Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Forward (+)

31204283 .. 31206257

Gene Structure 1975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG297800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGAAGGCAATCTAATAGTACTGTTGCATCTCCTGGAATAAGGAGAGGTCCATGGACTCCTCAGGAGGACAAGAAGCTCTTTGCTTTCGTTCAACAACATGGCCATGGAAGCTGGCGTTCCTTACCCCAGAAAGCTGGTCTCCAAAGATGTGGAAAGAGCTGCAGGCTAAGATGGAGAAACTATCTAAACCCTGATATTAAGAGAGGAAATTTCAGTTTGCAGGAAGACCAGACCATCATTCTACTTCATGCACTTTTGGGCAACAGGTGGTCGACCATAGCTGCACAGTTACCAAAGAGAACAGACAATGAGATAAAGAACTACTGGAACACACATCTAAAGAAGAGGTTAGCCAAGATAGGGTTTGATCCTGTAACCCACAAGCCCAAGACCGCCATCCTCGCCTCTGCTGATGGTGGCGACCCGAAGAACCTCTCAAACCTCAGCCACATAGCTCAGTGGGAAACTGCTCGGCTTCAAGCAGAAGCTAGATTCTCCGGACAGTCAAAACTACTCATCAGTCATGACCAACCTCCTAGATTTGGACCCGTGCCTGTACCACAATGCCTTGACATGAATGAAAGAGCACGAGAAATTCGATTACTGTTAAAGTCAATATTAGCTGCAGACAGTGGTGCCCAATTAGGTGGTGGTATTGGTACTACAGCCACCCACGTTGGGCAGGAGGTTGGTTCATTTGGTAAAGTTGATGTTGAGGGCTTGCTTACTAATTGTGATCAGTTTGAGGCTCCAAGAACCAGTACATCAGTTCTAGGTTTTGATGAAGTTTTTGGGGAGTCCGGTACTAGTAATGACTACGGTGAACTGTTGGAGGCATTACTACAGCACAACCATAACAATACTGGATTTGAAGTTGGGGATGCTTGGAGTTTGGAACAACGTGAAACAGTAATGATGAGCGAGCCGGGAACAACGTACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

315

Amino Acids

34.85

Weight (kDa)

