transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 429 |
| AciI | CCGC | 2 cut(s) | 26, 150 |
| AcoI | YGGCCR | 2 cut(s) | 100, 273 |
| AcsI | RAATTY | 1 cut(s) | 208 |
| AcuI | CTGAAG | 1 cut(s) | 359 |
| AcyI | GRCGYC | 1 cut(s) | 29 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 429 |
| AgsI | TTSAA | 3 cut(s) | 92, 242, 476 |
| AhlI | ACTAGT | 1 cut(s) | 575 |
| AjnI | CCWGG | 1 cut(s) | 467 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 222, 254, 332, 364 |
| AluBI | AGCT | 7 cut(s) | 76, 83, 111, 134, 159, 216, 281 |
| AluI | AGCT | 7 cut(s) | 76, 83, 111, 134, 159, 216, 281 |
| Alw26I | GTCTC | 1 cut(s) | 143 |
| AoxI | GGCC | 2 cut(s) | 100, 273 |
| ApeKI | GCWGC | 3 cut(s) | 23, 281, 392 |
| ApoI | RAATTY | 1 cut(s) | 208 |
| AspLEI | GCGC | 2 cut(s) | 529, 535 |
| AspS9I | GGNCC | 1 cut(s) | 47 |
| AvaII | GGWCC | 1 cut(s) | 47 |
| AxyI | CCTNAGG | 1 cut(s) | 60 |
| BbsI | GAAGAC | 1 cut(s) | 231 |
| BbvI | GCAGC | 3 cut(s) | 35, 268, 379 |
| BccI | CCATC | 1 cut(s) | 242 |
| BceAI | ACGGC | 2 cut(s) | 115, 520 |
| BciT130I | CCWGG | 1 cut(s) | 469 |
| BcoDI | GTCTC | 1 cut(s) | 143 |
| BcuI | ACTAGT | 1 cut(s) | 575 |
| BfaI | CTAG | 2 cut(s) | 12, 576 |
| BfmI | CTRYAG | 1 cut(s) | 160 |
| BfoI | RGCGCY | 1 cut(s) | 536 |
| BglII | AGATCT | 1 cut(s) | 488 |
| BisI | GCNGC | 4 cut(s) | 24, 27, 282, 393 |
| BlsI | GCNGC | 4 cut(s) | 25, 28, 283, 394 |
| Bme1390I | CCNGG | 1 cut(s) | 469 |
| Bme18I | GGWCC | 1 cut(s) | 47 |
| BmgT120I | GGNCC | 1 cut(s) | 47 |
| BmrFI | CCNGG | 1 cut(s) | 469 |
| BmsI | GCATC | 1 cut(s) | 137 |
| BpiI | GAAGAC | 1 cut(s) | 231 |
| Bpu10I | CCTNAGC | 1 cut(s) | 167 |
| Bsa29I | ATCGAT | 1 cut(s) | 550 |
| BsaBI | GATNNNNATC | 1 cut(s) | 556 |
| BsaHI | GRCGYC | 1 cut(s) | 29 |
| BsaI | GGTCTC | 1 cut(s) | 143 |
| BsaJI | CCNNGG | 4 cut(s) | 50, 103, 293, 387 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 429 |
| Bse1I | ACTGG | 1 cut(s) | 434 |
| Bse21I | CCTNAGG | 1 cut(s) | 60 |
| Bse3DI | GCAATG | 1 cut(s) | 447 |
| Bse8I | GATNNNNATC | 1 cut(s) | 556 |
| BseBI | CCWGG | 1 cut(s) | 469 |
| BseCI | ATCGAT | 1 cut(s) | 550 |
| BseDI | CCNNGG | 4 cut(s) | 50, 103, 293, 387 |
| BseJI | GATNNNNATC | 1 cut(s) | 556 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 429 |
| BseMI | GCAATG | 1 cut(s) | 447 |
