Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Forward (+)

60535565 .. 60541628

Gene Structure 6064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2727 bp

ATGGCGGATTCGATTTCATCAACCTGCAATCTAGGGTTTCTCCACACACTCAGCGAAACCTCCATCCACGAAATCGTCGAAAGCTACTCCGCCTTCTGCGCCGCCACCGAAACCCTCCTCAACGGCGCCGGAGACCTCTCGGTGGGCCCGCAACTCGTCTCCCACGTCCACCGCCTCTGCAGCCACGGCCTCGAGTCTCTCGTCCGCGACCACTTCCTCGGCTCGCTCGAGAGAACCTTCGAGAAAAACGGCGCCTCCAAATTCTGGCGGCATTTCGAGGCACACGACGACGTTTCGATCGGAGAGCAAGTGTTCTACAACGCCTTGGAGGAAATCTCACTGGAAAAGCAGTACCAGGAGAAGTGCTTGCTGATGCTGGTTCATGCTTTACAGACTTATGGAGGAAGAAGAAGAAGCCCTGATTCCGATGACGTCAGCCCGGAGCTCTTTGCTAAGTATCAATTATCAGTGTCCTCGGTTCTTATGGCCACTCTTCCTCGGCAATTTCCAGAGATACTCAACTGGTATTTTAAGGGAAGGTTGGAGGAACTGAGTACTATAATGGCCGGAGACGAGCCTCGTGGCGATGAGGATGAAGATGATAGGGATGATATGGAGCTGGATGAGAAATGCAGAGTGTCATACAGGAGTGGCCAAATGGAGATTGATGAATGTTATCCCCAGGGGAGGTTCTTTGATAATAATAAATTGGTCAACAACATAGGGCGGGTTGTACATGATTTGAGGAGTCTTGGATTTACATCTATGACTGAAGATGCATATGCATCTGCTATCTTTTTGTTTCTTAAGGACAAAGTTCATGACCTTGCTGGTGATGATTATCGGATTTCTGTTTTGGAGTCTATTAAGAGGTGGATACAGGCTGTGCCTCTTCAGTTCTTGCATGCTCTACTTGCTTATCTTGGTGATTCTGTTAGTTATGAAAGTGCATCATCCGGTCTCAAGTCACCTTTGGCTAAATGCCCTGCTTCATTCTATCCTGGAATCGATACTCCATCTGAAGGTCTTGTAAGATGGCAGTTGCGACTGGAGTATTTTGCTTATGAAACATTGCAAGATTTGAGAATAGCAAAATTATTTGAGATTATTGTGGATTATCCTGACAGCTCTCCTGCGATTGAAGATTTGAAACAGTGTCTTGAATACACTGGACAACATTCTAAGCTTGTGGAGTCATTTATTTCAGCACTGCAGTACCGGTTGCTCACTGCAGGTGCCTCAACAAATGACATTTTGCATCAATATGTTTCAACAATTAAGGCACTCCGGACAATAGATCCAGCAGGTGTTTTCCTTGAAGCAGTCGGTGAGCCAATAAGGGACTATTTAAGGGGAAGGAAAGACACCATAAAGTGCATTGTGACCATGCTTACCGACGGGACTGGTGCAAATTCTAATGTATCCGGAAACACCGGCGATAGCCTTCTTGAAGAATTAAATAGAGATGAAGAAAGCCAAGAGAACATTGCTCCTGAAGATGACTTTCATACTGATGATAAGCAAGCTTGGATAAATGCTTCACGCTGGGAGCCTGACCCTGTAGAAGCTGACCCCTTGAAAGGTAGCAGGAACCGAAGGAAGGTTGACATACTTGGAATGATTGTTGGCATAATTGGTTCACAAGACCAACTTGTTAATGAATACCGTGTTATGCTGGCCGAAAAGCTTCTCAACAAATCTGATTATGACATTGATTCAGAGATACGTACTCTTGAACTCCTCAAGGCAAGTGGTTATTTGTTTAATTGGATACATTTTGGAGAGAACAGCATGCAGAAATGTGAAATTATGCTCAATGATCTGATTGGTTCTAAGAGGACCAACACTAATATTAAAGCAACCATAGCTCAGCCATCTCATACAGATGCAGGCGGTGAGCTGGGGGATAACAGGGTATCCATGGATATTCTTGATGCTACAATTATCTCTTCAAATTTTTGGCCTCCAATCCAGGAGGAGTCCCTAAATGTACCTGGGCCTGTTGACCAACTACTCTCTGATTATGCAAAGAGATTTAATGAAATCAAGACCCCTCGTAAGCTATTGTGGAAGAAGAATCTTGGTACCGTCAAGTTGGAATTGCAATTTGAAGATAGAGAAATGCAGTTCATGGTTGCTCCTCTTCATGCAGCAATCATAATGCAATTTCAAGATCAGAAAAGCTGGACCTCCAAAGATCTTGCAGCTGCAGTTGGGGTTCCAATAGATATACTTAATCGGAGGATCAATTTTTGGATAAGCAAGGGAATTCTTGCAGAATCACTTGGGGAAGACACTGATGACCATGTGTTTACACTAATGGAAGGGATGATTGACACTGGCAAAAACACTGCTAATGATGGGAACTGCGAGGATCTTATAGTTGGTGATGAGGAAGGAGAGAGCTCTGTAGCCTCTGTAGAGGATCAACTGCGCAAGGAAATGACTGTGTATGAGAAATTTATTTTGGGGATGCTCACAAACTTTGGAAGCATGGCTTTGGATCGTATTCATAATACTCTCAAGATGTTCTGCATAGCTGATCCTACTTATGACAAAACCCTCCAACAGCTGCAAAGTTTCTTATCAGGTCAAGATGCAGAAGAATTGCCTATAGGAGAGATTGCTAAATATTGCAGTGAGATGGAGAGGTTTATGGAAGACATGCCTGAAACTCTGGATTGCAGGGAGATTAGACTAGAGAAAACTGTTCCAAGTATAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

908

Amino Acids

102.44

Weight (kDa)

4.71

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_ANAPC2	PF25773	345 - 453	1e-41	ANAPC2-like, TPR repeats
Cullin_AB	PF26557	648 - 761	1e-14	Cullin alpha+beta domain
ANAPC2	PF08672	821 - 868	1.8e-16	Anaphase promoting complex (APC) subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1223, 1295
AatII	GACGTC	1 cut(s)	435
Acc16I	TGCGCA	1 cut(s)	2435
Acc36I	ACCTGC	3 cut(s)	32, 1223, 1295
Acc65I	GGTACC	1 cut(s)	2084
AccB1I	GGYRCC	4 cut(s)	125, 251, 1235, 2084
AccB7I	CCANNNNNTGG	1 cut(s)	264
AccII	CGCG	1 cut(s)	207
AccIII	TCCGGA	2 cut(s)	1287, 1424
AciI	CCGC	9 cut(s)	5, 90, 102, 149, 172, 205, 268, 727, 1893
AclWI	GGATC	6 cut(s)	1292, 2252, 2382, 2433, 2511, 2537
AcoI	YGGCCR	4 cut(s)	486, 564, 652, 1677
AcsI	RAATTY	5 cut(s)	260, 1411, 1954, 2268, 2459
AcuI	CTGAAG	4 cut(s)	792, 878, 1041, 1515
AcyI	GRCGYC	3 cut(s)	126, 252, 432
AfaI	GTAC	7 cut(s)	353, 556, 735, 1217, 1729, 1992, 2086
AfiI	CCNNNNNNNGG	6 cut(s)	142, 264, 687, 1022, 1580, 1600
AflII	CTTAAG	1 cut(s)	806
AgeI	ACCGGT	1 cut(s)	1218
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	5 cut(s)	354, 681, 1000, 1971, 1993
AjuI	GAANNNNNNNTTGG	2 cut(s)	2450, 2482
Alw21I	GWGCWC	2 cut(s)	447, 2408
Alw26I	GTCTC	5 cut(s)	126, 163, 201, 564, 965
AlwI	GGATC	6 cut(s)	1292, 2252, 2382, 2433, 2511, 2537
Ama87I	CYCGRG	2 cut(s)	191, 227
Aor13HI	TCCGGA	2 cut(s)	1287, 1424
AoxI	GGCC	8 cut(s)	145, 187, 486, 564, 652, 1677, 1961, 1997
ApaI	GGGCCC	1 cut(s)	149
ApeKI	GCWGC	5 cut(s)	180, 2150, 2204, 2207, 2572
ApoI	RAATTY	5 cut(s)	260, 1411, 1954, 2268, 2459
AsiGI	ACCGGT	1 cut(s)	1218
Asp700I	GAANNNNTTC	1 cut(s)	1686
Asp718I	GGTACC	1 cut(s)	2084
AspLEI	GCGC	4 cut(s)	101, 128, 254, 2436
