Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Forward (+)

54425527 .. 54426430

Gene Structure 904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034779

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTACTTGGGCCTGTTGATCAACTACTCTGATTGTGCAAAGAGATTTAATGAAATCAAGACCCCTCGTAAGCTATTGTCGAAGAAGAATCTTGGTACTGTCAAGTTGGAATTGCAATTTGAAGATAGAGAAATGCAGTTCATGGTTGCTCCTCTTCATGCAGCAATTATAATGCAATTTCAAAATCAGAAAAGCCGGACGTCCAAAGATCTTGCAGCTGCAGTTGCGGTTCCAATAGATACACTTAATAGGAGGATCAATTTTTGGATAAGCAAGGGAATTCTTGCAGAATCACTTGGGGAAGATACTGATGACCATGTGTTTACACTAATGGAAGGGATGATTGGTTCTTGCCTCTGTTTTCTATTCTGCTTCGTCATTTTTTATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

131

Amino Acids

14.9

Weight (kDa)

7.66

Isoelectric Point (pI)

26.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin_AB	PF26557	16 - 99	2.1e-07	Cullin alpha+beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AatII	GACGTC	1 cut(s)	203
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	279
AcyI	GRCGYC	1 cut(s)	200
AfaI	GTAC	2 cut(s)	5, 97
AgsI	TTSAA	2 cut(s)	122, 182
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AloI	GAACNNNNNNTCC	2 cut(s)	331, 363
AluBI	AGCT	2 cut(s)	73, 218
AluI	AGCT	2 cut(s)	73, 218
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	10
ApeKI	GCWGC	3 cut(s)	161, 215, 218
ApoI	RAATTY	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	173, 205, 227
BclI	TGATCA	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	219
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	3 cut(s)	162, 216, 219
BlsI	GCNGC	3 cut(s)	163, 217, 220
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	200
BseGI	GGATG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	3 cut(s)	173, 205, 227
BshFI	GGCC	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	196
BsnI	GGCC	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	18, 208, 255
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	231
BspMAI	CTGCAG	1 cut(s)	223
BspPI	GGATC	1 cut(s)	263
BssMI	GATC	3 cut(s)	18, 208, 255
BssNI	GRCGYC	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	345
BstKTI	GATC	3 cut(s)	21, 211, 258
BstMBI	GATC	3 cut(s)	18, 208, 255
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	3 cut(s)	173, 205, 227
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	4, 96
CviAII	CATG	3 cut(s)	142, 158, 317
CviJI	RGCY	4 cut(s)	12, 73, 195, 218
CviKI_1	RGCY	4 cut(s)	12, 73, 195, 218
CviQI	GTAC	2 cut(s)	4, 96
DpnI	GATC	3 cut(s)	20, 210, 257
DpnII	GATC	3 cut(s)	18, 208, 255
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	279
FaeI	CATG	3 cut(s)	145, 161, 320
FaiI	YATR	4 cut(s)	143, 159, 170, 318
FatI	CATG	3 cut(s)	141, 157, 316
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	3 cut(s)	162, 216, 219
FokI	GGATG	1 cut(s)	352
Fsp4HI	GCNGC	3 cut(s)	162, 216, 219
GluI	GCNGC	3 cut(s)	162, 216, 219
HaeIII	GGCC	1 cut(s)	12
HapII	CCGG	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	3 cut(s)	145, 161, 320
HinfI	GANTC	2 cut(s)	88, 290
HpaII	CCGG	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	2 cut(s)	31, 189
Hpy188III	TCNNGA	1 cut(s)	58
Hpy8I	GTNNAC	1 cut(s)	324
HpyAV	CCTTC	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	8 cut(s)	38, 115, 136, 161, 175, 215, 221, 287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	200
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	3 cut(s)	145, 161, 320
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	18, 208, 255
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	2 cut(s)	26, 209
Lsp1109I	GCAGC	3 cut(s)	173, 205, 227
MaeII	ACGT	1 cut(s)	200
MalI	GATC	3 cut(s)	20, 210, 257
MboI	GATC	3 cut(s)	18, 208, 255
MboII	GAAGA	5 cut(s)	94, 97, 134, 146, 314
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	6 cut(s)	110, 116, 165, 176, 259, 279
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	4 cut(s)	75, 162, 246, 365
MseI	TTAA	2 cut(s)	48, 246
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	3 cut(s)	18, 208, 255
NlaIII	CATG	3 cut(s)	145, 161, 320
NlaIV	GGNNCC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	88, 290
PkrI	GCNGC	3 cut(s)	163, 217, 220
PsiI	TTATAA	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	2 cut(s)	5, 97
RsaNI	GTAC	2 cut(s)	4, 96
SaqAI	TTAA	2 cut(s)	48, 246
SatI	GCNGC	3 cut(s)	162, 216, 219
Sau3AI	GATC	3 cut(s)	18, 208, 255
Sau96I	GGNCC	1 cut(s)	10
SetI	ASST	3 cut(s)	75, 203, 220
SfcI	CTRYAG	1 cut(s)	219
Sse9I	AATT	6 cut(s)	110, 116, 165, 176, 259, 279
SsiI	CCGC	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	1 cut(s)	80
TasI	AATT	6 cut(s)	110, 116, 165, 176, 259, 279
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	88, 290
Tru1I	TTAA	2 cut(s)	48, 246
Tru9I	TTAA	2 cut(s)	48, 246
TseI	GCWGC	3 cut(s)	161, 215, 218
TspDTI	ATGAA	3 cut(s)	66, 130, 146
XapI	RAATTY	1 cut(s)	279
ZraI	GACGTC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.