Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000168.1

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Reverse (-)

15121 .. 15825

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000168.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggagataggcatgtataaatgtaggtggtcgaccatagctgcacagttaccaaagagaacagacaatgagataaagaactactggaacacacatctaaagaagaggttagccaagatagggtttgatcctgtaacccacaagcccaagaccgccatcctcgcctctgctgatggtggcgacccgaagaacctctcaaacctcagccacatagctcagtgggaaactgctcggcttcaagcagaagctagattctccggacagtcaaaactactcatcagtcatgaccaacctcctagatttggacccgtgcctgtaccacaatgccttgacatgaatgaaagagcacgagaaattcgattactgttaaagtcaatattagctgcagacagtggtatccaattaggtggtggtattggtactacagccgcccacgttgggcaggaggttggttcatttggtaaagttgatgttgagggcttgcttactaattgtgatcagtttgaggctccaagaaccagtacatcagttctaggttttgatgaagtttttggggagtccggtactagtaatgactacagtgaactgttggaggcattactacagcacaaccataacaatactggatttgaagttggggatgcttggagtttggaacaacgtgaaacagtaatgatgagcgagccgggaacaacgtacatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

234

Amino Acids

25.71

Weight (kDa)

5.66

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	257
AciI	CCGC	2 cut(s)	153, 429
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	354
AfaI	GTAC	5 cut(s)	318, 421, 523, 565, 698
AfiI	CCNNNNNNNGG	3 cut(s)	120, 302, 438
AgsI	TTSAA	2 cut(s)	239, 632
AhlI	ACTAGT	1 cut(s)	566
AluBI	AGCT	4 cut(s)	41, 215, 248, 383
AluI	AGCT	4 cut(s)	41, 215, 248, 383
Alw21I	GWGCWC	1 cut(s)	349
AlwI	GGATC	1 cut(s)	122
Aor13HI	TCCGGA	1 cut(s)	257
ApeKI	GCWGC	2 cut(s)	41, 383
ApoI	RAATTY	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	305
AsuC2I	CCSGG	1 cut(s)	687
AvaII	GGWCC	1 cut(s)	305
BaeI	ACNNNNGTAYC	2 cut(s)	379, 412
BauI	CACGAG	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	349
BbvCI	CCTCAGC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	28, 370
BccI	CCATC	2 cut(s)	164, 167
BciVI	GTATCC	1 cut(s)	407
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	687
BcuI	ACTAGT	1 cut(s)	566
BfaI	CTAG	4 cut(s)	249, 297, 533, 567
BfmI	CTRYAG	4 cut(s)	384, 423, 577, 602
BfuI	GTATCC	1 cut(s)	407
BisI	GCNGC	3 cut(s)	42, 384, 429
BlsI	GCNGC	3 cut(s)	43, 385, 430
Bme1390I	CCNGG	1 cut(s)	687
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	2 cut(s)	307, 510
BmrFI	CCNGG	1 cut(s)	687
BmsI	GCATC	1 cut(s)	631
Bpu10I	CCTNAGC	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	687
BsaWI	WCCGGW	2 cut(s)	257, 560
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 302, 438
Bse1I	ACTGG	3 cut(s)	89, 519, 628
BseAI	TCCGGA	1 cut(s)	257
BseGI	GGATG	2 cut(s)	156, 646
BseLI	CCNNNNNNNGG	3 cut(s)	120, 302, 438
BseMII	CTCAG	2 cut(s)	217, 230
BseNI	ACTGG	3 cut(s)	89, 519, 628
BseXI	GCAGC	2 cut(s)	28, 370
BsgI	GTGCAG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	3 cut(s)	258, 561, 686
BslI	CCNNNNNNNGG	3 cut(s)	120, 302, 438
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp13I	TCCGGA	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	127, 496
BspACI	CCGC	2 cut(s)	153, 429
BspCNI	CTCAG	2 cut(s)	216, 229
BspEI	TCCGGA	1 cut(s)	257
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	307, 510
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	1 cut(s)	122
BsrI	ACTGG	3 cut(s)	89, 519, 628
BssMI	GATC	2 cut(s)	127, 496
BssSI	CACGAG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	348
Bst4CI	ACNGT	7 cut(s)	48, 264, 366, 392, 581, 588, 670
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	482, 683
BstDEI	CTNAG	2 cut(s)	203, 216
BstF5I	GGATG	2 cut(s)	156, 646
BstKTI	GATC	2 cut(s)	130, 499
BstMBI	GATC	2 cut(s)	127, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	685
BstSFI	CTRYAG	4 cut(s)	384, 423, 577, 602