AspS9I	GGNCC	5 cut(s)	145, 146, 1839, 1997, 2187
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	6 cut(s)	845, 938, 960, 1340, 1907, 2399
AvaI	CYCGRG	2 cut(s)	191, 227
AvaII	GGWCC	2 cut(s)	1839, 2187
BaeGI	GKGCMC	1 cut(s)	149
BaeI	ACNNNNGTAYC	2 cut(s)	1199, 1232
BalI	TGGCCA	2 cut(s)	488, 654
BanI	GGYRCC	4 cut(s)	125, 251, 1235, 2084
BanII	GRGCYC	3 cut(s)	149, 447, 2408
BauI	CACGAG	1 cut(s)	579
BbsI	GAAGAC	2 cut(s)	2298, 2667
Bbv12I	GWGCWC	2 cut(s)	447, 2408
BbvI	GCAGC	5 cut(s)	192, 2162, 2194, 2216, 2559
BccI	CCATC	6 cut(s)	71, 1024, 1029, 1882, 2354, 2638
BceAI	ACGGC	3 cut(s)	139, 202, 265
BciT130I	CCWGG	5 cut(s)	356, 683, 1002, 1973, 1995
BciVI	GTATCC	4 cut(s)	870, 1432, 1764, 1927
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	5 cut(s)	126, 163, 201, 564, 965
BfaI	CTAG	2 cut(s)	32, 2699
BfmI	CTRYAG	8 cut(s)	178, 1211, 1230, 1560, 2208, 2409, 2418, 2613
BfoI	RGCGCY	2 cut(s)	129, 255
BfrI	CTTAAG	1 cut(s)	806
BfuAI	ACCTGC	3 cut(s)	32, 1223, 1295
BfuI	GTATCC	4 cut(s)	870, 1432, 1764, 1927
BglII	AGATCT	1 cut(s)	2197
BisI	GCNGC	7 cut(s)	102, 181, 269, 2151, 2205, 2208, 2573
BlpI	GCTNAGC	1 cut(s)	1869
BlsI	GCNGC	7 cut(s)	103, 182, 270, 2152, 2206, 2209, 2574
BmcAI	AGTACT	1 cut(s)	556
Bme1390I	CCNGG	6 cut(s)	356, 440, 683, 1002, 1973, 1995
Bme18I	GGWCC	2 cut(s)	1839, 2187
BmeT110I	CYCGRG	2 cut(s)	191, 227
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	5 cut(s)	145, 146, 1839, 1997, 2187
BmiI	GGNNCC	8 cut(s)	127, 147, 253, 1237, 1551, 1592, 2086, 2220
BmrFI	CCNGG	6 cut(s)	356, 440, 683, 1002, 1973, 1995
BmsI	GCATC	9 cut(s)	363, 766, 794, 959, 1267, 1876, 1924, 2463, 2587
BpiI	GAAGAC	2 cut(s)	2298, 2667
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpmI	CTGGAG	1 cut(s)	1070
Bpu1102I	GCTNAGC	1 cut(s)	1869
BpuEI	CTTGAG	3 cut(s)	947, 1727, 2507
BpuMI	CCSGG	1 cut(s)	440
Bsa29I	ATCGAT	1 cut(s)	1008
BsaAI	YACGTR	1 cut(s)	1727
BsaBI	GATNNNNATC	2 cut(s)	760, 840
BsaHI	GRCGYC	3 cut(s)	126, 252, 432
BsaI	GGTCTC	2 cut(s)	126, 965
BsaJI	CCNNGG	9 cut(s)	184, 217, 324, 474, 497, 681, 682, 1920, 1994
BsaWI	WCCGGW	4 cut(s)	956, 1218, 1287, 1424
BsaXI	ACNNNNNCTCC	4 cut(s)	239, 269, 294, 324
Bsc4I	CCNNNNNNNGG	6 cut(s)	142, 264, 687, 1022, 1580, 1600
Bse118I	RCCGGY	2 cut(s)	1218, 1433
Bse1I	ACTGG	6 cut(s)	345, 527, 1053, 1174, 1408, 2344
Bse3DI	GCAATG	2 cut(s)	1070, 1485
