Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Forward (+)

33054703 .. 33056659

Gene Structure 1957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1196400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGAAAATCTAGTTGCTATGCAGCGGCGTCAGGGATAAAGAGAGGTCCATGGACTCCTGAGGAGGACAGAAAGCTTTTAGCGTACATTCAACTACACGGCCATGGAAGCTGGCGTTCCTTGCCCCAGAAAGCTGGTCTCAAAAGATGCGGGAAGAGCTGTAGGCTAAGGTGGAGAAACTACCTCAGACCTGATATTAAGAGGGGAAATTTCAGCTTGCATGAAGACCAAACCATCATTCAACTCCATGCACTTCTTGGCAACAGGTGGTCGGCCATAGCTGCCCATTTGCCAAGGAGAACAGACAACGAGGTCAAGAACTATTGGAACACGCATCTGAAGAAAAGGTTGGCAAAGATAGGGTTTGACCCTGTAACCCACAAGCCCAAGGCTGCCATTCTTGGCTCTGCAAATGGCGACCCCAAAAACTGGTCAAATCTCAGCCACATTGCTCAATGGGAAAGTGCCAGGCTTCAAGCCGAAGCAAGATTTGTCAAAGAATCCAAACTGCGTATGCTTGAATCTGCGCCAGCGCCGTCGCTTTCCGATGAACATCATCAGTTTGCTCCACCACTAGTTCCACAGTGCCTTGACATACTACGAGCATCCGCATGGGAAAGCCTAATATCCATGTCAAGGTCATCGTCCAGATCGGCTGCCCTAACCAATATGAACGGCCAGGGTAATGTTTCATTTGGTGATCATCATCATGTTAATGATCATGGTATTAATATGAACGCCCAAGATTATGGCTCTAATTTTGAGGCTCCAACATCTGATCAACAATTATCAAGCCTGATGGGATATGACGATGCAGCGCTCATGTCATCAGTAGCCACTGGATCGATGAATATTAATGAACTTTTCGGTGAATACTGTGGTGATGAATGCAGTGAATTATTGCCGGCACTCCACCACGATACTGGGTTTGAATTTGGGGATGCTTGGACTAGTTTGGAACAATTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

324

Amino Acids

36.0

Weight (kDa)

