CCWGG | 2 cut(s) | 33, 1164 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 401, 1249 |
| NciI | CCSGG | 3 cut(s) | 927, 1171, 1248 |
| NcoI | CCATGG | 2 cut(s) | 50, 103 |
| NdeII | GATC | 4 cut(s) | 367, 736, 1090, 1275 |
| NlaIII | CATG | 7 cut(s) | 54, 101, 107, 251, 527, 577, 986 |
| NlaIV | GGNNCC | 4 cut(s) | 547, 637, 750, 1168 |
| NmeAIII | GCCGAG | 1 cut(s) | 451 |
| NspI | RCATGY | 2 cut(s) | 101, 986 |
| PagI | TCATGA | 1 cut(s) | 523 |
| PciI | ACATGT | 1 cut(s) | 97 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 595 |
| PctI | GAATGC | 1 cut(s) | 1157 |
| PfeI | GAWTC | 2 cut(s) | 492, 1082 |
| PfoI | TCCNGGA | 1 cut(s) | 31 |
| PkrI | GCNGC | 8 cut(s) | 161, 283, 625, 1075, 1156, 1245, 1283, 1286 |
| PleI | GAGTC | 4 cut(s) | 49, 805, 964, 1383 |
| PpsI | GAGTC | 4 cut(s) | 49, 805, 964, 1383 |
| PscI | ACATGT | 1 cut(s) | 97 |
| Psp6I | CCWGG | 2 cut(s) | 31, 1162 |
| PspFI | CCCAGC | 1 cut(s) | 1362 |
| PspGI | CCWGG | 2 cut(s) | 31, 1162 |
| PspN4I | GGNNCC | 4 cut(s) | 547, 637, 750, 1168 |
| PspPI | GGNCC | 3 cut(s) | 47, 270, 545 |
| PstI | CTGCAG | 4 cut(s) | 164, 628, 1156, 1283 |
| PsuI | RGATCY | 1 cut(s) | 1275 |
| RsaI | GTAC | 3 cut(s) | 664, 763, 805 |
| RsaNI | GTAC | 3 cut(s) | 663, 762, 804 |
| RseI | CAYNNNNRTG | 2 cut(s) | 102, 562 |
| SaqAI | TTAA | 2 cut(s) | 198, 608 |
| SatI | GCNGC | 8 cut(s) | 160, 282, 624, 1074, 1155, 1244, 1282, 1285 |
| Sau3AI | GATC | 4 cut(s) | 367, 736, 1090, 1275 |
| Sau96I | GGNCC | 3 cut(s) | 47, 270, 545 |
| SchI | GAGTC | 4 cut(s) | 49, 806, 965, 1384 |
| ScrFI | CCNGG | 5 cut(s) | 33, 927, 1164, 1171, 1248 |
| SduI | GDGCHC | 3 cut(s) | 589, 640, 1369 |
| SfaNI | GCATC | 1 cut(s) | 35 |
| SfcI | CTRYAG | 5 cut(s) | 160, 624, 842, 1152, 1279 |
| SinI | GGWCC | 3 cut(s) | 47, 270, 545 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 102, 562 |
| Sse9I | AATT | 6 cut(s) | 208, 594, 641, 730, 1002, 1316 |
| SsiI | CCGC | 2 cut(s) | 393, 1284 |
| SspI | AATATT | 1 cut(s) | 618 |
| SspMI | CTAG | 3 cut(s) | 489, 537, 1064 |
| StyD4I | CCNGG | 5 cut(s) | 31, 925, 1162, 1169, 1246 |
| StyI | CCWWGG | 2 cut(s) | 50, 103 |
| TaaI | ACNGT | 7 cut(s) | 288, 504, 606, 632, 821, 828, 910 |
| TaiI | ACGT | 3 cut(s) | 678, 904, 1135 |
| TaqI | TCGA | 2 cut(s) | 598, 1337 |
| TasI | AATT | 6 cut(s) | 208, 594, 641, 730, 1002, 1316 |
| TatI | WGTACW | 2 cut(s) | 662, 761 |
| TauI | GCSGC | 1 cut(s) | 1287 |
| TfiI | GAWTC | 2 cut(s) | 492, 1082 |
| Tru1I | TTAA | 2 cut(s) | 198, 608 |
| Tru9I | TTAA | 2 cut(s) | 198, 608 |
| TscAI | CASTG | 2 cut(s) | 464, 637 |
| TseI | GCWGC | 7 cut(s) | 159, 281, 623, 1073, 1154, 1243, 1281 |
| TspDTI | ATGAA | 6 cut(s) | 236, 590, 594, 684, 798, 993 |
| TspRI | CASTG | 2 cut(s) | 464, 637 |
| VpaK11BI | GGWCC | 3 cut(s) | 47, 270, 545 |
| XapI | RAATTY | 2 cut(s) | 208, 594 |
| XceI | RCATGY | 2 cut(s) | 101, 986 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 647, 860 |
| XspI | CTAG | 3 cut(s) | 489, 537, 1064 |