Bse8I	GATNNNNATC	2 cut(s)	760, 840
BseAI	TCCGGA	2 cut(s)	1287, 1424
BseBI	CCWGG	5 cut(s)	356, 683, 1002, 1973, 1995
BseCI	ATCGAT	1 cut(s)	1008
BseDI	CCNNGG	9 cut(s)	184, 217, 324, 474, 497, 681, 682, 1920, 1994
BseGI	GGATG	7 cut(s)	63, 598, 613, 628, 953, 2334, 2478
BseJI	GATNNNNATC	2 cut(s)	760, 840
BseLI	CCNNNNNNNGG	6 cut(s)	142, 264, 687, 1022, 1580, 1600
BseMI	GCAATG	2 cut(s)	1070, 1485
BseMII	CTCAG	3 cut(s)	64, 542, 1883
BseNI	ACTGG	6 cut(s)	345, 527, 1053, 1174, 1408, 2344
BseRI	GAGGAG	5 cut(s)	107, 760, 1730, 1991, 2130
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	5 cut(s)	192, 2162, 2194, 2216, 2559
BseYI	CCCAGC	2 cut(s)	1545, 1900
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	8 cut(s)	147, 189, 488, 566, 654, 1679, 1963, 1999
BshNI	GGYRCC	4 cut(s)	125, 251, 1235, 2084
BshTI	ACCGGT	1 cut(s)	1218
BshVI	ATCGAT	1 cut(s)	1008
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	2 cut(s)	447, 2408
BsiHKCI	CYCGRG	2 cut(s)	191, 227
BsiSI	CCGG	8 cut(s)	129, 440, 567, 957, 1219, 1288, 1425, 1434
BslFI	GGGAC	3 cut(s)	1355, 1414, 1966
BslI	CCNNNNNNNGG	6 cut(s)	142, 264, 687, 1022, 1580, 1600
BsmAI	GTCTC	5 cut(s)	126, 163, 201, 564, 965
BsmBI	CGTCTC	2 cut(s)	163, 564
BsmFI	GGGAC	3 cut(s)	1355, 1414, 1966
BsnI	GGCC	8 cut(s)	147, 189, 488, 566, 654, 1679, 1963, 1999
Bso31I	GGTCTC	2 cut(s)	126, 965
BsoBI	CYCGRG	2 cut(s)	191, 227
Bsp120I	GGGCCC	1 cut(s)	145
Bsp1286I	GDGCHC	3 cut(s)	149, 447, 2408
Bsp13I	TCCGGA	2 cut(s)	1287, 1424
Bsp1407I	TGTACA	1 cut(s)	733
Bsp1720I	GCTNAGC	1 cut(s)	1869
Bsp19I	CCATGG	1 cut(s)	1920
BspACI	CCGC	9 cut(s)	5, 90, 102, 149, 172, 205, 268, 727, 1893
BspANI	GGCC	8 cut(s)	147, 189, 488, 566, 654, 1679, 1963, 1999
BspCNI	CTCAG	3 cut(s)	63, 543, 1882
BspDI	ATCGAT	1 cut(s)	1008
BspEI	TCCGGA	2 cut(s)	1287, 1424
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	820
BspLI	GGNNCC	8 cut(s)	127, 147, 253, 1237, 1551, 1592, 2086, 2220
BspMAI	CTGCAG	4 cut(s)	182, 1215, 1234, 2212
BspMI	ACCTGC	3 cut(s)	32, 1223, 1295
BspPI	GGATC	6 cut(s)	1292, 2252, 2382, 2433, 2511, 2537
BspT107I	GGYRCC	4 cut(s)	125, 251, 1235, 2084
BspTI	CTTAAG	1 cut(s)	806
BspTNI	GGTCTC	2 cut(s)	126, 965
BsrDI	GCAATG	2 cut(s)	1070, 1485
BsrFI	RCCGGY	2 cut(s)	1218, 1433
BsrGI	TGTACA	1 cut(s)	733
BsrI	ACTGG	6 cut(s)	345, 527, 1053, 1174, 1408, 2344