7.74

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	6.7e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 77	1.7e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 113	4.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 123	3.9e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
AccB7I	CCANNNNNTGG	1 cut(s)	429
AciI	CCGC	3 cut(s)	26, 150, 609
AclWI	GGATC	1 cut(s)	850
AcoI	YGGCCR	3 cut(s)	100, 273, 676
AcsI	RAATTY	2 cut(s)	208, 932
AcuI	CTGAAG	1 cut(s)	359
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	1 cut(s)	86
AfeI	AGCGCT	1 cut(s)	819
AfiI	CCNNNNNNNGG	2 cut(s)	429, 636
AgsI	TTSAA	5 cut(s)	92, 242, 476, 521, 932
AhlI	ACTAGT	2 cut(s)	574, 950
AjnI	CCWGG	2 cut(s)	467, 678
AjuI	GAANNNNNNNTTGG	4 cut(s)	222, 254, 332, 364
AluBI	AGCT	6 cut(s)	76, 111, 134, 159, 216, 281
AluI	AGCT	6 cut(s)	76, 111, 134, 159, 216, 281
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	850
Aor51HI	AGCGCT	1 cut(s)	819
AoxI	GGCC	3 cut(s)	100, 273, 676
ApeKI	GCWGC	5 cut(s)	23, 281, 392, 656, 815
ApoI	RAATTY	2 cut(s)	208, 932
AseI	ATTAAT	3 cut(s)	729, 855, 965
AspLEI	GCGC	3 cut(s)	529, 535, 820
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	3 cut(s)	710, 881, 893
AvaII	GGWCC	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	231
BbvI	GCAGC	5 cut(s)	35, 268, 379, 643, 827
BccI	CCATC	2 cut(s)	242, 793
BceAI	ACGGC	3 cut(s)	115, 520, 691
BciT130I	CCWGG	2 cut(s)	469, 680
BclI	TGATCA	3 cut(s)	700, 718, 778
BcoDI	GTCTC	1 cut(s)	143
BcuI	ACTAGT	2 cut(s)	574, 950
BfaI	CTAG	3 cut(s)	12, 575, 951
BfmI	CTRYAG	1 cut(s)	160
BfoI	RGCGCY	2 cut(s)	536, 821
BisI	GCNGC	6 cut(s)	24, 27, 282, 393, 657, 816
BlsI	GCNGC	6 cut(s)	25, 28, 283, 394, 658, 817
Bme1390I	CCNGG	2 cut(s)	469, 680
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	768
BmrFI	CCNGG	2 cut(s)	469, 680
BmrI	ACTGGG	1 cut(s)	933
BmsI	GCATC	5 cut(s)	137, 343, 614, 802, 931
BmuI	ACTGGG	1 cut(s)	933
BpiI	GAAGAC	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	167
Bsa29I	ATCGAT	1 cut(s)	845
BsaBI	GATNNNNATC	2 cut(s)	552, 705
BsaHI	GRCGYC	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	5 cut(s)	50, 103, 293, 387, 679
Bsc4I	CCNNNNNNNGG	2 cut(s)	429, 636
Bse118I	RCCGGY	1 cut(s)	904
Bse1I	ACTGG	3 cut(s)	434, 844, 928
Bse21I	CCTNAGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	447
Bse8I	GATNNNNATC	2 cut(s)	552, 705
BseBI	CCWGG	2 cut(s)	469, 680
BseCI	ATCGAT	1 cut(s)	845
BseDI	CCNNGG	5 cut(s)	50, 103, 293, 387, 679
BseGI	GGATG	2 cut(s)	605, 946
BseJI	GATNNNNATC	2 cut(s)	552, 705
BseLI	CCNNNNNNNGG	2 cut(s)	429, 636
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	3 cut(s)	51, 199, 454
BseNI	ACTGG	3 cut(s)	434, 844, 928
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	5 cut(s)	35, 268, 379, 643, 827
BshFI	GGCC	3 cut(s)	102, 275, 678
BshVI	ATCGAT	1 cut(s)	845
BsiSI	CCGG	1 cut(s)	905
BslI	CCNNNNNNNGG	2 cut(s)	429, 636
BsmAI	GTCTC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	893
BsnI	GGCC	3 cut(s)	102, 275, 678
Bso31I	GGTCTC	1 cut(s)	143
Bsp143I	GATC	5 cut(s)	650, 700, 718, 778, 842
Bsp19I	CCATGG	2 cut(s)	50, 103
BspACI	CCGC	3 cut(s)	26, 150, 609
BspANI	GGCC	3 cut(s)	102, 275, 678
BspCNI	CTCAG	3 cut(s)	52, 198, 453
BspDI	ATCGAT	1 cut(s)	845
BspLI	GGNNCC	1 cut(s)	768
BspPI	GGATC	1 cut(s)	850
