Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Reverse (-)

17652659 .. 17655322

Gene Structure 2664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G191200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCAGAAATGTGAAATTATGCTGAATGATCTTATTGATTCTAAGAGGACTAACGGCAATATTAAAGCAACCATAACTCAGACATCTCAAGCAGGTTCTGAGCTGGGTGATAACGGGGTTTCCATGGATGTTTTTGATGCAACAATCATCTCTTCAAATTTCTGGCCCCAAATCCACGATGAGTGCCCTAATGTACCTGGACCTGTTGACCAACTACTATCTGATTATGCAAAGAGGTTTAATGAAATCAAGACCCCTCGTAAACTACTATGGAAGAAAAGTCTTGGTACGGTCAAGTTGGAGTTGCAATTTGAAGATAGAGCAGTGCAATTCGCGGTTGCTCCTGTGCATGCAGCAATTATAATGCAATTTCAAAATCAGACAAGCTGGACCTTTAAGAATCTTGCAGCTGCAATTGGTATTCCAACAGACATACTTAATCGCAGGATAAATTTCTGGATAAGCAAGGGAATTCTTGCAGAATCATTTGGGGCAGACTCTGAAGACCACGTGTTTCCATTAATGGAAGTTATGGTTGACAGTGGTAAAAAGGGTGGTACGAATGGAAGCATTGAGGATCTTATAGTTGCTGATGAAGAGGGGGAGAGCTCTGTAGCCTCTGTGGAGGATCAACTGCACAAGGAAATGACTCTGTATGAGAAATTTATCTTGGGGATGCTCACAAACTTTGGAAGCATGGCATTAGATCGAACTCATAATATTCTCAAGATGTTCTGCATAGCCGATCCTCCTTATGACAAAACTCTCCAACAGCTGCAAAGTTTCTTGATGGGTCTAGTTTCTGAAGAGAAGTTGGAACTAAGAGATGGAATGTATTTTTTGAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

284

Amino Acids

31.72

Weight (kDa)