8.64

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 63	3.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 79	2.2e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 114	1.7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 124	1.7e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	638
AccI	GTMKAC	1 cut(s)	275
AccIII	TCCGGA	1 cut(s)	500
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	2 cut(s)	211, 597
AfaI	GTAC	6 cut(s)	22, 561, 664, 766, 808, 941
AfiI	CCNNNNNNNGG	3 cut(s)	363, 545, 681
AgsI	TTSAA	3 cut(s)	95, 482, 875
AhlI	ACTAGT	1 cut(s)	809
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	8 cut(s)	79, 114, 137, 162, 284, 458, 491, 626
AluI	AGCT	8 cut(s)	79, 114, 137, 162, 284, 458, 491, 626
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	365
Aor13HI	TCCGGA	1 cut(s)	500
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	3 cut(s)	162, 284, 626
ApoI	RAATTY	2 cut(s)	211, 597
AspS9I	GGNCC	2 cut(s)	50, 548
AsuC2I	CCSGG	1 cut(s)	930
AsuHPI	GGTGA	1 cut(s)	836
AvaII	GGWCC	2 cut(s)	50, 548
AxyI	CCTNAGG	1 cut(s)	63
BaeGI	GKGCMC	1 cut(s)	643
BalI	TGGCCA	1 cut(s)	105
BanI	GGYRCC	1 cut(s)	638
BauI	CACGAG	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	592
BbvCI	CCTCAGC	1 cut(s)	446
BbvI	GCAGC	3 cut(s)	149, 271, 613
BccI	CCATC	4 cut(s)	168, 245, 407, 410
BciT130I	CCWGG	1 cut(s)	36
BclI	TGATCA	1 cut(s)	739
BcnI	CCSGG	1 cut(s)	930
BcoDI	GTCTC	1 cut(s)	146
BcuI	ACTAGT	1 cut(s)	809
BfaI	CTAG	4 cut(s)	492, 540, 776, 810
BfmI	CTRYAG	4 cut(s)	163, 627, 666, 845
BisI	GCNGC	3 cut(s)	163, 285, 627
BlsI	GCNGC	3 cut(s)	164, 286, 628
BmcAI	AGTACT	1 cut(s)	22
Bme1390I	CCNGG	2 cut(s)	36, 930
Bme18I	GGWCC	2 cut(s)	50, 548
BmgT120I	GGNCC	2 cut(s)	50, 548
BmiI	GGNNCC	3 cut(s)	550, 640, 753
BmrFI	CCNGG	2 cut(s)	36, 930
BmsI	GCATC	2 cut(s)	38, 874
BpiI	GAAGAC	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	446
BpuMI	CCSGG	1 cut(s)	930
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	53, 106
BsaWI	WCCGGW	2 cut(s)	500, 803
Bsc4I	CCNNNNNNNGG	3 cut(s)	363, 545, 681
Bse1I	ACTGG	3 cut(s)	332, 762, 871
Bse21I	CCTNAGG	1 cut(s)	63
BseAI	TCCGGA	1 cut(s)	500
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	53, 106
BseGI	GGATG	2 cut(s)	399, 889
BseLI	CCNNNNNNNGG	3 cut(s)	363, 545, 681
BseMII	CTCAG	3 cut(s)	77, 460, 473
BseNI	ACTGG	3 cut(s)	332, 762, 871
BseRI	GAGGAG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	643
BseXI	GCAGC	3 cut(s)	149, 271, 613
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	638
BsiHKAI	GWGCWC	1 cut(s)	592
BsiSI	CCGG	3 cut(s)	501, 804, 929
BslI	CCNNNNNNNGG	3 cut(s)	363, 545, 681
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	105
Bso31I	GGTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	592, 643
Bsp13I	TCCGGA	1 cut(s)	500
Bsp143I	GATC	2 cut(s)	370, 739
Bsp19I	CCATGG	2 cut(s)	53, 106
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	3 cut(s)	76, 459, 472