BssAI	RCCGGY	2 cut(s)	1218, 1433
BssECI	CCNNGG	9 cut(s)	184, 217, 324, 474, 497, 681, 682, 1920, 1994
BssNI	GRCGYC	3 cut(s)	126, 252, 432
BssSI	CACGAG	1 cut(s)	579
BssT1I	CCWWGG	2 cut(s)	324, 1920
Bst2BI	CACGAG	1 cut(s)	579
Bst2UI	CCWGG	5 cut(s)	356, 683, 1002, 1973, 1995
Bst4CI	ACNGT	5 cut(s)	1155, 1667, 2089, 2449, 2710
Bst6I	CTCTTC	4 cut(s)	498, 897, 1954, 2148
BstACI	GRCGYC	3 cut(s)	126, 252, 432
BstAFI	CTTAAG	1 cut(s)	806
BstAUI	TGTACA	1 cut(s)	733
BstBAI	YACGTR	1 cut(s)	1727
BstC8I	GCNNGC	8 cut(s)	149, 224, 368, 906, 1524, 1677, 1793, 1891
BstDEI	CTNAG	6 cut(s)	50, 453, 551, 1182, 1833, 1869
BstDSI	CCRYGG	2 cut(s)	184, 1920
BstF5I	GGATG	7 cut(s)	63, 598, 613, 628, 953, 2334, 2478
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	2 cut(s)	129, 255
BstHHI	GCGC	4 cut(s)	101, 128, 254, 2436
BstMAI	GTCTC	5 cut(s)	126, 163, 201, 564, 965
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 180, 186, 914, 1865
BstNI	CCWGG	5 cut(s)	356, 683, 1002, 1973, 1995
BstNSI	RCATGY	3 cut(s)	908, 1795, 2668
BstSCI	CCNGG	6 cut(s)	354, 438, 681, 1000, 1971, 1993
BstSFI	CTRYAG	8 cut(s)	178, 1211, 1230, 1560, 2208, 2409, 2418, 2613
BstSLI	GKGCMC	1 cut(s)	149
BstSNI	TACGTA	1 cut(s)	1727
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	5 cut(s)	192, 2162, 2194, 2216, 2559
BstV2I	GAAGAC	2 cut(s)	2298, 2667
BstX2I	RGATCY	3 cut(s)	1297, 2197, 2374
BstYI	RGATCY	3 cut(s)	1297, 2197, 2374
Bsu15I	ATCGAT	1 cut(s)	1008
BsuI	GTATCC	4 cut(s)	870, 1432, 1764, 1927
BsuRI	GGCC	8 cut(s)	147, 189, 488, 566, 654, 1679, 1963, 1999
BsuTUI	ATCGAT	1 cut(s)	1008
BtgI	CCRYGG	2 cut(s)	184, 1920
BtgZI	GCGATG	1 cut(s)	600
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	7 cut(s)	63, 598, 613, 628, 953, 2334, 2478
BtsI	GCAGTG	4 cut(s)	1208, 1227, 2349, 2644
BveI	ACCTGC	3 cut(s)	32, 1223, 1295
Cac8I	GCNNGC	8 cut(s)	149, 224, 368, 906, 1524, 1677, 1793, 1891
CciI	TCATGA	1 cut(s)	820
CfoI	GCGC	4 cut(s)	101, 128, 254, 2436
Cfr10I	RCCGGY	2 cut(s)	1218, 1433
Cfr13I	GGNCC	5 cut(s)	145, 146, 1839, 1997, 2187
ClaI	ATCGAT	1 cut(s)	1008
Csp6I	GTAC	7 cut(s)	352, 555, 734, 1216, 1728, 1991, 2085
CspAI	ACCGGT	1 cut(s)	1218
CspCI	CAANNNNNGTGG	2 cut(s)	1732, 1767
CviQI	GTAC	7 cut(s)	352, 555, 734, 1216, 1728, 1991, 2085
DdeI	CTNAG	6 cut(s)	50, 453, 551, 1182, 1833, 1869
DinI	GGCGCC	2 cut(s)	127, 253
EaeI	YGGCCR	4 cut(s)	486, 564, 652, 1677