4.98

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	83
AccII	CGCG	1 cut(s)	335
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	3 cut(s)	585, 636, 740
AcsI	RAATTY	4 cut(s)	157, 451, 471, 662
AcuI	CTGAAG	2 cut(s)	522, 825
AcvI	CACGTG	1 cut(s)	511
AfaI	GTAC	3 cut(s)	195, 289, 559
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	4 cut(s)	156, 314, 374, 844
AjnI	CCWGG	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	653, 685
AluBI	AGCT	5 cut(s)	103, 387, 410, 609, 775
AluI	AGCT	5 cut(s)	103, 387, 410, 609, 775
Alw21I	GWGCWC	1 cut(s)	611
AlwI	GGATC	3 cut(s)	585, 636, 740
AlwNI	CAGNNNCTG	2 cut(s)	98, 500
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	4 cut(s)	353, 407, 410, 775
ApoI	RAATTY	4 cut(s)	157, 451, 471, 662
AseI	ATTAAT	1 cut(s)	521
AspS9I	GGNCC	3 cut(s)	165, 200, 390
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	200, 390
BaeGI	GKGCMC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	611
BbrPI	CACGTG	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	611
BbvI	GCAGC	4 cut(s)	365, 397, 419, 762
BccI	CCATC	2 cut(s)	784, 821
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	198
BfaI	CTAG	1 cut(s)	797
BfmI	CTRYAG	1 cut(s)	612
BfuAI	ACCTGC	1 cut(s)	83
BisI	GCNGC	4 cut(s)	354, 408, 411, 776
BlsI	GCNGC	4 cut(s)	355, 409, 412, 777
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	2 cut(s)	200, 390
BmgT120I	GGNCC	3 cut(s)	165, 200, 390
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	2 cut(s)	127, 666
BpiI	GAAGAC	1 cut(s)	510
BpuEI	CTTGAG	2 cut(s)	72, 710
BsaAI	YACGTR	1 cut(s)	511
BsaJI	CCNNGG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	2 cut(s)	133, 681
BseMII	CTCAG	2 cut(s)	90, 92
BseSI	GKGCMC	1 cut(s)	188
BseXI	GCAGC	4 cut(s)	365, 397, 419, 762
BseYI	CCCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	620
Bsh1236I	CGCG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	611
BsnI	GGCC	1 cut(s)	166
Bsp1286I	GDGCHC	2 cut(s)	188, 611
Bsp143I	GATC	5 cut(s)	28, 577, 628, 706, 745
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	2 cut(s)	91, 91
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	1 cut(s)	167
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	3 cut(s)	585, 636, 740
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	5 cut(s)	28, 577, 628, 706, 745
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	292, 542
Bst6I	CTCTTC	3 cut(s)	157, 591, 801
BstBAI	YACGTR	1 cut(s)	511
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	4 cut(s)	42, 78, 99, 821
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	133, 681
BstFNI	CGCG	1 cut(s)	335
BstKTI	GATC	5 cut(s)	31, 580, 631, 709, 748
BstMBI	GATC	5 cut(s)	28, 577, 628, 706, 745
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	612
BstSLI	GKGCMC	1 cut(s)	188
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	4 cut(s)	365, 397, 419, 762
BstV2I	GAAGAC	1 cut(s)	510
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuRI	GGCC	1 cut(s)	166
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	133, 681
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	330, 547
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	351
CaiI	CAGNNNCTG	2 cut(s)	98, 500
Cfr13I	GGNCC	3 cut(s)	165, 200, 390
Csp6I	GTAC	3 cut(s)	194, 288, 558
CviAII	CATG	3 cut(s)	124, 350, 697
CviJI	RGCY	8 cut(s)	103, 166, 387, 410, 609, 617, 743, 775
CviKI_1	RGCY	8 cut(s)	103, 166, 387, 410, 609, 617, 743, 775
CviQI	GTAC	3 cut(s)	194, 288, 558
DdeI	CTNAG	4 cut(s)	42, 78, 99, 821
DpnI	GATC	5 cut(s)	30, 579, 630, 708, 747
DpnII	GATC	5 cut(s)	28, 577, 628, 706, 745
Eam1104I	CTCTTC	3 cut(s)	157, 591, 801
EarI	CTCTTC	3 cut(s)	157, 591, 801
Ecl136II	GAGCTC	1 cut(s)	609
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	611