BspEI	TCCGGA	1 cut(s)	500
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	3 cut(s)	550, 640, 753
BspMAI	CTGCAG	2 cut(s)	167, 631
BspPI	GGATC	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	638
BspTNI	GGTCTC	1 cut(s)	146
BsrI	ACTGG	3 cut(s)	332, 762, 871
BssECI	CCNNGG	2 cut(s)	53, 106
BssMI	GATC	2 cut(s)	370, 739
BssSI	CACGAG	1 cut(s)	591
BssT1I	CCWWGG	2 cut(s)	53, 106
Bst2BI	CACGAG	1 cut(s)	591
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	8 cut(s)	25, 291, 507, 609, 635, 824, 831, 913
Bst6I	CTCTTC	1 cut(s)	341
BstC8I	GCNNGC	4 cut(s)	116, 167, 725, 926
BstDEI	CTNAG	4 cut(s)	63, 170, 446, 459
BstDSI	CCRYGG	2 cut(s)	53, 106
BstF5I	GGATG	2 cut(s)	399, 889
BstKTI	GATC	2 cut(s)	373, 742
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	370, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 404
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	2 cut(s)	34, 928
BstSFI	CTRYAG	4 cut(s)	163, 627, 666, 845
BstSLI	GKGCMC	1 cut(s)	643
BstV1I	GCAGC	3 cut(s)	149, 271, 613
BstV2I	GAAGAC	1 cut(s)	234
BstXI	CCANNNNNNTGG	3 cut(s)	137, 152, 650
Bsu36I	CCTNAGG	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	105
BtgI	CCRYGG	2 cut(s)	53, 106
BtsCI	GGATG	2 cut(s)	399, 889
BtsIMutI	CAGTG	2 cut(s)	467, 640
Cac8I	GCNNGC	4 cut(s)	116, 167, 725, 926
CciI	TCATGA	1 cut(s)	526
Cfr13I	GGNCC	2 cut(s)	50, 548
Csp6I	GTAC	6 cut(s)	21, 560, 663, 765, 807, 940
CspCI	CAANNNNNGTGG	2 cut(s)	661, 696
CviAII	CATG	6 cut(s)	54, 101, 107, 251, 527, 577
CviQI	GTAC	6 cut(s)	21, 560, 663, 765, 807, 940
DdeI	CTNAG	4 cut(s)	63, 170, 446, 459
DpnI	GATC	2 cut(s)	372, 741
DpnII	GATC	2 cut(s)	370, 739
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
Eco130I	CCWWGG	2 cut(s)	53, 106
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	2 cut(s)	50, 548
Eco81I	CCTNAGG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	53, 106
ErhI	CCWWGG	2 cut(s)	53, 106
FaeI	CATG	6 cut(s)	57, 104, 110, 254, 530, 580
FaiI	YATR	9 cut(s)	55, 102, 108, 252, 281, 455, 528, 578, 858
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	6 cut(s)	53, 100, 106, 250, 526, 576
FbaI	TGATCA	1 cut(s)	739
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	3 cut(s)	163, 285, 627
FokI	GGATG	2 cut(s)	386, 896
Fsp4HI	GCNGC	3 cut(s)	163, 285, 627
FspBI	CTAG	4 cut(s)	492, 540, 776, 810
GluI	GCNGC	3 cut(s)	163, 285, 627
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	3 cut(s)	501, 804, 929
Hin1II	CATG	6 cut(s)	57, 104, 110, 254, 530, 580
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HinfI	GANTC	3 cut(s)	58, 495, 800
HpaII	CCGG	3 cut(s)	501, 804, 929
HphI	GGTGA	1 cut(s)	836
Hpy166II	GTNNAC	2 cut(s)	276, 827
Hpy188III	TCNNGA	3 cut(s)	65, 501, 527
Hpy8I	GTNNAC	2 cut(s)	276, 827
HpyCH4III	ACNGT	8 cut(s)	25, 291, 507, 609, 635, 824, 831, 913
HpyCH4IV	ACGT	3 cut(s)	678, 904, 938
HpyCH4V	TGCA	6 cut(s)	29, 165, 223, 254, 287, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 404