Eam1104I	CTCTTC	4 cut(s)	498, 897, 1954, 2148
EarI	CTCTTC	4 cut(s)	498, 897, 1954, 2148
EciI	GGCGGA	2 cut(s)	20, 79
Ecl136II	GAGCTC	2 cut(s)	445, 2406
Eco105I	TACGTA	1 cut(s)	1727
Eco130I	CCWWGG	2 cut(s)	324, 1920
Eco24I	GRGCYC	3 cut(s)	149, 447, 2408
Eco31I	GGTCTC	2 cut(s)	126, 965
Eco47I	GGWCC	2 cut(s)	1839, 2187
Eco53kI	GAGCTC	2 cut(s)	445, 2406
Eco57I	CTGAAG	4 cut(s)	792, 878, 1041, 1515
Eco88I	CYCGRG	2 cut(s)	191, 227
EcoICRI	GAGCTC	2 cut(s)	445, 2406
EcoRI	GAATTC	1 cut(s)	2268
EcoRII	CCWGG	5 cut(s)	354, 681, 1000, 1971, 1993
EcoT14I	CCWWGG	2 cut(s)	324, 1920
EcoT22I	ATGCAT	2 cut(s)	781, 787
EcoT38I	GRGCYC	3 cut(s)	149, 447, 2408
EgeI	GGCGCC	2 cut(s)	127, 253
EheI	GGCGCC	2 cut(s)	127, 253
ErhI	CCWWGG	2 cut(s)	324, 1920
Esp3I	CGTCTC	2 cut(s)	163, 564
FalI	AAGNNNNNCTT	4 cut(s)	1635, 1667, 2482, 2514
FaqI	GGGAC	3 cut(s)	1355, 1414, 1966
FauI	CCCGC	2 cut(s)	156, 720
FauNDI	CATATG	1 cut(s)	781
Fnu4HI	GCNGC	7 cut(s)	102, 181, 269, 2151, 2205, 2208, 2573
FokI	GGATG	7 cut(s)	50, 605, 620, 635, 940, 2341, 2485
FriOI	GRGCYC	3 cut(s)	149, 447, 2408
Fsp4HI	GCNGC	7 cut(s)	102, 181, 269, 2151, 2205, 2208, 2573
FspBI	CTAG	2 cut(s)	32, 2699
FspI	TGCGCA	1 cut(s)	2435
GlaI	GCGC	4 cut(s)	100, 127, 253, 2435
GluI	GCNGC	7 cut(s)	102, 181, 269, 2151, 2205, 2208, 2573
GsaI	CCCAGC	2 cut(s)	1549, 1904
GsuI	CTGGAG	1 cut(s)	1070
HaeII	RGCGCY	2 cut(s)	129, 255
HaeIII	GGCC	8 cut(s)	147, 189, 488, 566, 654, 1679, 1963, 1999
HapII	CCGG	8 cut(s)	129, 440, 567, 957, 1219, 1288, 1425, 1434
HhaI	GCGC	4 cut(s)	101, 128, 254, 2436
Hin1I	GRCGYC	3 cut(s)	126, 252, 432
Hin6I	GCGC	4 cut(s)	99, 126, 252, 2434
HinP1I	GCGC	4 cut(s)	99, 126, 252, 2434
HincII	GTYRAC	3 cut(s)	715, 1606, 2005
HindII	GTYRAC	3 cut(s)	715, 1606, 2005
HindIII	AAGCTT	3 cut(s)	1184, 1524, 1685
HpaII	CCGG	8 cut(s)	129, 440, 567, 957, 1219, 1288, 1425, 1434
HphI	GGTGA	6 cut(s)	845, 938, 960, 1340, 1907, 2399
Hpy166II	GTNNAC	6 cut(s)	169, 715, 1606, 1640, 2005, 2313
Hpy8I	GTNNAC	6 cut(s)	169, 715, 1606, 1640, 2005, 2313
Hpy99I	CGWCG	4 cut(s)	80, 290, 293, 1400
HpyCH4III	ACNGT	5 cut(s)	1155, 1667, 2089, 2449, 2710
HpyCH4IV	ACGT	4 cut(s)	165, 291, 432, 1726
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 180, 186, 914, 1865
HpyF3I	CTNAG	6 cut(s)	50, 453, 551, 1182, 1833, 1869
HpySE526I	ACGT	4 cut(s)	165, 291, 432, 1726