Eco47I	GGWCC	2 cut(s)	200, 390
Eco53kI	GAGCTC	1 cut(s)	609
Eco57I	CTGAAG	2 cut(s)	522, 825
Eco72I	CACGTG	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	609
EcoRI	GAATTC	1 cut(s)	471
EcoRII	CCWGG	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	127, 353, 700
FatI	CATG	3 cut(s)	123, 349, 696
Fnu4HI	GCNGC	4 cut(s)	354, 408, 411, 776
FokI	GGATG	2 cut(s)	140, 688
FriOI	GRGCYC	1 cut(s)	611
Fsp4HI	GCNGC	4 cut(s)	354, 408, 411, 776
FspBI	CTAG	1 cut(s)	797
GluI	GCNGC	4 cut(s)	354, 408, 411, 776
GsaI	CCCAGC	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	166
Hin1II	CATG	3 cut(s)	127, 353, 700
HincII	GTYRAC	2 cut(s)	208, 538
HindII	GTYRAC	2 cut(s)	208, 538
HinfI	GANTC	5 cut(s)	38, 400, 482, 497, 649
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	3 cut(s)	208, 263, 538
Hpy188I	TCNGA	6 cut(s)	81, 100, 223, 381, 502, 805
Hpy188III	TCNNGA	4 cut(s)	250, 457, 727, 787
Hpy8I	GTNNAC	3 cut(s)	208, 263, 538
HpyCH4III	ACNGT	2 cut(s)	292, 542
HpyCH4IV	ACGT	1 cut(s)	510
HpyF3I	CTNAG	4 cut(s)	42, 78, 99, 821
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	3 cut(s)	127, 353, 700
Kzo9I	GATC	5 cut(s)	28, 577, 628, 706, 745
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	4 cut(s)	365, 397, 419, 762
LweI	GCATC	2 cut(s)	127, 666
MaeI	CTAG	1 cut(s)	797
MaeII	ACGT	1 cut(s)	510
MalI	GATC	5 cut(s)	30, 579, 630, 708, 747
MboI	GATC	5 cut(s)	28, 577, 628, 706, 745
MboII	GAAGA	6 cut(s)	144, 286, 326, 515, 608, 818
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	2 cut(s)	188, 611
MlyI	GAGTC	2 cut(s)	491, 643
MmeI	TCCRAC	4 cut(s)	279, 449, 793, 795
MnlI	CCTC	8 cut(s)	39, 228, 267, 568, 592, 619, 628, 759
MseI	TTAA	5 cut(s)	63, 240, 396, 438, 521
MspA1I	CMGCKG	2 cut(s)	410, 775
MspR9I	CCNGG	1 cut(s)	198
MunI	CAATTG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	335
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	5 cut(s)	28, 577, 628, 706, 745
NlaIII	CATG	3 cut(s)	127, 353, 700
NlaIV	GGNNCC	1 cut(s)	167
NspI	RCATGY	1 cut(s)	353
PaeI	GCATGC	1 cut(s)	353
PfeI	GAWTC	3 cut(s)	38, 400, 482
PkrI	GCNGC	4 cut(s)	355, 409, 412, 777
PleI	GAGTC	2 cut(s)	491, 643
PmaCI	CACGTG	1 cut(s)	511
PmlI	CACGTG	1 cut(s)	511
PpsI	GAGTC	2 cut(s)	491, 643
Ppu21I	YACGTR	1 cut(s)	511
PshBI	ATTAAT	1 cut(s)	521
PsiI	TTATAA	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	611
Psp6I	CCWGG	1 cut(s)	196
PspCI	CACGTG	1 cut(s)	511
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	3 cut(s)	165, 200, 390
PstNI	CAGNNNCTG	2 cut(s)	98, 500
PsuI	RGATCY	1 cut(s)	577
PvuII	CAGCTG	2 cut(s)	410, 775
RsaI	GTAC	3 cut(s)	195, 289, 559
RsaNI	GTAC	3 cut(s)	194, 288, 558
SacI	GAGCTC	1 cut(s)	611
SaqAI	TTAA	5 cut(s)	63, 240, 396, 438, 521
SatI	GCNGC	4 cut(s)	354, 408, 411, 776
Sau3AI	GATC	5 cut(s)	28, 577, 628, 706, 745
Sau96I	GGNCC	3 cut(s)	165, 200, 390
SchI	GAGTC	2 cut(s)	491, 643
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	2 cut(s)	188, 611
SfaNI	GCATC	2 cut(s)	127, 666
SfcI	CTRYAG	1 cut(s)	612
SinI	GGWCC	2 cut(s)	200, 390
SmlI	CTYRAG	2 cut(s)	87, 725
SmoI	CTYRAG	2 cut(s)	87, 725
SphI	GCATGC	1 cut(s)	353
SsiI	CCGC	1 cut(s)	335
SspI	AATATT	2 cut(s)	61, 721
SspMI	CTAG	1 cut(s)	797
SstI	GAGCTC	1 cut(s)	611
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	292, 542
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	1 cut(s)	709
TfiI	GAWTC	3 cut(s)	38, 400, 482
Tru1I	TTAA	5 cut(s)	63, 240, 396, 438, 521
Tru9I	TTAA	5 cut(s)	63, 240, 396, 438, 521
TscAI	CASTG	2 cut(s)	330, 547
TseI	GCWGC	4 cut(s)	353, 407, 410, 775
TspDTI	ATGAA	2 cut(s)	258, 609
TspRI	CASTG	2 cut(s)	330, 547
VpaK11BI	GGWCC	2 cut(s)	200, 390
VspI	ATTAAT	1 cut(s)	521
XapI	RAATTY	4 cut(s)	157, 451, 471, 662
XceI	RCATGY	1 cut(s)	353
XspI	CTAG	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.