Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000583

Physical Location & Seq

Genomic Coordinates Reverse (-)

30394311 .. 30396012

Gene Structure 1702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGAAGGCAATCTAATACTGTTGCATCTCCTGGAATAAGGAGAGGTCCATGGACTCCTCAGGAGGACAAGAAGCTCTTTGCTTTTGTTCAACAACATGGCCATGGAAGCTGGCGTTCCTTACCCCAGAAAGCTGGTCTCCAAAGATGTGGAAAGAGCTGCAGGCTAAGATGGAGAAACTATCTAAACCCTGACATTAAGAGAGGAAATATCAGTTTGCAGGAAGACCAGACCATCATTCTACTTCATGCACTTTTGGGCAACAGAACTACTGGAACACACAATGAGATAAAGAACTACTGGAACACACATCTAAAGAAGAGGTTGGCCAAGATAGGGTTTGATCCTGTAACCCACAAGCCCAAGACCGCCATCCTCGCCTCTGCTGATGGTGGCGACCCAAAGAACCTCTCAAACCTCAGCCACATAGCTCAGTGGGAAACTGATCGGCTTCAAGCCGAAGCTAGATTCTCCAGACAGTCAAAACTACTCATCAGTCATGACCAACCTCCTAGATTTGGACCCGTTCCTGTACCACAATGCCTTGACATGAATGAAAGAGCACGAGAAATTCGATTATTGTTAAAGTCAATATTAGCTGCAGACAGTGGTGCCCAATTAGGTGGTGGTATTGGTAGTACAGCCACCCACGTTGGGCAGGAGGTTGGTTCATTTGGTAAAGTTGATGTTGAAGGCTTGCTTACTAATTGTGATCAGTTTGAGGCTCCAAAAACCAGTACATCAGTTCTGGGTTTTGATGAAGTTTTTGGGGAGTCCGGTACTAATAATGACTACGGTGAACTGTTGGAGGCACTACTACAGCACAACCATAACAATACTGGATTTGAAGTTGGGGATGCTTGGAGTTTGGAACAACGTGAAACAGTAATGATGAGCAAGCCGGGAACAACGTACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

306

Amino Acids

33.88

Weight (kDa)