Hsp92I	GRCGYC	3 cut(s)	126, 252, 432
HspAI	GCGC	4 cut(s)	99, 126, 252, 2434
KasI	GGCGCC	2 cut(s)	125, 251
Kpn2I	TCCGGA	2 cut(s)	1287, 1424
KpnI	GGTACC	1 cut(s)	2088
LmnI	GCTCC	5 cut(s)	442, 616, 1495, 1549, 2143
Lsp1109I	GCAGC	5 cut(s)	192, 2162, 2194, 2216, 2559
LweI	GCATC	9 cut(s)	363, 766, 794, 959, 1267, 1876, 1924, 2463, 2587
MaeI	CTAG	2 cut(s)	32, 2699
MaeII	ACGT	4 cut(s)	165, 291, 432, 1726
MaeIII	GTNAC	2 cut(s)	966, 1381
MflI	RGATCY	3 cut(s)	1297, 2197, 2374
MhlI	GDGCHC	3 cut(s)	149, 447, 2408
MlsI	TGGCCA	2 cut(s)	488, 654
MluNI	TGGCCA	2 cut(s)	488, 654
Mly113I	GGCGCC	2 cut(s)	126, 252
MlyI	GAGTC	5 cut(s)	203, 757, 869, 1202, 1988
MmeI	TCCRAC	3 cut(s)	522, 2076, 2590
Mox20I	TGGCCA	2 cut(s)	488, 654
Mph1103I	ATGCAT	2 cut(s)	781, 787
MroI	TCCGGA	2 cut(s)	1287, 1424
MroXI	GAANNNNTTC	1 cut(s)	1686
MscI	TGGCCA	2 cut(s)	488, 654
MslI	CAYNNNNRTG	3 cut(s)	1263, 1512, 1884
Msp20I	TGGCCA	2 cut(s)	488, 654
MspA1I	CMGCKG	2 cut(s)	2207, 2572
MspCI	CTTAAG	1 cut(s)	806
MspI	CCGG	8 cut(s)	129, 440, 567, 957, 1219, 1288, 1425, 1434
MspR9I	CCNGG	6 cut(s)	356, 440, 683, 1002, 1973, 1995
MvaI	CCWGG	5 cut(s)	356, 683, 1002, 1973, 1995
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	5 cut(s)	98, 180, 186, 914, 1865
NarI	GGCGCC	2 cut(s)	126, 252
NciI	CCSGG	1 cut(s)	440
NcoI	CCATGG	1 cut(s)	1920
NdeI	CATATG	1 cut(s)	781
NlaIV	GGNNCC	8 cut(s)	127, 147, 253, 1237, 1551, 1592, 2086, 2220
NmeAIII	GCCGAG	2 cut(s)	198, 478
NmuCI	GTSAC	2 cut(s)	966, 1381
NsbI	TGCGCA	1 cut(s)	2435
NsiI	ATGCAT	2 cut(s)	781, 787
NspI	RCATGY	3 cut(s)	908, 1795, 2668
PaeI	GCATGC	2 cut(s)	908, 1795
PaeR7I	CTCGAG	2 cut(s)	191, 227
PagI	TCATGA	1 cut(s)	820
PaqCI	CACCTGC	2 cut(s)	1223, 1295
PasI	CCCWGGG	1 cut(s)	682
PcsI	WCGNNNNNNNCGW	5 cut(s)	75, 162, 198, 225, 282
PdmI	GAANNNNTTC	1 cut(s)	1686
PfeI	GAWTC	7 cut(s)	8, 422, 929, 1005, 1715, 2077, 2279
PflMI	CCANNNNNTGG	1 cut(s)	264
PfoI	TCCNGGA	2 cut(s)	1000, 1971
PinAI	ACCGGT	1 cut(s)	1218
PkrI	GCNGC	7 cut(s)	103, 182, 270, 2152, 2206, 2209, 2574
Ple19I	CGATCG	1 cut(s)	300
PleI	GAGTC	5 cut(s)	202, 756, 868, 1201, 1987
PluTI	GGCGCC	2 cut(s)	129, 255
PpsI	GAGTC	5 cut(s)	202, 756, 868, 1201, 1987
Ppu21I	YACGTR	1 cut(s)	1727
Psp124BI	GAGCTC	2 cut(s)	447, 2408
Psp6I	CCWGG	5 cut(s)	354, 681, 1000, 1971, 1993
PspFI	CCCAGC	2 cut(s)	1545, 1900
PspGI	CCWGG	5 cut(s)	354, 681, 1000, 1971, 1993
