Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Forward (+)

3133807 .. 3135572

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G003840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGGAAGTCCCGAACGTTAACTAACAGCACTGCTACGACTTCGGAGATAAAAAGAGGGCCATGGACTCCTCAAGAGGACAAGAAGCTCTTTGCTTTCATTCAACAACATGGCCATGGAAGCTGGCGGTCCTTGCCCGAGAAAGCTGGTTTACAAAGATGTGGGAAGAGCTGCAGGTTAAGATGGAGAAACTACCTAAACCCTGCTATTAAGAGAGGAAATTTCAGTTTGCAGGAAGACCAGACCATCATTCAGCTTCATGCACTTCTCGGCAACAGGTGGTCAGCCATAGCTGCGAACTTACCAAGGAGAACAGACAATGAGATAAAGAACTACTGGAACACACATCTAAAGAAGAGGTTAGCCAAGATAGGGTTTGATCCTGTAACCCACAGGCCCAAGACCGCCATCCTTGCCTCTGCTAGTGGCGACCCGAAGAACCTCTCAAACCTCAGCCACATAGCTCAGTGGGAAAGTGCTAGGCTTCAAGCAGAAGCTAGATTTGTGAGACAGTCAAAACTACTCAAACCAGCACCACAGTGCCTTGACTTCAATTTAAGAACATGGGAAACCCTAATGATGTCAAAGTCATTTGCTGCAGGCGGTGGAGGTGGCGACGAAGCCGGTGGTGTTGGTCGTGCAACTAATGTTGTTCAAGAGGTTGGTTCATTCGGTAATTTTGACGGTGTACTTGGTAATAACGGTGGACAGTTTGAGGCTCCAAAATTAACCAAATCAGCAGCTCCGGATTTCAAGGGAGTTTCAGAGGAGAGTGGTACTGATGAATACGGTGACCTATTTGAGACACTACTACCCCAGGAGAGCTTCAATAATACCGGGTTTGATGTCGTGGATGCTTGGACTTTGGAACAATGTAATGATATCAGTGCAGACTATCAAAATGTGATCATGAGCGGGGGGTTGAAAAACGTTAACCCATATATGTTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

317

Amino Acids

35.08

Weight (kDa)