BstV1I	GCAGC	2 cut(s)	28, 370
BstXI	CCANNNNNNTGG	1 cut(s)	407
BsuI	GTATCC	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	156, 646
BtsIMutI	CAGTG	3 cut(s)	224, 397, 586
Cac8I	GCNNGC	2 cut(s)	482, 683
CciI	TCATGA	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	305
Csp6I	GTAC	5 cut(s)	317, 420, 522, 564, 697
CviAII	CATG	3 cut(s)	13, 284, 334
CviQI	GTAC	5 cut(s)	317, 420, 522, 564, 697
DdeI	CTNAG	2 cut(s)	203, 216
DpnI	GATC	2 cut(s)	129, 498
DpnII	GATC	2 cut(s)	127, 496
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	305
FaeI	CATG	3 cut(s)	16, 287, 337
FaiI	YATR	7 cut(s)	14, 18, 38, 212, 285, 335, 615
FatI	CATG	3 cut(s)	12, 283, 333
FbaI	TGATCA	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	3 cut(s)	42, 384, 429
FokI	GGATG	2 cut(s)	143, 653
Fsp4HI	GCNGC	3 cut(s)	42, 384, 429
FspBI	CTAG	4 cut(s)	249, 297, 533, 567
GluI	GCNGC	3 cut(s)	42, 384, 429
HapII	CCGG	3 cut(s)	258, 561, 686
Hin1II	CATG	3 cut(s)	16, 287, 337
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	252, 557
HpaII	CCGG	3 cut(s)	258, 561, 686
Hpy166II	GTNNAC	2 cut(s)	33, 584
Hpy188III	TCNNGA	2 cut(s)	258, 284
Hpy8I	GTNNAC	2 cut(s)	33, 584
HpyCH4III	ACNGT	7 cut(s)	48, 264, 366, 392, 581, 588, 670
HpyCH4IV	ACGT	3 cut(s)	435, 661, 695
HpyCH4V	TGCA	2 cut(s)	44, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	203, 216
HpySE526I	ACGT	3 cut(s)	435, 661, 695
Hsp92II	CATG	3 cut(s)	16, 287, 337
Kpn2I	TCCGGA	1 cut(s)	257
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	127, 496
LmnI	GCTCC	1 cut(s)	514
LpnPI	CCDG	9 cut(s)	70, 144, 271, 327, 428, 532, 574, 609, 699
Lsp1109I	GCAGC	2 cut(s)	28, 370
LweI	GCATC	1 cut(s)	631
MaeI	CTAG	4 cut(s)	249, 297, 533, 567
MaeII	ACGT	3 cut(s)	435, 661, 695
MaeIII	GTNAC	2 cut(s)	48, 133
MalI	GATC	2 cut(s)	129, 498
MboI	GATC	2 cut(s)	127, 496
MboII	GAAGA	2 cut(s)	115, 199
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	3 cut(s)	354, 401, 490
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	570
MroI	TCCGGA	1 cut(s)	257
MseI	TTAA	1 cut(s)	368
MspI	CCGG	3 cut(s)	258, 561, 686
MspR9I	CCNGG	1 cut(s)	687
MwoI	GCNNNNNNNGC	1 cut(s)	161
NciI	CCSGG	1 cut(s)	687
NdeII	GATC	2 cut(s)	127, 496
NlaIII	CATG	3 cut(s)	16, 287, 337
NlaIV	GGNNCC	2 cut(s)	307, 510
NmeAIII	GCCGAG	1 cut(s)	211
NspI	RCATGY	1 cut(s)	16
PagI	TCATGA	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	252
PkrI	GCNGC	3 cut(s)	43, 385, 430
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PspN4I	GGNNCC	2 cut(s)	307, 510
PspPI	GGNCC	1 cut(s)	305
PstI	CTGCAG	1 cut(s)	388
RsaI	GTAC	5 cut(s)	318, 421, 523, 565, 698
RsaNI	GTAC	5 cut(s)	317, 420, 522, 564, 697
SalI	GTCGAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	3 cut(s)	42, 384, 429
Sau3AI	GATC	2 cut(s)	127, 496
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	1 cut(s)	687
SduI	GDGCHC	1 cut(s)	349
SfaNI	GCATC	1 cut(s)	631
SfcI	CTRYAG	4 cut(s)	384, 423, 577, 602
SinI	GGWCC	1 cut(s)	305
SpeI	ACTAGT	1 cut(s)	566
Sse9I	AATT	3 cut(s)	354, 401, 490
SsiI	CCGC	2 cut(s)	153, 429
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	4 cut(s)	249, 297, 533, 567
StyD4I	CCNGG	1 cut(s)	685
TaaI	ACNGT	7 cut(s)	48, 264, 366, 392, 581, 588, 670
TaiI	ACGT	3 cut(s)	438, 664, 698
TaqI	TCGA	2 cut(s)	32, 358
TasI	AATT	3 cut(s)	354, 401, 490
TatI	WGTACW	1 cut(s)	521
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	3 cut(s)	224, 397, 586
TseI	GCWGC	2 cut(s)	41, 383
TspDTI	ATGAA	4 cut(s)	350, 354, 444, 558
TspRI	CASTG	3 cut(s)	224, 397, 586
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	2 cut(s)	407, 620
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	4 cut(s)	249, 297, 533, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.