BspQI	GCTCTTC	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	904
BsrI	ACTGG	3 cut(s)	434, 844, 928
BssAI	RCCGGY	1 cut(s)	904
BssECI	CCNNGG	5 cut(s)	50, 103, 293, 387, 679
BssMI	GATC	5 cut(s)	650, 700, 718, 778, 842
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	4 cut(s)	50, 103, 293, 387
Bst2UI	CCWGG	2 cut(s)	469, 680
Bst4CI	ACNGT	2 cut(s)	585, 878
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	29
BstC8I	GCNNGC	4 cut(s)	113, 218, 531, 906
BstDEI	CTNAG	4 cut(s)	60, 167, 185, 440
BstDSI	CCRYGG	2 cut(s)	50, 103
BstF5I	GGATG	2 cut(s)	605, 946
BstH2I	RGCGCY	2 cut(s)	536, 821
BstHHI	GCGC	3 cut(s)	529, 535, 820
BstKTI	GATC	5 cut(s)	653, 703, 721, 781, 845
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	5 cut(s)	650, 700, 718, 778, 842
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 121, 156, 281
BstNI	CCWGG	2 cut(s)	469, 680
BstSCI	CCNGG	2 cut(s)	467, 678
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	5 cut(s)	35, 268, 379, 643, 827
BstV2I	GAAGAC	1 cut(s)	231
BstXI	CCANNNNNNTGG	3 cut(s)	134, 749, 923
Bsu15I	ATCGAT	1 cut(s)	845
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	3 cut(s)	102, 275, 678
BsuTUI	ATCGAT	1 cut(s)	845
BtgI	CCRYGG	2 cut(s)	50, 103
BtsCI	GGATG	2 cut(s)	605, 946
BtsI	GCAGTG	1 cut(s)	898
BtsIMutI	CAGTG	3 cut(s)	590, 837, 898
Cac8I	GCNNGC	4 cut(s)	113, 218, 531, 906
CfoI	GCGC	3 cut(s)	529, 535, 820
Cfr10I	RCCGGY	1 cut(s)	904
Cfr13I	GGNCC	1 cut(s)	47
ClaI	ATCGAT	1 cut(s)	845
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	9 cut(s)	51, 104, 221, 248, 612, 631, 710, 722, 823
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	4 cut(s)	60, 167, 185, 440
DpnI	GATC	5 cut(s)	652, 702, 720, 780, 844
DpnII	GATC	5 cut(s)	650, 700, 718, 778, 842
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	3 cut(s)	100, 273, 676
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco130I	CCWWGG	4 cut(s)	50, 103, 293, 387
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	47
Eco47III	AGCGCT	1 cut(s)	819
Eco57I	CTGAAG	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	467, 678
EcoT14I	CCWWGG	4 cut(s)	50, 103, 293, 387
ErhI	CCWWGG	4 cut(s)	50, 103, 293, 387
FaeI	CATG	9 cut(s)	54, 107, 224, 251, 615, 634, 713, 725, 826
FatI	CATG	9 cut(s)	50, 103, 220, 247, 611, 630, 709, 721, 822
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	3 cut(s)	700, 718, 778
Fnu4HI	GCNGC	6 cut(s)	24, 27, 282, 393, 657, 816
FokI	GGATG	2 cut(s)	592, 953
Fsp4HI	GCNGC	6 cut(s)	24, 27, 282, 393, 657, 816
FspBI	CTAG	3 cut(s)	12, 575, 951
GlaI	GCGC	3 cut(s)	528, 534, 819
GluI	GCNGC	6 cut(s)	24, 27, 282, 393, 657, 816
HaeII	RGCGCY	2 cut(s)	536, 821
HaeIII	GGCC	3 cut(s)	102, 275, 678
HapII	CCGG	1 cut(s)	905
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	3 cut(s)	529, 535, 820
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	9 cut(s)	54, 107, 224, 251, 615, 634, 713, 725, 826
Hin6I	GCGC	3 cut(s)	527, 533, 818
HinP1I	GCGC	3 cut(s)	527, 533, 818
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	3 cut(s)	55, 500, 521
HpaII	CCGG	1 cut(s)	905
HphI	GGTGA	3 cut(s)	710, 881, 893
Hpy188I	TCNGA	4 cut(s)	188, 339, 547, 778
Hpy188III	TCNNGA	3 cut(s)	59, 316, 648
Hpy99I	CGWCG	1 cut(s)	541
HpyCH4III	ACNGT	2 cut(s)	585, 878
HpyCH4V	TGCA	6 cut(s)	23, 220, 251, 410, 815, 891