9.1

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	19 - 66	9.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	22 - 82	1.8e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	72 - 117	2.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	75 - 127	2.9e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	165
AccBSI	CCGCTC	1 cut(s)	915
AccIII	TCCGGA	1 cut(s)	745
AciI	CCGC	4 cut(s)	127, 405, 603, 915
AclI	AACGTT	2 cut(s)	17, 930
AclWI	GGATC	1 cut(s)	374
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	220
AfaI	GTAC	2 cut(s)	690, 778
AfiI	CCNNNNNNNGG	1 cut(s)	372
AgsI	TTSAA	7 cut(s)	104, 488, 553, 656, 754, 829, 925
AjnI	CCWGG	1 cut(s)	816
AleI	CACNNNNGTG	1 cut(s)	538
Alw26I	GTCTC	2 cut(s)	502, 797
AlwI	GGATC	1 cut(s)	374
Ama87I	CYCGRG	1 cut(s)	137
Aor13HI	TCCGGA	1 cut(s)	745
AoxI	GGCC	3 cut(s)	59, 112, 395
ApeKI	GCWGC	4 cut(s)	171, 293, 596, 740
ApoI	RAATTY	1 cut(s)	220
AspS9I	GGNCC	3 cut(s)	59, 129, 396
AsuC2I	CCSGG	1 cut(s)	838
AsuHPI	GGTGA	1 cut(s)	803
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	243
BbvCI	CCTCAGC	1 cut(s)	452
BbvI	GCAGC	4 cut(s)	158, 280, 583, 752
BccI	CCATC	3 cut(s)	177, 254, 416
BciT130I	CCWGG	1 cut(s)	818
BclI	TGATCA	1 cut(s)	906
BcnI	CCSGG	1 cut(s)	838
BcoDI	GTCTC	2 cut(s)	502, 797
BfaI	CTAG	3 cut(s)	423, 480, 498
BfmI	CTRYAG	2 cut(s)	172, 597
BfuAI	ACCTGC	1 cut(s)	165
BisI	GCNGC	4 cut(s)	172, 294, 597, 741
BlsI	GCNGC	4 cut(s)	173, 295, 598, 742
Bme1390I	CCNGG	2 cut(s)	818, 838
Bme18I	GGWCC	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	3 cut(s)	59, 129, 396
BmiI	GGNNCC	1 cut(s)	720
BmrFI	CCNGG	2 cut(s)	818, 838
BmsI	GCATC	1 cut(s)	844
BpiI	GAAGAC	1 cut(s)	243
Bpu10I	CCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	838
BsaJI	CCNNGG	4 cut(s)	62, 115, 305, 816
BsaWI	WCCGGW	1 cut(s)	745
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	2 cut(s)	341, 949
BseAI	TCCGGA	1 cut(s)	745
BseBI	CCWGG	1 cut(s)	818
BseDI	CCNNGG	4 cut(s)	62, 115, 305, 816
BseGI	GGATG	2 cut(s)	408, 859
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseMII	CTCAG	2 cut(s)	466, 479
BseNI	ACTGG	2 cut(s)	341, 949
BseRI	GAGGAG	2 cut(s)	60, 782
BseXI	GCAGC	4 cut(s)	158, 280, 583, 752
BsgI	GTGCAG	1 cut(s)	909
BshFI	GGCC	3 cut(s)	61, 114, 397
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	3 cut(s)	624, 746, 837
BslI	CCNNNNNNNGG	1 cut(s)	372
BsmAI	GTCTC	2 cut(s)	502, 797
BsnI	GGCC	3 cut(s)	61, 114, 397
BsoBI	CYCGRG	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	745
Bsp143I	GATC	2 cut(s)	379, 906
Bsp19I	CCATGG	2 cut(s)	62, 115
BspACI	CCGC	4 cut(s)	127, 405, 603, 915
BspANI	GGCC	3 cut(s)	61, 114, 397
BspCNI	CTCAG	2 cut(s)	465, 478
BspEI	TCCGGA	1 cut(s)	745
BspHI	TCATGA	1 cut(s)	909
BspLI	GGNNCC	1 cut(s)	720
BspMAI	CTGCAG	2 cut(s)	176, 601
BspMI	ACCTGC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	374
BspQI	GCTCTTC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	915