| BseMII | CTCAG | 2 cut(s) | 51, 199 |
| BseNI | ACTGG | 1 cut(s) | 434 |
| BseRI | GAGGAG | 1 cut(s) | 77 |
| BseXI | GCAGC | 3 cut(s) | 35, 268, 379 |
| Bsh1285I | CGRYCG | 1 cut(s) | 550 |
| BshFI | GGCC | 2 cut(s) | 102, 275 |
| BshVI | ATCGAT | 1 cut(s) | 550 |
| BsiEI | CGRYCG | 1 cut(s) | 550 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 429 |
| BsmAI | GTCTC | 1 cut(s) | 143 |
| BsnI | GGCC | 2 cut(s) | 102, 275 |
| Bso31I | GGTCTC | 1 cut(s) | 143 |
| Bsp143I | GATC | 3 cut(s) | 488, 547, 551 |
| Bsp19I | CCATGG | 2 cut(s) | 50, 103 |
| BspACI | CCGC | 2 cut(s) | 26, 150 |
| BspANI | GGCC | 2 cut(s) | 102, 275 |
| BspCNI | CTCAG | 2 cut(s) | 52, 198 |
| BspDI | ATCGAT | 1 cut(s) | 550 |
| BspQI | GCTCTTC | 1 cut(s) | 149 |
| BspTNI | GGTCTC | 1 cut(s) | 143 |
| BsrDI | GCAATG | 1 cut(s) | 447 |
| BsrI | ACTGG | 1 cut(s) | 434 |
| BssECI | CCNNGG | 4 cut(s) | 50, 103, 293, 387 |
| BssMI | GATC | 3 cut(s) | 488, 547, 551 |
| BssNI | GRCGYC | 1 cut(s) | 29 |
| BssT1I | CCWWGG | 4 cut(s) | 50, 103, 293, 387 |
| Bst2UI | CCWGG | 1 cut(s) | 469 |
| Bst4CI | ACNGT | 1 cut(s) | 586 |
| Bst6I | CTCTTC | 1 cut(s) | 149 |
| BstACI | GRCGYC | 1 cut(s) | 29 |
| BstC8I | GCNNGC | 3 cut(s) | 113, 218, 531 |
| BstDEI | CTNAG | 4 cut(s) | 60, 167, 185, 440 |
| BstDSI | CCRYGG | 2 cut(s) | 50, 103 |
| BstH2I | RGCGCY | 1 cut(s) | 536 |
| BstHHI | GCGC | 2 cut(s) | 529, 535 |
| BstKTI | GATC | 3 cut(s) | 491, 550, 554 |
| BstMAI | GTCTC | 1 cut(s) | 143 |
| BstMBI | GATC | 3 cut(s) | 488, 547, 551 |
| BstMCI | CGRYCG | 1 cut(s) | 550 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 108, 121, 156, 281 |
| BstNI | CCWGG | 1 cut(s) | 469 |
| BstSCI | CCNGG | 1 cut(s) | 467 |
| BstSFI | CTRYAG | 1 cut(s) | 160 |
| BstV1I | GCAGC | 3 cut(s) | 35, 268, 379 |
| BstV2I | GAAGAC | 1 cut(s) | 231 |
| BstX2I | RGATCY | 1 cut(s) | 488 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 134 |
| BstYI | RGATCY | 1 cut(s) | 488 |
| Bsu15I | ATCGAT | 1 cut(s) | 550 |
| Bsu36I | CCTNAGG | 1 cut(s) | 60 |
| BsuRI | GGCC | 2 cut(s) | 102, 275 |
| BsuTUI | ATCGAT | 1 cut(s) | 550 |
| BtgI | CCRYGG | 2 cut(s) | 50, 103 |
| BtsIMutI | CAGTG | 1 cut(s) | 591 |
| Cac8I | GCNNGC | 3 cut(s) | 113, 218, 531 |
| CfoI | GCGC | 2 cut(s) | 529, 535 |
| Cfr13I | GGNCC | 1 cut(s) | 47 |
| ClaI | ATCGAT | 1 cut(s) | 550 |