8.84

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	3.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 78	1.8e-12	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01140 AT3G01140 AT5G15310 AT5G15310 AT5G15310 AT5G15310
fragaria_vesca	FvH4_4g31000 FvH4_5g14660 FvH4_5g14661 FvH4_6g48110
malus_domestica	MD00G1081800.v1.1 MD06G1196400.v1.1 MD06G1196500.v1.1 MD09G1054000.v1.1 MD14G1203200.v1.1 MD16G1069000.v1.1 MD17G1051700.v1.1
prunus_persica	Prupe.1G278200_v2.0.a1 Prupe.3G264500_v2.0.a1 Prupe.5G196100_v2.0.a1 Prupe.5G196100_v2.0.a1
pyrus_communis	pycom06g17330 pycom06g17350 pycom111g04520 pycom14g16820 pycom17g04890
rosa_chinensis	RchiOBHm_Chr2g0167441 RchiOBHm_Chr3g0485421 RchiOBHm_Chr4g0439371 RchiOBHm_Chr7g0181801 RchiOBHm_Chr7g0181821
rosa_laevigata	RLG00000005171 RLG00000021717 RLG00000023151
rosa_multiflora	Rmu_co8449019.1_g000001 Rmu_sc0000168.1_g000002 Rmu_sc0001120.1_g000006 Rmu_sc0001206.1_g000043 Rmu_sc0004898.1_g000006 Rmu_sc0005291.1_g000001 Rmu_sc0009036.1_g000001 Rmu_sc0010132.1_g000030 Rmu_sc0014780.1_g000004 Rmu_sc0028983.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259110 Rroxscaffold_3G00271720 Rroxscaffold_5G00380300 Rroxscaffold_6G00397030
rosa_rugosa	Rorug02G0530400 Rorug03G0218000 Rorug04G0317800 Rorug06G0443600 Rorug06G0443700 Rorug06G0443900 Rorug06G0444100 Rorug06G0444300
rosa_samantha	Rh2AG597400 Rh2BG608800 Rh2CG579600 Rh2DG620000 Rh3AG267600 Rh3BG303000 Rh3DG296900 Rh3DG297800 Rh3DG298200 Rh4AG368900 Rh4BG380700 Rh4CG395200 Rh4DG375500 Rh7AG046200 Rh7AG046400 Rh7CG046500
rosa_wichuraiana	Rw2G049710 Rw3G023700 Rw3G023800 Rw3G023810 Rw3G023860 Rw3G023870 Rw4G031470 Rw7G003820 Rw7G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	611
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	2 cut(s)	100, 327
AcsI	RAATTY	1 cut(s)	570
AfaI	GTAC	5 cut(s)	534, 640, 739, 781, 914
AfiI	CCNNNNNNNGG	3 cut(s)	336, 518, 654
AgsI	TTSAA	4 cut(s)	92, 455, 692, 848
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	7 cut(s)	76, 111, 134, 159, 431, 464, 599
AluI	AGCT	7 cut(s)	76, 111, 134, 159, 431, 464, 599
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	2 cut(s)	100, 327
ApeKI	GCWGC	2 cut(s)	159, 599
ApoI	RAATTY	1 cut(s)	570
AspS9I	GGNCC	2 cut(s)	47, 521
AsuC2I	CCSGG	1 cut(s)	903
AsuHPI	GGTGA	1 cut(s)	809
AvaII	GGWCC	2 cut(s)	47, 521
AxyI	CCTNAGG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	616
BalI	TGGCCA	2 cut(s)	102, 329
BanI	GGYRCC	1 cut(s)	611
BauI	CACGAG	1 cut(s)	564
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	565
BbvCI	CCTCAGC	1 cut(s)	419
BbvI	GCAGC	2 cut(s)	146, 586
BccI	CCATC	4 cut(s)	165, 242, 380, 383
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	712
BcnI	CCSGG	1 cut(s)	903
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	2 cut(s)	465, 513
BfmI	CTRYAG	3 cut(s)	160, 600, 818
BisI	GCNGC	2 cut(s)	160, 600
BlsI	GCNGC	2 cut(s)	161, 601
Bme1390I	CCNGG	2 cut(s)	33, 903
Bme18I	GGWCC	2 cut(s)	47, 521
BmgT120I	GGNCC	2 cut(s)	47, 521
BmiI	GGNNCC	3 cut(s)	523, 613, 726
BmrFI	CCNGG	2 cut(s)	33, 903
BmsI	GCATC	2 cut(s)	35, 847
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	457
Bpu10I	CCTNAGC	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	903
