Rorug05G0536500

Belongs to the eukaryotic ribosomal protein eS1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
72479507 .. 72483291
3785 bp
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UTR
Exon/CDS
Intron
Rorug05G0536500.1

Sequence Viewer

Length: 495 bp
ATGCTTTTGATTTCGGGTTCTTCACTTTTGATTTCAGCCTTTCAGGTGTTGATTTCGGGTTCTTCACAAAGCACTCTTTTGATTTGGGGTTTTGACGAACTGGAGATTCTGATAAAGCGAGGGATGGTTCTTCTTTTTAAACCCCTCTCAGTTACATCTGATAAAATCAGATATGCTGTTGACATGCCACAGGCAAACAAGGAAGCAGCTGATGAACGTTCTGTTTTCGTTGGCAATATTGAAGAAACAATAATGTATCTGAGGCTAGTTTCAGAAATTGGTTTTGATTCTCTTTATGTGTTTCTTCGTTGCAATGGTGATATTGATTGGAAATTGAAGTTGAAAGTTGATATTGATTGGACACTAACTCTTAAGACGTTGCTGGAAACTCAAAAGTGGGGTAGGAGAGCCAACCATACTTATGGTCAAGCGGAACTTGATGAAGTGCGTAATGAGATTGCAAATTATGTGATGAAGAACCTGCTGAAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

164

Amino Acids

18.75

Weight (kDa)

5.49

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 489
AciI CCGC 1 cut(s) 431
AclI AACGTT 1 cut(s) 217
AflII CTTAAG 1 cut(s) 371
AgsI TTSAA 3 cut(s) 242, 337, 343
AluBI AGCT 2 cut(s) 209, 490
AluI AGCT 2 cut(s) 209, 490
ApeKI GCWGC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 329
BbvI GCAGC 1 cut(s) 218
BccI CCATC 1 cut(s) 118
BfaI CTAG 1 cut(s) 266
BfrI CTTAAG 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 489
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 319
BseGI GGATG 1 cut(s) 129
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 2 cut(s) 162, 251
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 218
BspACI CCGC 1 cut(s) 431
BspCNI CTCAG 2 cut(s) 161, 252
BspMI ACCTGC 1 cut(s) 489
BspTI CTTAAG 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 319
BsrI ACTGG 1 cut(s) 105
BstAFI CTTAAG 1 cut(s) 371
BstDEI CTNAG 2 cut(s) 148, 260
BstF5I GGATG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 218
BstXI CCANNNNNNTGG 1 cut(s) 422
BtsCI GGATG 1 cut(s) 129
BveI ACCTGC 1 cut(s) 489
CviAII CATG 1 cut(s) 184
CviJI RGCY 5 cut(s) 38, 209, 265, 410, 490
CviKI_1 RGCY 5 cut(s) 38, 209, 265, 410, 490
DdeI CTNAG 2 cut(s) 148, 260
DraI TTTAAA 1 cut(s) 139
FaeI CATG 1 cut(s) 187
FaiI YATR 6 cut(s) 174, 185, 297, 417, 423, 468
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FatI CATG 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 266
GluI GCNGC 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 122
Hin1II CATG 1 cut(s) 187
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 2 cut(s) 106, 287
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 5 cut(s) 111, 160, 170, 261, 274
Hpy8I GTNNAC 1 cut(s) 181
HpyCH4IV ACGT 2 cut(s) 217, 377
HpyCH4V TGCA 2 cut(s) 312, 461
HpyF3I CTNAG 2 cut(s) 148, 260
HpySE526I ACGT 2 cut(s) 217, 377
Hsp92II CATG 1 cut(s) 187
LpnPI CCDG 4 cut(s) 29, 86, 176, 368
Lsp1109I GCAGC 1 cut(s) 218
MaeI CTAG 1 cut(s) 266
MaeII ACGT 2 cut(s) 217, 377
MaeIII GTNAC 1 cut(s) 151
MboII GAAGA 6 cut(s) 12, 54, 122, 254, 296, 487
MluCI AATT 3 cut(s) 276, 332, 463
MnlI CCTC 3 cut(s) 113, 155, 255
MseI TTAA 2 cut(s) 138, 372
MslI CAYNNNNRTG 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 209
MspCI CTTAAG 1 cut(s) 371
NlaIII CATG 1 cut(s) 187
NspI RCATGY 1 cut(s) 187
PfeI GAWTC 2 cut(s) 106, 287
PkrI GCNGC 1 cut(s) 208
Psp1406I AACGTT 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 420
SaqAI TTAA 2 cut(s) 138, 372
SatI GCNGC 1 cut(s) 207
SetI ASST 6 cut(s) 48, 211, 220, 380, 483, 492
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 3 cut(s) 276, 332, 463
SsiI CCGC 1 cut(s) 431
SspI AATATT 1 cut(s) 238
SspMI CTAG 1 cut(s) 266
TaiI ACGT 2 cut(s) 220, 380
TasI AATT 3 cut(s) 276, 332, 463
TfiI GAWTC 2 cut(s) 106, 287
Tru1I TTAA 2 cut(s) 138, 372
Tru9I TTAA 2 cut(s) 138, 372
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 228, 456, 488
Vha464I CTTAAG 1 cut(s) 371
XceI RCATGY 1 cut(s) 187
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.