PspN4I	GGNNCC	8 cut(s)	127, 147, 253, 1237, 1551, 1592, 2086, 2220
PspOMI	GGGCCC	1 cut(s)	145
PspPI	GGNCC	5 cut(s)	145, 146, 1839, 1997, 2187
PspXI	VCTCGAGB	1 cut(s)	191
PstI	CTGCAG	4 cut(s)	182, 1215, 1234, 2212
PsuI	RGATCY	3 cut(s)	1297, 2197, 2374
PvuI	CGATCG	1 cut(s)	300
PvuII	CAGCTG	2 cut(s)	2207, 2572
RsaI	GTAC	7 cut(s)	353, 556, 735, 1217, 1729, 1992, 2086
RsaNI	GTAC	7 cut(s)	352, 555, 734, 1216, 1728, 1991, 2085
RseI	CAYNNNNRTG	3 cut(s)	1263, 1512, 1884
SacI	GAGCTC	2 cut(s)	447, 2408
SatI	GCNGC	7 cut(s)	102, 181, 269, 2151, 2205, 2208, 2573
Sau96I	GGNCC	5 cut(s)	145, 146, 1839, 1997, 2187
ScaI	AGTACT	1 cut(s)	556
SchI	GAGTC	5 cut(s)	203, 757, 869, 1202, 1988
ScrFI	CCNGG	6 cut(s)	356, 440, 683, 1002, 1973, 1995
SduI	GDGCHC	3 cut(s)	149, 447, 2408
SfaNI	GCATC	9 cut(s)	363, 766, 794, 959, 1267, 1876, 1924, 2463, 2587
SfcI	CTRYAG	8 cut(s)	178, 1211, 1230, 1560, 2208, 2409, 2418, 2613
SfoI	GGCGCC	2 cut(s)	127, 253
Sfr274I	CTCGAG	2 cut(s)	191, 227
SgrAI	CRCCGGYG	1 cut(s)	1433
SinI	GGWCC	2 cut(s)	1839, 2187
SlaI	CTCGAG	2 cut(s)	191, 227
SmiMI	CAYNNNNRTG	3 cut(s)	1263, 1512, 1884
SmlI	CTYRAG	6 cut(s)	191, 227, 806, 962, 1742, 2522
SmoI	CTYRAG	6 cut(s)	191, 227, 806, 962, 1742, 2522
SnaBI	TACGTA	1 cut(s)	1727
SphI	GCATGC	2 cut(s)	908, 1795
SsiI	CCGC	9 cut(s)	5, 90, 102, 149, 172, 205, 268, 727, 1893
SspDI	GGCGCC	2 cut(s)	125, 251
SspI	AATATT	2 cut(s)	1852, 2633
SspMI	CTAG	2 cut(s)	32, 2699
SstI	GAGCTC	2 cut(s)	447, 2408
StyD4I	CCNGG	6 cut(s)	354, 438, 681, 1000, 1971, 1993
StyI	CCWWGG	2 cut(s)	324, 1920
TaaI	ACNGT	5 cut(s)	1155, 1667, 2089, 2449, 2710
TaiI	ACGT	4 cut(s)	168, 294, 435, 1729
TaqI	TCGA	8 cut(s)	11, 78, 192, 228, 240, 276, 296, 1008
TatI	WGTACW	2 cut(s)	554, 733
TauI	GCSGC	2 cut(s)	104, 271
TfiI	GAWTC	7 cut(s)	8, 422, 929, 1005, 1715, 2077, 2279
TseFI	GTSAC	2 cut(s)	966, 1381
TseI	GCWGC	5 cut(s)	180, 2150, 2204, 2207, 2572
Tsp45I	GTSAC	2 cut(s)	966, 1381
Van91I	CCANNNNNTGG	1 cut(s)	264
Vha464I	CTTAAG	1 cut(s)	806
VpaK11BI	GGWCC	2 cut(s)	1839, 2187
XapI	RAATTY	5 cut(s)	260, 1411, 1954, 2268, 2459
XceI	RCATGY	3 cut(s)	908, 1795, 2668
XhoI	CTCGAG	2 cut(s)	191, 227
XmnI	GAANNNNTTC	1 cut(s)	1686
XspI	CTAG	2 cut(s)	32, 2699
ZraI	GACGTC	1 cut(s)	433
ZrmI	AGTACT	1 cut(s)	556
Zsp2I	ATGCAT	2 cut(s)	781, 787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.