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	50, 103
BsaWI	WCCGGW	1 cut(s)	776
Bsc4I	CCNNNNNNNGG	3 cut(s)	336, 518, 654
Bse1I	ACTGG	4 cut(s)	277, 305, 735, 844
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	50, 103
BseGI	GGATG	2 cut(s)	372, 862
BseLI	CCNNNNNNNGG	3 cut(s)	336, 518, 654
BseMII	CTCAG	3 cut(s)	74, 433, 446
BseNI	ACTGG	4 cut(s)	277, 305, 735, 844
BseRI	GAGGAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	2 cut(s)	146, 586
BshFI	GGCC	2 cut(s)	102, 329
BshNI	GGYRCC	1 cut(s)	611
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	2 cut(s)	777, 902
BslI	CCNNNNNNNGG	3 cut(s)	336, 518, 654
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	102, 329
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	565, 616
Bsp143I	GATC	3 cut(s)	343, 445, 712
Bsp19I	CCATGG	2 cut(s)	50, 103
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	2 cut(s)	102, 329
BspCNI	CTCAG	3 cut(s)	73, 432, 445
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	3 cut(s)	523, 613, 726
BspMAI	CTGCAG	2 cut(s)	164, 604
BspPI	GGATC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	143
BsrI	ACTGG	4 cut(s)	277, 305, 735, 844
BssECI	CCNNGG	2 cut(s)	50, 103
BssMI	GATC	3 cut(s)	343, 445, 712
BssSI	CACGAG	1 cut(s)	564
BssT1I	CCWWGG	2 cut(s)	50, 103
Bst2BI	CACGAG	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	6 cut(s)	22, 480, 608, 797, 804, 886
Bst6I	CTCTTC	1 cut(s)	314
BstC8I	GCNNGC	4 cut(s)	113, 164, 698, 899
BstDEI	CTNAG	4 cut(s)	60, 167, 419, 432
BstDSI	CCRYGG	2 cut(s)	50, 103
BstF5I	GGATG	2 cut(s)	372, 862
BstKTI	GATC	3 cut(s)	346, 448, 715
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	3 cut(s)	343, 445, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 377
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	31, 901
BstSFI	CTRYAG	3 cut(s)	160, 600, 818
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	2 cut(s)	146, 586
BstV2I	GAAGAC	1 cut(s)	231
BstXI	CCANNNNNNTGG	3 cut(s)	134, 149, 623
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	102, 329
BtgI	CCRYGG	2 cut(s)	50, 103
BtsCI	GGATG	2 cut(s)	372, 862
BtsIMutI	CAGTG	2 cut(s)	440, 613
Cac8I	GCNNGC	4 cut(s)	113, 164, 698, 899
CciI	TCATGA	1 cut(s)	499
Cfr13I	GGNCC	2 cut(s)	47, 521
Csp6I	GTAC	5 cut(s)	533, 639, 738, 780, 913
CspCI	CAANNNNNGTGG	2 cut(s)	634, 669
CviAII	CATG	6 cut(s)	51, 98, 104, 248, 500, 550
CviQI	GTAC	5 cut(s)	533, 639, 738, 780, 913
DdeI	CTNAG	4 cut(s)	60, 167, 419, 432
DpnI	GATC	3 cut(s)	345, 447, 714
DpnII	GATC	3 cut(s)	343, 445, 712
EaeI	YGGCCR	2 cut(s)	100, 327
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco130I	CCWWGG	2 cut(s)	50, 103
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	47, 521
Eco81I	CCTNAGG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	2 cut(s)	50, 103
ErhI	CCWWGG	2 cut(s)	50, 103
FaeI	CATG	6 cut(s)	54, 101, 107, 251, 503, 553
FaiI	YATR	8 cut(s)	52, 99, 105, 249, 428, 501, 551, 831
FalI	AAGNNNNNCTT	4 cut(s)	62, 94, 684, 716
FatI	CATG	6 cut(s)	50, 97, 103, 247, 499, 549
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	2 cut(s)	160, 600
FokI	GGATG	2 cut(s)	359, 869
Fsp4HI	GCNGC	2 cut(s)	160, 600
FspBI	CTAG	2 cut(s)	465, 513
GluI	GCNGC	2 cut(s)	160, 600