| CseI | GACGC | 1 cut(s) | 18 |
| CviAII | CATG | 4 cut(s) | 51, 104, 248, 518 |
| DdeI | CTNAG | 4 cut(s) | 60, 167, 185, 440 |
| DpnI | GATC | 3 cut(s) | 490, 549, 553 |
| DpnII | GATC | 3 cut(s) | 488, 547, 551 |
| EaeI | YGGCCR | 2 cut(s) | 100, 273 |
| Eam1104I | CTCTTC | 1 cut(s) | 149 |
| EarI | CTCTTC | 1 cut(s) | 149 |
| Eco130I | CCWWGG | 4 cut(s) | 50, 103, 293, 387 |
| Eco31I | GGTCTC | 1 cut(s) | 143 |
| Eco47I | GGWCC | 1 cut(s) | 47 |
| Eco57I | CTGAAG | 1 cut(s) | 359 |
| Eco81I | CCTNAGG | 1 cut(s) | 60 |
| EcoRII | CCWGG | 1 cut(s) | 467 |
| EcoT14I | CCWWGG | 4 cut(s) | 50, 103, 293, 387 |
| EcoT22I | ATGCAT | 1 cut(s) | 519 |
| ErhI | CCWWGG | 4 cut(s) | 50, 103, 293, 387 |
| FaeI | CATG | 4 cut(s) | 54, 107, 251, 521 |
| FaiI | YATR | 8 cut(s) | 21, 52, 97, 105, 249, 278, 515, 519 |
| FatI | CATG | 4 cut(s) | 50, 103, 247, 517 |
| FauI | CCCGC | 1 cut(s) | 143 |
| Fnu4HI | GCNGC | 4 cut(s) | 24, 27, 282, 393 |
| Fsp4HI | GCNGC | 4 cut(s) | 24, 27, 282, 393 |
| FspBI | CTAG | 2 cut(s) | 12, 576 |
| GlaI | GCGC | 2 cut(s) | 528, 534 |
| GluI | GCNGC | 4 cut(s) | 24, 27, 282, 393 |
| HaeII | RGCGCY | 1 cut(s) | 536 |
| HaeIII | GGCC | 2 cut(s) | 102, 275 |
| HgaI | GACGC | 1 cut(s) | 18 |
| HhaI | GCGC | 2 cut(s) | 529, 535 |
| Hin1I | GRCGYC | 1 cut(s) | 29 |
| Hin1II | CATG | 4 cut(s) | 54, 107, 251, 521 |
| Hin6I | GCGC | 2 cut(s) | 527, 533 |
| HinP1I | GCGC | 2 cut(s) | 527, 533 |
| HindIII | AAGCTT | 1 cut(s) | 74 |
| HinfI | GANTC | 3 cut(s) | 55, 500, 521 |
| Hpy188I | TCNGA | 3 cut(s) | 188, 339, 547 |
| Hpy188III | TCNNGA | 2 cut(s) | 59, 316 |
| Hpy99I | CGWCG | 1 cut(s) | 541 |
| HpyCH4III | ACNGT | 1 cut(s) | 586 |
| HpyCH4V | TGCA | 5 cut(s) | 23, 220, 251, 410, 517 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 108, 121, 156, 281 |
| HpyF3I | CTNAG | 4 cut(s) | 60, 167, 185, 440 |
| Hsp92I | GRCGYC | 1 cut(s) | 29 |
| Hsp92II | CATG | 4 cut(s) | 54, 107, 251, 521 |
| HspAI | GCGC | 2 cut(s) | 527, 533 |
| Kzo9I | GATC | 3 cut(s) | 488, 547, 551 |
| LguI | GCTCTTC | 1 cut(s) | 149 |
| LmnI | GCTCC | 1 cut(s) | 572 |
| Lsp1109I | GCAGC | 3 cut(s) | 35, 268, 379 |
| LweI | GCATC | 1 cut(s) | 137 |
| MaeI | CTAG | 2 cut(s) | 12, 576 |
| MaeIII | GTNAC | 1 cut(s) | 373 |
| MalI | GATC | 3 cut(s) | 490, 549, 553 |
| MboI | GATC | 3 cut(s) | 488, 547, 551 |