BsrFI	RCCGGY	1 cut(s)	623
BsrI	ACTGG	2 cut(s)	341, 949
BssAI	RCCGGY	1 cut(s)	623
BssECI	CCNNGG	4 cut(s)	62, 115, 305, 816
BssMI	GATC	2 cut(s)	379, 906
BssT1I	CCWWGG	3 cut(s)	62, 115, 305
Bst2UI	CCWGG	1 cut(s)	818
Bst4CI	ACNGT	6 cut(s)	513, 540, 686, 704, 711, 791
Bst6I	CTCTTC	2 cut(s)	161, 350
BstC8I	GCNNGC	2 cut(s)	125, 601
BstDEI	CTNAG	2 cut(s)	452, 465
BstDSI	CCRYGG	2 cut(s)	62, 115
BstEII	GGTNACC	1 cut(s)	791
BstF5I	GGATG	2 cut(s)	408, 859
BstKTI	GATC	2 cut(s)	382, 909
BstMAI	GTCTC	2 cut(s)	502, 797
BstMBI	GATC	2 cut(s)	379, 906
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 133, 293, 413
BstNI	CCWGG	1 cut(s)	818
BstPI	GGTNACC	1 cut(s)	791
BstSCI	CCNGG	2 cut(s)	816, 836
BstSFI	CTRYAG	2 cut(s)	172, 597
BstV1I	GCAGC	4 cut(s)	158, 280, 583, 752
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	61, 114, 397
BtgI	CCRYGG	2 cut(s)	62, 115
BtsCI	GGATG	2 cut(s)	408, 859
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	4 cut(s)	30, 473, 545, 892
BveI	ACCTGC	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	125, 601
CciI	TCATGA	1 cut(s)	909
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	3 cut(s)	59, 129, 396
Csp6I	GTAC	2 cut(s)	689, 777
CviAII	CATG	6 cut(s)	63, 110, 116, 260, 564, 910
CviQI	GTAC	2 cut(s)	689, 777
DdeI	CTNAG	2 cut(s)	452, 465
DpnI	GATC	2 cut(s)	381, 908
DpnII	GATC	2 cut(s)	379, 906
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	161, 350
EarI	CTCTTC	2 cut(s)	161, 350
Eco130I	CCWWGG	3 cut(s)	62, 115, 305
Eco32I	GATATC	1 cut(s)	883
Eco47I	GGWCC	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	791
EcoO65I	GGTNACC	1 cut(s)	791
EcoRII	CCWGG	1 cut(s)	816
EcoRV	GATATC	1 cut(s)	883
EcoT14I	CCWWGG	3 cut(s)	62, 115, 305
ErhI	CCWWGG	3 cut(s)	62, 115, 305
FaeI	CATG	6 cut(s)	66, 113, 119, 263, 567, 913
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	6 cut(s)	62, 109, 115, 259, 563, 909
FauI	CCCGC	1 cut(s)	908
FbaI	TGATCA	1 cut(s)	906
Fnu4HI	GCNGC	4 cut(s)	172, 294, 597, 741
FokI	GGATG	2 cut(s)	395, 866
Fsp4HI	GCNGC	4 cut(s)	172, 294, 597, 741
FspBI	CTAG	3 cut(s)	423, 480, 498
GluI	GCNGC	4 cut(s)	172, 294, 597, 741
HaeIII	GGCC	3 cut(s)	61, 114, 397
HapII	CCGG	3 cut(s)	624, 746, 837
Hin1II	CATG	6 cut(s)	66, 113, 119, 263, 567, 913
HincII	GTYRAC	2 cut(s)	21, 934
HindII	GTYRAC	2 cut(s)	21, 934
HinfI	GANTC	1 cut(s)	67
HpaI	GTTAAC	2 cut(s)	21, 934
HpaII	CCGG	3 cut(s)	624, 746, 837
HphI	GGTGA	1 cut(s)	803
Hpy166II	GTNNAC	5 cut(s)	21, 152, 689, 707, 934
Hpy188I	TCNGA	2 cut(s)	46, 766
Hpy188III	TCNNGA	5 cut(s)	12, 74, 656, 746, 910
Hpy8I	GTNNAC	5 cut(s)	21, 152, 689, 707, 934
Hpy99I	CGWCG	1 cut(s)	620
HpyCH4III	ACNGT	6 cut(s)	513, 540, 686, 704, 711, 791
HpyCH4IV	ACGT	2 cut(s)	17, 930
HpyCH4V	TGCA	6 cut(s)	174, 232, 263, 599, 641, 890
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 133, 293, 413
HpyF3I	CTNAG	2 cut(s)	452, 465
HpySE526I	ACGT	2 cut(s)	17, 930