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 121, 156, 281
HpyF3I	CTNAG	4 cut(s)	60, 167, 185, 440
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	9 cut(s)	54, 107, 224, 251, 615, 634, 713, 725, 826
HspAI	GCGC	3 cut(s)	527, 533, 818
KroI	GCCGGC	1 cut(s)	904
KroNI	GCCGGC	1 cut(s)	906
Ksp22I	TGATCA	3 cut(s)	700, 718, 778
Kzo9I	GATC	5 cut(s)	650, 700, 718, 778, 842
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	2 cut(s)	571, 772
Lsp1109I	GCAGC	5 cut(s)	35, 268, 379, 643, 827
LweI	GCATC	5 cut(s)	137, 343, 614, 802, 931
MaeI	CTAG	3 cut(s)	12, 575, 951
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	5 cut(s)	652, 702, 720, 780, 844
MboI	GATC	5 cut(s)	650, 700, 718, 778, 842
MboII	GAAGA	3 cut(s)	166, 236, 352
MluCI	AATT	6 cut(s)	208, 757, 785, 896, 932, 962
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	794
MnlI	CCTC	7 cut(s)	38, 55, 58, 194, 195, 304, 757
MroNI	GCCGGC	1 cut(s)	904
MseI	TTAA	5 cut(s)	198, 714, 729, 855, 965
MslI	CAYNNNNRTG	4 cut(s)	102, 610, 708, 714
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	905
MspR9I	CCNGG	2 cut(s)	469, 680
Mva1269I	GAATGC	1 cut(s)	893
MvaI	CCWGG	2 cut(s)	469, 680
MwoI	GCNNNNNNNGC	4 cut(s)	108, 121, 156, 281
NaeI	GCCGGC	1 cut(s)	906
NcoI	CCATGG	2 cut(s)	50, 103
NdeII	GATC	5 cut(s)	650, 700, 718, 778, 842
NgoMIV	GCCGGC	1 cut(s)	904
NlaIII	CATG	9 cut(s)	54, 107, 224, 251, 615, 634, 713, 725, 826
NlaIV	GGNNCC	1 cut(s)	768
PciSI	GCTCTTC	1 cut(s)	149
PctI	GAATGC	1 cut(s)	893
PdiI	GCCGGC	1 cut(s)	906
PfeI	GAWTC	2 cut(s)	500, 521
PflMI	CCANNNNNTGG	1 cut(s)	429
PkrI	GCNGC	6 cut(s)	25, 28, 283, 394, 658, 817
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PshBI	ATTAAT	3 cut(s)	729, 855, 965
Psp6I	CCWGG	2 cut(s)	467, 678
PspGI	CCWGG	2 cut(s)	467, 678
PspN4I	GGNNCC	1 cut(s)	768
PspPI	GGNCC	1 cut(s)	47
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	4 cut(s)	102, 610, 708, 714
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	5 cut(s)	198, 714, 729, 855, 965
SatI	GCNGC	6 cut(s)	24, 27, 282, 393, 657, 816
Sau3AI	GATC	5 cut(s)	650, 700, 718, 778, 842
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	469, 680
SfaNI	GCATC	5 cut(s)	137, 343, 614, 802, 931
SfcI	CTRYAG	1 cut(s)	160
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	4 cut(s)	102, 610, 708, 714
SpeI	ACTAGT	2 cut(s)	574, 950
Sse9I	AATT	6 cut(s)	208, 757, 785, 896, 932, 962
SsiI	CCGC	3 cut(s)	26, 150, 609
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	3 cut(s)	12, 575, 951
StyD4I	CCNGG	2 cut(s)	467, 678
StyI	CCWWGG	4 cut(s)	50, 103, 293, 387
TaaI	ACNGT	2 cut(s)	585, 878
TaqI	TCGA	1 cut(s)	845
TasI	AATT	6 cut(s)	208, 757, 785, 896, 932, 962
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	500, 521
Tru1I	TTAA	5 cut(s)	198, 714, 729, 855, 965
Tru9I	TTAA	5 cut(s)	198, 714, 729, 855, 965
TscAI	CASTG	3 cut(s)	590, 844, 898
TseI	GCWGC	5 cut(s)	23, 281, 392, 656, 815
TspDTI	ATGAA	8 cut(s)	237, 564, 681, 686, 749, 863, 873, 900
TspRI	CASTG	3 cut(s)	590, 844, 898
Van91I	CCANNNNNTGG	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	47
VspI	ATTAAT	3 cut(s)	729, 855, 965
XapI	RAATTY	2 cut(s)	208, 932
XcmI	CCANNNNNNNNNTGG	2 cut(s)	254, 920
XspI	CTAG	3 cut(s)	12, 575, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.