Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Reverse (-)

21818634 .. 21821676

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG137000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATACATTTTGGAGAGAACAACATGCAGAAATGTGAAATCATGCTCAATGATTTGATTGGTTCTAAGAGGACCAACACCAATATTAAAGCAACCATAGCTCAGCCATCTCATACAGTTCATGGTTGCTCCTCTTCATGCAGCAATTATAATGCATTTCAAGATCAGAAAAGCTGGACCTCCAAAGATCTTGCAGCTGCAGTTGGGGTTCCAATAGATACACTTAATCGGAGGATCAATTTTTGGATAAGCAAGGGAATTCTTGCAGAATCACTTGGGGAAGATACTGATGACCATGTGTTTACACTAATGGAAGGGATGATTGGTGTGGAAGACGGCTGGGCAACTAGCTCGACCTCGGAGATTCATGAAGTTGAGCCTGCGATAAACAAATGGGAAGCATCTGGTTCCTCCATTGCATCTCAAGTCTGCAGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

146

Amino Acids

15.94

Weight (kDa)

5.09

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AluBI	AGCT	4 cut(s)	101, 174, 197, 351
AluI	AGCT	4 cut(s)	101, 174, 197, 351
AlwI	GGATC	1 cut(s)	242
ApeKI	GCWGC	3 cut(s)	141, 194, 197
ApoI	RAATTY	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	72, 177
AvaII	GGWCC	2 cut(s)	72, 177
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	3 cut(s)	153, 184, 206
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	333, 367
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	2 cut(s)	198, 430
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	3 cut(s)	142, 195, 198
BlpI	GCTNAGC	1 cut(s)	102
BlsI	GCNGC	3 cut(s)	143, 196, 199
Bme18I	GGWCC	2 cut(s)	72, 177
BmgT120I	GGNCC	2 cut(s)	72, 177
BmiI	GGNNCC	2 cut(s)	210, 409
BmsI	GCATC	2 cut(s)	410, 428
BpiI	GAAGAC	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	3 cut(s)	153, 184, 206
BseYI	CCCAGC	1 cut(s)	339
Bsp143I	GATC	3 cut(s)	163, 187, 234
Bsp1720I	GCTNAGC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	115
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	210, 409
BspMAI	CTGCAG	2 cut(s)	202, 434
BspPI	GGATC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	414
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	3 cut(s)	163, 187, 234
Bst4CI	ACNGT	1 cut(s)	118
Bst6I	CTCTTC	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	66, 102
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	3 cut(s)	166, 190, 237
BstMBI	GATC	3 cut(s)	163, 187, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	28
BstSFI	CTRYAG	2 cut(s)	198, 430
BstV1I	GCAGC	3 cut(s)	153, 184, 206
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	381
CciI	TCATGA	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	72, 177
CviAII	CATG	6 cut(s)	25, 43, 122, 138, 296, 368
CviJI	RGCY	7 cut(s)	101, 106, 174, 197, 339, 351, 379
CviKI_1	RGCY	7 cut(s)	101, 106, 174, 197, 339, 351, 379
DdeI	CTNAG	2 cut(s)	66, 102
DpnI	GATC	3 cut(s)	165, 189, 236
DpnII	GATC	3 cut(s)	163, 187, 234
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	72, 177
EcoRI	GAATTC	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	157
FaeI	CATG	6 cut(s)	28, 46, 125, 141, 299, 371
FaiI	YATR	9 cut(s)	26, 44, 98, 114, 123, 139, 150, 297, 369
FatI	CATG	6 cut(s)	24, 42, 121, 137, 295, 367
Fnu4HI	GCNGC	3 cut(s)	142, 195, 198
FokI	GGATG	1 cut(s)	331
Fsp4HI	GCNGC	3 cut(s)	142, 195, 198
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	3 cut(s)	142, 195, 198
GsaI	CCCAGC	1 cut(s)	343
Hin1II	CATG	6 cut(s)	28, 46, 125, 141, 299, 371
HinfI	GANTC	2 cut(s)	269, 364
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	3 cut(s)	168, 231, 361
Hpy188III	TCNNGA	2 cut(s)	161, 368
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	8 cut(s)	28, 141, 155, 194, 200, 266, 419, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	2 cut(s)	66, 102
Hsp92II	CATG	6 cut(s)	28, 46, 125, 141, 299, 371
Kzo9I	GATC	3 cut(s)	163, 187, 234
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	4 cut(s)	160, 325, 390, 393
Lsp1109I	GCAGC	3 cut(s)	153, 184, 206
LweI	GCATC	2 cut(s)	410, 428
MaeI	CTAG	1 cut(s)	348
MalI	GATC	3 cut(s)	165, 189, 236
MboI	GATC	3 cut(s)	163, 187, 234
MboII	GAAGA	3 cut(s)	126, 293, 344
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	3 cut(s)	145, 238, 258
MnlI	CCTC	6 cut(s)	63, 142, 190, 225, 367, 421
Mph1103I	ATGCAT	1 cut(s)	157
MseI	TTAA	2 cut(s)	87, 225
MspA1I	CMGCKG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	3 cut(s)	163, 187, 234
NlaIII	CATG	6 cut(s)	28, 46, 125, 141, 299, 371
NlaIV	GGNNCC	2 cut(s)	210, 409
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	1 cut(s)	28
PagI	TCATGA	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	269, 364
PkrI	GCNGC	3 cut(s)	143, 196, 199
PsiI	TTATAA	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	210, 409
PspPI	GGNCC	2 cut(s)	72, 177
PstI	CTGCAG	2 cut(s)	202, 434
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	87, 225
SatI	GCNGC	3 cut(s)	142, 195, 198
Sau3AI	GATC	3 cut(s)	163, 187, 234
Sau96I	GGNCC	2 cut(s)	72, 177
SetI	ASST	6 cut(s)	103, 176, 182, 199, 353, 359
SfaNI	GCATC	2 cut(s)	410, 428
SfcI	CTRYAG	2 cut(s)	198, 430
SinI	GGWCC	2 cut(s)	72, 177
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	3 cut(s)	145, 238, 258
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	353
TasI	AATT	3 cut(s)	145, 238, 258
TfiI	GAWTC	2 cut(s)	269, 364
Tru1I	TTAA	2 cut(s)	87, 225
Tru9I	TTAA	2 cut(s)	87, 225
TseI	GCWGC	3 cut(s)	141, 194, 197
TspDTI	ATGAA	4 cut(s)	110, 126, 356, 384
VpaK11BI	GGWCC	2 cut(s)	72, 177
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	1 cut(s)	28
XspI	CTAG	1 cut(s)	348
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.