HpyF3I	CTNAG	4 cut(s)	63, 170, 446, 459
HpySE526I	ACGT	3 cut(s)	678, 904, 938
Hsp92II	CATG	6 cut(s)	57, 104, 110, 254, 530, 580
Kpn2I	TCCGGA	1 cut(s)	500
Ksp22I	TGATCA	1 cut(s)	739
Kzo9I	GATC	2 cut(s)	370, 739
LmnI	GCTCC	1 cut(s)	757
Lsp1109I	GCAGC	3 cut(s)	149, 271, 613
LweI	GCATC	2 cut(s)	38, 874
MaeI	CTAG	4 cut(s)	492, 540, 776, 810
MaeII	ACGT	3 cut(s)	678, 904, 938
MaeIII	GTNAC	2 cut(s)	291, 376
MalI	GATC	2 cut(s)	372, 741
MboI	GATC	2 cut(s)	370, 739
MboII	GAAGA	3 cut(s)	239, 358, 442
MhlI	GDGCHC	2 cut(s)	592, 643
MlsI	TGGCCA	1 cut(s)	105
MluCI	AATT	4 cut(s)	211, 597, 644, 733
MluNI	TGGCCA	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	52, 809
MmeI	TCCRAC	1 cut(s)	813
Mox20I	TGGCCA	1 cut(s)	105
MroI	TCCGGA	1 cut(s)	500
MscI	TGGCCA	1 cut(s)	105
MseI	TTAA	2 cut(s)	201, 611
MslI	CAYNNNNRTG	1 cut(s)	105
Msp20I	TGGCCA	1 cut(s)	105
MspI	CCGG	3 cut(s)	501, 804, 929
MspR9I	CCNGG	2 cut(s)	36, 930
MvaI	CCWGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	111, 404
NciI	CCSGG	1 cut(s)	930
NcoI	CCATGG	2 cut(s)	53, 106
NdeII	GATC	2 cut(s)	370, 739
NlaIII	CATG	6 cut(s)	57, 104, 110, 254, 530, 580
NlaIV	GGNNCC	3 cut(s)	550, 640, 753
NmeAIII	GCCGAG	1 cut(s)	454
PagI	TCATGA	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	598
PfeI	GAWTC	1 cut(s)	495
PfoI	TCCNGGA	1 cut(s)	34
PkrI	GCNGC	3 cut(s)	164, 286, 628
PleI	GAGTC	2 cut(s)	52, 808
PpsI	GAGTC	2 cut(s)	52, 808
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	3 cut(s)	550, 640, 753
PspPI	GGNCC	2 cut(s)	50, 548
PstI	CTGCAG	2 cut(s)	167, 631
RsaI	GTAC	6 cut(s)	22, 561, 664, 766, 808, 941
RsaNI	GTAC	6 cut(s)	21, 560, 663, 765, 807, 940
RseI	CAYNNNNRTG	1 cut(s)	105
SalI	GTCGAC	1 cut(s)	274
SaqAI	TTAA	2 cut(s)	201, 611
SatI	GCNGC	3 cut(s)	163, 285, 627
Sau3AI	GATC	2 cut(s)	370, 739
Sau96I	GGNCC	2 cut(s)	50, 548
ScaI	AGTACT	1 cut(s)	22
SchI	GAGTC	2 cut(s)	52, 809
ScrFI	CCNGG	2 cut(s)	36, 930
SduI	GDGCHC	2 cut(s)	592, 643
SfaNI	GCATC	2 cut(s)	38, 874
SfcI	CTRYAG	4 cut(s)	163, 627, 666, 845
SinI	GGWCC	2 cut(s)	50, 548
SmiMI	CAYNNNNRTG	1 cut(s)	105
SpeI	ACTAGT	1 cut(s)	809
Sse9I	AATT	4 cut(s)	211, 597, 644, 733
SsiI	CCGC	1 cut(s)	396
SspI	AATATT	1 cut(s)	621
SspMI	CTAG	4 cut(s)	492, 540, 776, 810
StyD4I	CCNGG	2 cut(s)	34, 928
StyI	CCWWGG	2 cut(s)	53, 106
TaaI	ACNGT	8 cut(s)	25, 291, 507, 609, 635, 824, 831, 913
TaiI	ACGT	3 cut(s)	681, 907, 941
TaqI	TCGA	2 cut(s)	275, 601
TasI	AATT	4 cut(s)	211, 597, 644, 733
TatI	WGTACW	2 cut(s)	20, 764
TfiI	GAWTC	1 cut(s)	495
Tru1I	TTAA	2 cut(s)	201, 611
Tru9I	TTAA	2 cut(s)	201, 611
TscAI	CASTG	2 cut(s)	467, 640
TseI	GCWGC	3 cut(s)	162, 284, 626
TspDTI	ATGAA	5 cut(s)	239, 593, 597, 687, 801
TspRI	CASTG	2 cut(s)	467, 640
VpaK11BI	GGWCC	2 cut(s)	50, 548
XapI	RAATTY	2 cut(s)	211, 597
XcmI	CCANNNNNNNNNTGG	2 cut(s)	650, 863
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	4 cut(s)	492, 540, 776, 810
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.