Rroxscaffold_7G00212760

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000801
Physical Location & Seq
Reverse (-)
63231513 .. 63234559
3047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212760.1

Sequence Viewer

Length: 282 bp
ATGGCCGCCGCTTCATTCCGGACTTGTCCACTTCAGCTCGCTCAATTTCACTCCGAAACCAAAACCCCAATCCCAATTCCCACCAAATTTACCAAACCGATAAGGTTTTCCGGTGGCCGTTATTCCGCATCCGCTACCCGGGCACCCACAAGTGGTGATCATGATATGGCTATTCCATATGTGGGTATTTTTGCTTGGATAGAATCTCTGAACTTGACTATTGATGATGAGGTTTCATGGAAACCTTGGTTCGTCAATGCACAAGTTGCAGAGTTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

93

Amino Acids

10.3

Weight (kDa)

6.71

Isoelectric Point (pI)

23.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AccIII TCCGGA 1 cut(s) 18
AciI CCGC 4 cut(s) 6, 9, 126, 132
AcoI YGGCCR 2 cut(s) 3, 115
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 17
AfiI CCNNNNNNNGG 3 cut(s) 138, 152, 182
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Ama87I CYCGRG 1 cut(s) 138
Aor13HI TCCGGA 1 cut(s) 18
AoxI GGCC 2 cut(s) 3, 115
ApoI RAATTY 1 cut(s) 86
AsuC2I CCSGG 2 cut(s) 139, 140
AsuHPI GGTGA 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 138
BaeGI GKGCMC 1 cut(s) 145
BanI GGYRCC 1 cut(s) 142
BceAI ACGGC 1 cut(s) 102
BclI TGATCA 1 cut(s) 157
BcnI CCSGG 2 cut(s) 139, 140
BisI GCNGC 2 cut(s) 6, 9
BlsI GCNGC 2 cut(s) 7, 10
Bme1390I CCNGG 2 cut(s) 139, 140
BmeT110I CYCGRG 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 139, 140
BmsI GCATC 1 cut(s) 137
BpuMI CCSGG 2 cut(s) 139, 140
BsaJI CCNNGG 2 cut(s) 138, 245
BsaWI WCCGGW 2 cut(s) 18, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 152, 182
BseAI TCCGGA 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 138, 245
BseGI GGATG 1 cut(s) 128
BseLI CCNNNNNNNGG 3 cut(s) 138, 152, 182
BseSI GKGCMC 1 cut(s) 145
BshFI GGCC 2 cut(s) 5, 117
BshNI GGYRCC 1 cut(s) 142
BsiHKCI CYCGRG 1 cut(s) 138
BsiSI CCGG 3 cut(s) 19, 111, 139
BslI CCNNNNNNNGG 3 cut(s) 138, 152, 182
BsnI GGCC 2 cut(s) 5, 117
BsoBI CYCGRG 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 145
Bsp13I TCCGGA 1 cut(s) 18
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 4 cut(s) 6, 9, 126, 132
BspANI GGCC 2 cut(s) 5, 117
BspEI TCCGGA 1 cut(s) 18
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 144
BspT107I GGYRCC 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 138, 245
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 39
BstF5I GGATG 1 cut(s) 128
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 140, 266
BstSCI CCNGG 2 cut(s) 137, 138
BstSLI GKGCMC 1 cut(s) 145
BsuRI GGCC 2 cut(s) 5, 117
BtsCI GGATG 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 39
CciI TCATGA 1 cut(s) 160
Cfr9I CCCGGG 1 cut(s) 138
CviAII CATG 2 cut(s) 161, 237
CviJI RGCY 4 cut(s) 5, 37, 117, 170
CviKI_1 RGCY 4 cut(s) 5, 37, 117, 170
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
EaeI YGGCCR 2 cut(s) 3, 115
Eco130I CCWWGG 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 2 cut(s) 164, 240
FaiI YATR 5 cut(s) 162, 167, 178, 180, 238
FatI CATG 2 cut(s) 160, 236
FauNDI CATATG 1 cut(s) 178
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 6, 9
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 2 cut(s) 6, 9
GluI GCNGC 2 cut(s) 6, 9
HaeIII GGCC 2 cut(s) 5, 117
HapII CCGG 3 cut(s) 19, 111, 139
Hin1II CATG 2 cut(s) 164, 240
HinfI GANTC 1 cut(s) 203
HpaII CCGG 3 cut(s) 19, 111, 139
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 2 cut(s) 55, 210
Hpy188III TCNNGA 2 cut(s) 19, 161
Hpy8I GTNNAC 1 cut(s) 29
HpyCH4V TGCA 2 cut(s) 260, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 266
Hsp92II CATG 2 cut(s) 164, 240
Kpn2I TCCGGA 1 cut(s) 18
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 3 cut(s) 32, 124, 152
LweI GCATC 1 cut(s) 137
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 3 cut(s) 44, 75, 86
MnlI CCTC 1 cut(s) 223
MroI TCCGGA 1 cut(s) 18
MspI CCGG 3 cut(s) 19, 111, 139
MspR9I CCNGG 2 cut(s) 139, 140
MwoI GCNNNNNNNGC 2 cut(s) 140, 266
NciI CCSGG 2 cut(s) 139, 140
NdeI CATATG 1 cut(s) 178
NdeII GATC 1 cut(s) 157
NlaIII CATG 2 cut(s) 164, 240
NlaIV GGNNCC 1 cut(s) 144
PagI TCATGA 1 cut(s) 160
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 2 cut(s) 7, 10
PspN4I GGNNCC 1 cut(s) 144
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 1 cut(s) 157
ScrFI CCNGG 2 cut(s) 139, 140
SduI GDGCHC 1 cut(s) 145
SetI ASST 4 cut(s) 39, 107, 234, 247
SfaNI GCATC 1 cut(s) 137
SmaI CCCGGG 1 cut(s) 140
Sse9I AATT 3 cut(s) 44, 75, 86
SsiI CCGC 4 cut(s) 6, 9, 126, 132
StyD4I CCNGG 2 cut(s) 137, 138
StyI CCWWGG 1 cut(s) 245
TasI AATT 3 cut(s) 44, 75, 86
TauI GCSGC 2 cut(s) 8, 11
TfiI GAWTC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 225
TspMI CCCGGG 1 cut(s) 138
XapI RAATTY 1 cut(s) 86
XmaI CCCGGG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.