Hsp92II	CATG	6 cut(s)	66, 113, 119, 263, 567, 913
Kpn2I	TCCGGA	1 cut(s)	745
Ksp22I	TGATCA	1 cut(s)	906
KspAI	GTTAAC	2 cut(s)	21, 934
Kzo9I	GATC	2 cut(s)	379, 906
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	2 cut(s)	724, 748
Lsp1109I	GCAGC	4 cut(s)	158, 280, 583, 752
LweI	GCATC	1 cut(s)	844
MaeI	CTAG	3 cut(s)	423, 480, 498
MaeII	ACGT	2 cut(s)	17, 930
MaeIII	GTNAC	2 cut(s)	385, 791
MalI	GATC	2 cut(s)	381, 908
MbiI	CCGCTC	1 cut(s)	915
MboI	GATC	2 cut(s)	379, 906
MboII	GAAGA	4 cut(s)	178, 248, 367, 448
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	4 cut(s)	220, 553, 676, 725
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	61
Mox20I	TGGCCA	1 cut(s)	114
MroI	TCCGGA	1 cut(s)	745
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	6 cut(s)	20, 179, 210, 557, 728, 933
MslI	CAYNNNNRTG	2 cut(s)	114, 538
Msp20I	TGGCCA	1 cut(s)	114
MspI	CCGG	3 cut(s)	624, 746, 837
MspR9I	CCNGG	2 cut(s)	818, 838
MvaI	CCWGG	1 cut(s)	818
MwoI	GCNNNNNNNGC	4 cut(s)	120, 133, 293, 413
NciI	CCSGG	1 cut(s)	838
NcoI	CCATGG	2 cut(s)	62, 115
NdeII	GATC	2 cut(s)	379, 906
NlaIII	CATG	6 cut(s)	66, 113, 119, 263, 567, 913
NlaIV	GGNNCC	1 cut(s)	720
NmeAIII	GCCGAG	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	791
OliI	CACNNNNGTG	1 cut(s)	538
PagI	TCATGA	1 cut(s)	909
PciSI	GCTCTTC	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	173, 295, 598, 742
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp1406I	AACGTT	2 cut(s)	17, 930
Psp6I	CCWGG	1 cut(s)	816
PspEI	GGTNACC	1 cut(s)	791
PspGI	CCWGG	1 cut(s)	816
PspN4I	GGNNCC	1 cut(s)	720
PspPI	GGNCC	3 cut(s)	59, 129, 396
PstI	CTGCAG	2 cut(s)	176, 601
RsaI	GTAC	2 cut(s)	690, 778
RsaNI	GTAC	2 cut(s)	689, 777
RseI	CAYNNNNRTG	2 cut(s)	114, 538
SapI	GCTCTTC	1 cut(s)	161
SaqAI	TTAA	6 cut(s)	20, 179, 210, 557, 728, 933
SatI	GCNGC	4 cut(s)	172, 294, 597, 741
Sau3AI	GATC	2 cut(s)	379, 906
Sau96I	GGNCC	3 cut(s)	59, 129, 396
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	2 cut(s)	818, 838
SfaNI	GCATC	1 cut(s)	844
SfcI	CTRYAG	2 cut(s)	172, 597
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	2 cut(s)	114, 538
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	4 cut(s)	220, 553, 676, 725
SsiI	CCGC	4 cut(s)	127, 405, 603, 915
SspMI	CTAG	3 cut(s)	423, 480, 498
StyD4I	CCNGG	2 cut(s)	816, 836
StyI	CCWWGG	3 cut(s)	62, 115, 305
TaaI	ACNGT	6 cut(s)	513, 540, 686, 704, 711, 791
TaiI	ACGT	2 cut(s)	20, 933
TasI	AATT	4 cut(s)	220, 553, 676, 725
TatI	WGTACW	1 cut(s)	688
Tru1I	TTAA	6 cut(s)	20, 179, 210, 557, 728, 933
Tru9I	TTAA	6 cut(s)	20, 179, 210, 557, 728, 933
TscAI	CASTG	4 cut(s)	37, 473, 545, 892
TseFI	GTSAC	1 cut(s)	791
TseI	GCWGC	4 cut(s)	171, 293, 596, 740
Tsp45I	GTSAC	1 cut(s)	791
TspDTI	ATGAA	4 cut(s)	88, 248, 657, 798
TspRI	CASTG	4 cut(s)	37, 473, 545, 892
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	1 cut(s)	220
XspI	CTAG	3 cut(s)	423, 480, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.