| MboII | GAAGA | 3 cut(s) | 166, 236, 352 |
| MflI | RGATCY | 1 cut(s) | 488 |
| MluCI | AATT | 1 cut(s) | 208 |
| MlyI | GAGTC | 1 cut(s) | 49 |
| MnlI | CCTC | 6 cut(s) | 38, 55, 58, 194, 195, 304 |
| Mph1103I | ATGCAT | 1 cut(s) | 519 |
| MseI | TTAA | 1 cut(s) | 198 |
| MspA1I | CMGCKG | 1 cut(s) | 26 |
| MspR9I | CCNGG | 1 cut(s) | 469 |
| MvaI | CCWGG | 1 cut(s) | 469 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 108, 121, 156, 281 |
| NcoI | CCATGG | 2 cut(s) | 50, 103 |
| NdeII | GATC | 3 cut(s) | 488, 547, 551 |
| NlaIII | CATG | 4 cut(s) | 54, 107, 251, 521 |
| NsiI | ATGCAT | 1 cut(s) | 519 |
| PciSI | GCTCTTC | 1 cut(s) | 149 |
| PfeI | GAWTC | 2 cut(s) | 500, 521 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 429 |
| PkrI | GCNGC | 4 cut(s) | 25, 28, 283, 394 |
| Ple19I | CGATCG | 1 cut(s) | 550 |
| PleI | GAGTC | 1 cut(s) | 49 |
| PpsI | GAGTC | 1 cut(s) | 49 |
| Psp6I | CCWGG | 1 cut(s) | 467 |
| PspGI | CCWGG | 1 cut(s) | 467 |
| PspPI | GGNCC | 1 cut(s) | 47 |
| PsuI | RGATCY | 1 cut(s) | 488 |
| PvuI | CGATCG | 1 cut(s) | 550 |
| SapI | GCTCTTC | 1 cut(s) | 149 |
| SaqAI | TTAA | 1 cut(s) | 198 |
| SatI | GCNGC | 4 cut(s) | 24, 27, 282, 393 |
| Sau3AI | GATC | 3 cut(s) | 488, 547, 551 |
| Sau96I | GGNCC | 1 cut(s) | 47 |
| SchI | GAGTC | 1 cut(s) | 49 |
| ScrFI | CCNGG | 1 cut(s) | 469 |
| SfaNI | GCATC | 1 cut(s) | 137 |
| SfcI | CTRYAG | 1 cut(s) | 160 |
| SinI | GGWCC | 1 cut(s) | 47 |
| SpeI | ACTAGT | 1 cut(s) | 575 |
| Sse9I | AATT | 1 cut(s) | 208 |
| SsiI | CCGC | 2 cut(s) | 26, 150 |
| SspMI | CTAG | 2 cut(s) | 12, 576 |
| StyD4I | CCNGG | 1 cut(s) | 467 |
| StyI | CCWWGG | 4 cut(s) | 50, 103, 293, 387 |
| TaaI | ACNGT | 1 cut(s) | 586 |
| TaqI | TCGA | 1 cut(s) | 550 |
| TasI | AATT | 1 cut(s) | 208 |
| TauI | GCSGC | 1 cut(s) | 29 |
| TfiI | GAWTC | 2 cut(s) | 500, 521 |
| Tru1I | TTAA | 1 cut(s) | 198 |
| Tru9I | TTAA | 1 cut(s) | 198 |
| TscAI | CASTG | 1 cut(s) | 591 |
| TseI | GCWGC | 3 cut(s) | 23, 281, 392 |
| TspDTI | ATGAA | 1 cut(s) | 534 |
| TspRI | CASTG | 1 cut(s) | 591 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 429 |
| VpaK11BI | GGWCC | 1 cut(s) | 47 |
| XapI | RAATTY | 1 cut(s) | 208 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 254 |
| XspI | CTAG | 2 cut(s) | 12, 576 |
| Zsp2I | ATGCAT | 1 cut(s) | 519 |