GsuI	CTGGAG	1 cut(s)	457
HaeIII	GGCC	2 cut(s)	102, 329
HapII	CCGG	2 cut(s)	777, 902
Hin1II	CATG	6 cut(s)	54, 101, 107, 251, 503, 553
HinfI	GANTC	3 cut(s)	55, 468, 773
HpaII	CCGG	2 cut(s)	777, 902
HphI	GGTGA	1 cut(s)	809
Hpy166II	GTNNAC	1 cut(s)	800
Hpy188III	TCNNGA	3 cut(s)	62, 474, 500
Hpy8I	GTNNAC	1 cut(s)	800
HpyAV	CCTTC	1 cut(s)	686
HpyCH4III	ACNGT	6 cut(s)	22, 480, 608, 797, 804, 886
HpyCH4IV	ACGT	3 cut(s)	651, 877, 911
HpyCH4V	TGCA	5 cut(s)	26, 162, 220, 251, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 377
HpyF3I	CTNAG	4 cut(s)	60, 167, 419, 432
HpySE526I	ACGT	3 cut(s)	651, 877, 911
Hsp92II	CATG	6 cut(s)	54, 101, 107, 251, 503, 553
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	3 cut(s)	343, 445, 712
LmnI	GCTCC	1 cut(s)	730
Lsp1109I	GCAGC	2 cut(s)	146, 586
LweI	GCATC	2 cut(s)	35, 847
MaeI	CTAG	2 cut(s)	465, 513
MaeII	ACGT	3 cut(s)	651, 877, 911
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	3 cut(s)	345, 447, 714
MboI	GATC	3 cut(s)	343, 445, 712
MboII	GAAGA	2 cut(s)	236, 331
MhlI	GDGCHC	2 cut(s)	565, 616
MlsI	TGGCCA	2 cut(s)	102, 329
MluCI	AATT	3 cut(s)	570, 617, 706
MluNI	TGGCCA	2 cut(s)	102, 329
MlyI	GAGTC	2 cut(s)	49, 782
MmeI	TCCRAC	1 cut(s)	786
Mox20I	TGGCCA	2 cut(s)	102, 329
MscI	TGGCCA	2 cut(s)	102, 329
MseI	TTAA	2 cut(s)	198, 584
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	2 cut(s)	102, 329
MspI	CCGG	2 cut(s)	777, 902
MspR9I	CCNGG	2 cut(s)	33, 903
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	108, 377
NciI	CCSGG	1 cut(s)	903
NcoI	CCATGG	2 cut(s)	50, 103
NdeII	GATC	3 cut(s)	343, 445, 712
NlaIII	CATG	6 cut(s)	54, 101, 107, 251, 503, 553
NlaIV	GGNNCC	3 cut(s)	523, 613, 726
PagI	TCATGA	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	468
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	161, 601
PleI	GAGTC	2 cut(s)	49, 781
PpsI	GAGTC	2 cut(s)	49, 781
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	3 cut(s)	523, 613, 726
PspPI	GGNCC	2 cut(s)	47, 521
PstI	CTGCAG	2 cut(s)	164, 604
RsaI	GTAC	5 cut(s)	534, 640, 739, 781, 914
RsaNI	GTAC	5 cut(s)	533, 639, 738, 780, 913
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	198, 584
SatI	GCNGC	2 cut(s)	160, 600
Sau3AI	GATC	3 cut(s)	343, 445, 712
Sau96I	GGNCC	2 cut(s)	47, 521
SchI	GAGTC	2 cut(s)	49, 782
ScrFI	CCNGG	2 cut(s)	33, 903
SduI	GDGCHC	2 cut(s)	565, 616
SfaNI	GCATC	2 cut(s)	35, 847
SfcI	CTRYAG	3 cut(s)	160, 600, 818
SinI	GGWCC	2 cut(s)	47, 521
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	3 cut(s)	570, 617, 706
SsiI	CCGC	1 cut(s)	369
SspI	AATATT	1 cut(s)	594
SspMI	CTAG	2 cut(s)	465, 513
StyD4I	CCNGG	2 cut(s)	31, 901
StyI	CCWWGG	2 cut(s)	50, 103
TaaI	ACNGT	6 cut(s)	22, 480, 608, 797, 804, 886
TaiI	ACGT	3 cut(s)	654, 880, 914
TaqI	TCGA	1 cut(s)	574
TasI	AATT	3 cut(s)	570, 617, 706
TatI	WGTACW	2 cut(s)	638, 737
TfiI	GAWTC	1 cut(s)	468
Tru1I	TTAA	2 cut(s)	198, 584
Tru9I	TTAA	2 cut(s)	198, 584
TscAI	CASTG	2 cut(s)	440, 613
TseI	GCWGC	2 cut(s)	159, 599
TspDTI	ATGAA	5 cut(s)	236, 566, 570, 660, 774
TspRI	CASTG	2 cut(s)	440, 613
VpaK11BI	GGWCC	2 cut(s)	47, 521
XapI	RAATTY	1 cut(s)	570
XcmI	CCANNNNNNNNNTGG	2 cut(s)	623, 836
XspI	CTAG	2 cut(s)	465, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.